Wall clock time and date at job start Tue Mar 31 2020 20:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 117.00123 * 2 1 4 4 O 1.20826 * 119.99791 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00083 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47441 * 180.02562 * 5 3 2 7 7 C 1.33339 * 119.99840 * 279.85474 * 6 5 3 8 8 H 1.07997 * 119.99706 * 315.77621 * 7 6 5 9 9 C 1.46779 * 119.99964 * 135.78216 * 7 6 5 10 10 N 1.29309 * 120.00561 * 340.68700 * 9 7 6 11 11 Si 1.86801 * 119.99591 * 160.68392 * 9 7 6 12 12 H 1.48504 * 109.47145 * 65.00355 * 11 9 7 13 13 H 1.48506 * 109.46977 * 185.00085 * 11 9 7 14 14 H 1.48494 * 109.47431 * 305.00451 * 11 9 7 15 15 C 1.34774 * 120.00351 * 99.84160 * 6 5 3 16 16 O 1.21470 * 120.00387 * 186.64432 * 15 6 5 17 17 C 1.47713 * 119.99831 * 6.65800 * 15 6 5 18 18 C 1.39700 * 120.12153 * 323.90511 * 17 15 6 19 19 C 1.37942 * 119.95266 * 180.25771 * 18 17 15 20 20 C 1.38308 * 120.21741 * 359.49253 * 19 18 17 21 21 N 1.48010 * 119.87203 * 180.23101 * 20 19 18 22 22 O 1.31703 * 120.00217 * 0.02562 * 21 20 19 23 23 O 1.31703 * 119.99778 * 180.02562 * 21 20 19 24 24 C 1.38837 * 120.25245 * 0.25740 * 20 19 18 25 25 O 1.35906 * 119.98027 * 179.97438 * 24 20 19 26 26 C 1.42897 * 117.00208 * 180.02562 * 25 24 20 27 27 C 1.38470 * 120.03973 * 0.02562 * 24 20 19 28 28 H 1.08997 * 109.47202 * 299.99876 * 1 2 3 29 29 H 1.09004 * 109.47055 * 60.00349 * 1 2 3 30 30 H 1.09006 * 109.47394 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46999 * 60.00050 * 5 3 2 32 32 H 1.09001 * 109.47024 * 300.00597 * 5 3 2 33 33 H 0.97000 * 120.00463 * 185.04505 * 10 9 7 34 34 H 1.07997 * 120.02073 * 0.03463 * 18 17 15 35 35 H 1.08002 * 119.88618 * 179.77334 * 19 18 17 36 36 H 1.08996 * 109.47338 * 60.00451 * 26 25 24 37 37 H 1.08998 * 109.47385 * 180.02562 * 26 25 24 38 38 H 1.09006 * 109.46747 * 300.00004 * 26 25 24 39 39 H 1.07993 * 120.10499 * 179.97438 * 27 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6796 0.0011 7 6 3.9818 3.3752 -1.1365 8 1 4.3786 2.9344 -2.0390 9 6 3.4425 4.7401 -1.1621 10 7 2.6454 5.1382 -0.2249 11 14 3.9077 5.9023 -2.5486 12 1 3.3717 5.3816 -3.8318 13 1 3.3345 7.2460 -2.2815 14 1 5.3867 6.0032 -2.6346 15 6 4.3638 3.2690 1.1513 16 8 4.5921 4.4618 1.1760 17 6 4.5051 2.4645 2.3820 18 6 3.6249 1.4095 2.6348 19 6 3.7568 0.6638 3.7878 20 6 4.7647 0.9501 4.6905 21 7 4.9023 0.1418 5.9227 22 8 4.0662 -0.8483 6.1576 23 8 5.8609 0.4127 6.7843 24 6 5.6476 1.9933 4.4456 25 8 6.6356 2.2702 5.3367 26 6 7.5076 3.3575 5.0214 27 6 5.5213 2.7524 3.2944 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.9564 0.7805 -0.8891 32 1 3.9557 0.7808 0.8908 33 1 2.2313 6.0136 -0.2796 34 1 2.8396 1.1802 1.9298 35 1 3.0735 -0.1493 3.9839 36 1 6.9267 4.2756 4.9338 37 1 8.2486 3.4703 5.8128 38 1 8.0131 3.1557 4.0769 39 1 6.2071 3.5643 3.1030 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348795135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:40 Heat of formation + Delta-G solvation = -70.322113 kcal Electronic energy + Delta-G solvation = -30212.283875 eV Core-core repulsion = 25706.084416 eV Total energy + Delta-G solvation = -4506.199459 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.33201 -41.44916 -40.29608 -39.73049 -38.40244 -37.40979 -36.23596 -35.42708 -34.43951 -33.01151 -31.90696 -30.15941 -28.65071 -28.45422 -27.69468 -26.13211 -23.90119 -23.77904 -22.50014 -21.58876 -20.11332 -19.59050 -19.18326 -18.67603 -18.53034 -17.81726 -17.50097 -17.44786 -17.25833 -16.76412 -16.69071 -16.58418 -16.14523 -15.77653 -15.40129 -15.26394 -14.69477 -14.50616 -14.14986 -13.99485 -13.86319 -13.50044 -13.25014 -12.88854 -12.83692 -12.77634 -12.74203 -12.63015 -12.43519 -12.23076 -12.17478 -12.08307 -11.79532 -11.66281 -11.44205 -10.96478 -10.79312 -10.37556 -9.84921 -9.51567 -8.35115 -5.92533 -1.85981 -0.25274 -0.20090 0.05170 1.30192 1.38647 1.45398 1.48455 1.53867 1.75577 1.93940 2.25930 2.53634 2.70802 3.07926 3.11328 3.46376 3.51555 3.59344 3.70208 4.02894 4.07879 4.18696 4.26765 4.27591 4.38198 4.40644 4.42673 4.45147 4.48770 4.66027 4.67117 4.76003 4.89920 5.03581 5.27937 5.46366 5.66552 5.79892 5.95215 6.64708 6.90991 7.05423 7.35484 8.10799 8.64675 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.004544 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.557977 B = 6161.086730 C = 8180.876849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.428 3.572 4 O -0.499 6.499 5 C 0.076 3.924 6 N -0.396 5.396 7 C -0.404 4.404 8 H 0.101 0.899 9 C 0.039 3.961 10 N -0.792 5.792 11 Si 0.975 3.025 12 H -0.258 1.258 13 H -0.287 1.287 14 H -0.266 1.266 15 C 0.463 3.537 16 O -0.563 6.563 17 C -0.002 4.002 18 C -0.157 4.157 19 C 0.003 3.997 20 C -0.059 4.059 21 N 0.002 4.998 22 O -0.207 6.207 23 O -0.189 6.189 24 C 0.211 3.789 25 O -0.291 6.291 26 C 0.006 3.994 27 C -0.178 4.178 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.143 0.857 33 H 0.270 0.730 34 H 0.150 0.850 35 H 0.189 0.811 36 H 0.068 0.932 37 H 0.138 0.862 38 H 0.076 0.924 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 -9.038 2.565 9.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.279 6.279 3 C 0.269 3.731 4 O -0.385 6.385 5 C -0.048 4.048 6 N -0.112 5.112 7 C -0.532 4.532 8 H 0.118 0.882 9 C -0.181 4.181 10 N -0.418 5.418 11 Si 0.798 3.202 12 H -0.183 1.183 13 H -0.213 1.213 14 H -0.191 1.191 15 C 0.255 3.745 16 O -0.445 6.445 17 C -0.007 4.007 18 C -0.176 4.176 19 C -0.015 4.015 20 C -0.149 4.149 21 N 0.471 4.529 22 O -0.393 6.393 23 O -0.378 6.378 24 C 0.160 3.840 25 O -0.201 6.201 26 C -0.087 4.087 27 C -0.198 4.198 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.156 0.844 31 H 0.151 0.849 32 H 0.161 0.839 33 H 0.081 0.919 34 H 0.167 0.833 35 H 0.206 0.794 36 H 0.086 0.914 37 H 0.155 0.845 38 H 0.095 0.905 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.657 -7.733 2.393 8.520 hybrid contribution -0.439 0.980 -0.402 1.147 sum 2.218 -6.753 1.991 7.381 Atomic orbital electron populations 1.23465 0.75626 1.05484 1.01824 1.86514 1.24331 1.32601 1.84455 1.24862 0.93368 0.81680 0.73189 1.90831 1.67012 1.37257 1.43364 1.22273 0.86689 0.87429 1.08401 1.41949 1.52643 1.09114 1.07501 1.20173 1.45490 0.97783 0.89752 0.88154 1.27763 0.92351 1.00076 0.97929 1.69012 1.20742 1.19129 1.32964 0.85328 0.79245 0.76936 0.78654 1.18267 1.21311 1.19113 1.18268 0.84288 0.87841 0.84083 1.90593 1.54224 1.15592 1.84125 1.20681 0.93064 0.92985 0.93926 1.21564 1.01390 0.96335 0.98323 1.21024 0.93113 0.98384 0.89028 1.19942 1.05893 0.99580 0.89480 1.50295 0.99947 1.00270 1.02425 1.96225 1.38198 1.20691 1.84144 1.96284 1.24067 1.75620 1.41878 1.18549 0.87003 0.89988 0.88466 1.86414 1.39115 1.51748 1.42793 1.23697 0.93013 0.86936 1.05090 1.21249 1.02517 1.03011 0.93056 0.92670 0.93098 0.84371 0.84886 0.83949 0.91861 0.83275 0.79421 0.91358 0.84450 0.90493 0.81723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.56 113.37 1.20 1.86 16 2 O -0.36 -10.07 10.57 -51.36 -0.54 -10.61 16 3 C 0.43 15.31 5.93 71.23 0.42 15.74 16 4 O -0.50 -23.02 15.89 21.96 0.35 -22.67 16 5 C 0.08 2.53 5.45 85.63 0.47 3.00 16 6 N -0.40 -17.67 2.07 -638.17 -1.32 -19.00 16 7 C -0.40 -20.03 8.99 86.70 0.78 -19.25 16 8 H 0.10 4.63 8.00 -2.91 -0.02 4.60 16 9 C 0.04 2.01 4.49 87.30 0.39 2.41 16 10 N -0.79 -44.70 11.67 23.25 0.27 -44.43 16 11 Si 0.98 41.19 29.68 68.60 2.04 43.23 16 12 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 13 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 14 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 15 C 0.46 21.51 6.84 86.75 0.59 22.10 16 16 O -0.56 -30.96 14.24 -3.62 -0.05 -31.01 16 17 C 0.00 -0.06 5.43 -20.10 -0.11 -0.16 16 18 C -0.16 -4.73 7.38 22.55 0.17 -4.56 16 19 C 0.00 0.09 9.56 22.22 0.21 0.30 16 20 C -0.06 -1.78 6.90 36.54 0.25 -1.52 16 21 N 0.00 0.06 4.98 -46.09 -0.23 -0.17 16 22 O -0.21 -6.90 19.14 3.51 0.07 -6.84 16 23 O -0.19 -6.73 17.86 10.86 0.19 -6.53 16 24 C 0.21 6.23 6.67 22.47 0.15 6.38 16 25 O -0.29 -7.92 8.39 -71.24 -0.60 -8.52 16 26 C 0.01 0.11 9.81 113.37 1.11 1.22 16 27 C -0.18 -5.58 8.60 22.65 0.19 -5.39 16 28 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 29 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 30 H 0.14 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.13 3.69 8.11 -2.39 -0.02 3.67 16 32 H 0.14 3.89 4.29 -2.39 -0.01 3.88 16 33 H 0.27 14.66 8.27 -92.71 -0.77 13.89 16 34 H 0.15 4.55 3.79 -2.91 -0.01 4.54 16 35 H 0.19 3.91 7.56 -2.91 -0.02 3.89 16 36 H 0.07 1.25 7.66 -2.39 -0.02 1.23 16 37 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.25 7.66 -2.38 -0.02 1.23 16 39 H 0.17 4.91 6.25 -2.91 -0.02 4.90 16 Total: -1.00 -74.97 346.55 7.14 -67.83 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 1.14 Total: 16.60 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 5.83 Total: 22.12 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -1.28 Total: -63.60 kcal Atomic # 8 Polarization: -85.60 SS G_CDS: -0.58 Total: -86.18 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.04 Total: 43.23 kcal Total: -74.97 7.14 -67.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348795135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.491 kcal (2) G-P(sol) polarization free energy of solvation -74.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds