Wall clock time and date at job start Tue Mar 31 2020 20:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34230 * 117.00254 * 2 1 4 4 O 1.20830 * 119.99950 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00342 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47570 * 179.97438 * 5 3 2 7 7 C 1.37096 * 120.00049 * 270.00407 * 6 5 3 8 8 H 1.08006 * 120.00076 * 143.29502 * 7 6 5 9 9 C 1.38949 * 120.00083 * 323.29612 * 7 6 5 10 10 N 1.31413 * 120.00041 * 159.85182 * 9 7 6 11 11 Si 1.86801 * 119.99782 * 339.85424 * 9 7 6 12 12 H 1.48498 * 109.47024 * 95.52368 * 11 9 7 13 13 H 1.48500 * 109.47035 * 215.52002 * 11 9 7 14 14 H 1.48499 * 109.47183 * 335.52486 * 11 9 7 15 15 C 1.34777 * 120.00051 * 89.99772 * 6 5 3 16 16 O 1.21293 * 119.99970 * 354.68494 * 15 6 5 17 17 C 1.50700 * 120.00178 * 174.68861 * 15 6 5 18 18 O 1.42899 * 109.47155 * 185.11921 * 17 15 6 19 19 C 1.35895 * 117.00106 * 184.37933 * 18 17 15 20 20 C 1.38753 * 120.05438 * 353.91414 * 19 18 17 21 21 C 1.38127 * 119.94507 * 179.97438 * 20 19 18 22 22 C 1.38294 * 120.05383 * 0.02562 * 21 20 19 23 23 C 1.38237 * 120.11148 * 359.97438 * 22 21 20 24 24 C 1.38168 * 120.05915 * 0.02562 * 23 22 21 25 25 N 1.48009 * 120.03111 * 180.02562 * 24 23 22 26 26 O 1.21794 * 119.99854 * 359.97438 * 25 24 23 27 27 O 1.21803 * 119.99806 * 179.97438 * 25 24 23 28 28 H 1.09005 * 109.47085 * 299.99837 * 1 2 3 29 29 H 1.09004 * 109.47251 * 59.99645 * 1 2 3 30 30 H 1.08997 * 109.47019 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47091 * 60.00070 * 5 3 2 32 32 H 1.09003 * 109.47661 * 299.99878 * 5 3 2 33 33 H 0.96999 * 119.99718 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.47253 * 65.11521 * 17 15 6 35 35 H 1.08996 * 109.46534 * 305.11015 * 17 15 6 36 36 H 1.07997 * 120.02636 * 359.95418 * 20 19 18 37 37 H 1.07998 * 119.97020 * 179.71868 * 21 20 19 38 38 H 1.07994 * 119.94192 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.97470 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.1756 3.3368 -1.1886 8 1 3.9002 4.3770 -1.2814 9 6 4.7264 2.6645 -2.2728 10 7 4.5578 3.1309 -3.4897 11 14 5.7064 1.0978 -2.0003 12 1 4.8203 -0.0791 -2.1874 13 1 6.8234 1.0365 -2.9769 14 1 6.2544 1.0903 -0.6202 15 6 4.1732 3.3263 1.1659 16 8 3.9094 2.7763 2.2143 17 6 4.7151 4.7325 1.1682 18 8 4.9400 5.1541 2.5149 19 6 5.3441 6.4383 2.7000 20 6 5.6423 7.2375 1.6057 21 6 6.0524 8.5427 1.7965 22 6 6.1664 9.0527 3.0769 23 6 5.8699 8.2585 4.1687 24 6 5.4593 6.9523 3.9833 25 7 5.1414 6.1026 5.1527 26 8 5.2422 6.5546 6.2792 27 8 4.7790 4.9514 4.9885 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.9556 0.7809 -0.8908 32 1 3.9565 0.7806 0.8891 33 1 4.9420 2.6614 -4.2466 34 1 3.9956 5.3999 0.6938 35 1 5.6550 4.7604 0.6170 36 1 5.5542 6.8394 0.6057 37 1 6.2890 9.1637 0.9452 38 1 6.4876 10.0733 3.2240 39 1 5.9600 8.6589 5.1677 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348797660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:34 Heat of formation + Delta-G solvation = -121.505150 kcal Electronic energy + Delta-G solvation = -29521.429477 eV Core-core repulsion = 25013.010554 eV Total energy + Delta-G solvation = -4508.418922 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.18258 -41.88133 -41.39031 -40.36026 -38.72614 -37.61350 -37.44549 -36.82061 -34.11462 -33.13568 -31.84695 -31.10515 -29.22551 -27.81109 -27.41412 -26.74514 -23.88837 -23.39452 -22.59030 -21.20929 -20.56140 -19.64574 -19.56708 -19.06329 -18.82858 -18.56087 -18.31480 -17.55000 -17.39506 -17.19251 -16.99299 -16.82902 -16.15060 -15.82168 -15.61838 -15.42998 -14.84767 -14.65419 -14.50036 -14.33322 -13.87264 -13.71432 -13.55920 -13.21916 -13.02413 -12.93419 -12.66383 -12.60206 -12.45092 -12.30613 -12.17845 -12.02134 -11.94900 -11.85631 -11.75264 -11.23618 -10.72830 -10.66008 -10.06810 -9.70492 -8.60534 -6.29050 -1.15072 0.00147 0.34187 0.48778 1.07311 1.15181 1.23973 1.32810 1.42727 1.48978 1.90616 2.10784 2.32217 2.57015 2.85431 3.31616 3.47879 3.74078 3.79586 3.85082 3.88595 3.98193 4.01466 4.08403 4.10882 4.21520 4.27331 4.27793 4.49088 4.61518 4.75268 4.98650 5.08404 5.14062 5.24384 5.24923 5.41633 5.84142 5.93491 6.04158 6.57243 6.66424 6.77915 7.12256 7.47938 8.52014 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012687 B = 0.003708 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.537540 B = 7548.809343 C = 8851.178173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.451 3.549 4 O -0.523 6.523 5 C 0.101 3.899 6 N -0.450 5.450 7 C -0.355 4.355 8 H 0.091 0.909 9 C 0.038 3.962 10 N -0.880 5.880 11 Si 0.908 3.092 12 H -0.250 1.250 13 H -0.272 1.272 14 H -0.252 1.252 15 C 0.483 3.517 16 O -0.590 6.590 17 C 0.066 3.934 18 O -0.294 6.294 19 C 0.172 3.828 20 C -0.219 4.219 21 C -0.005 4.005 22 C -0.139 4.139 23 C -0.023 4.023 24 C -0.111 4.111 25 N 0.036 4.964 26 O -0.163 6.163 27 O -0.216 6.216 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.142 0.858 31 H 0.113 0.887 32 H 0.128 0.872 33 H 0.285 0.715 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.164 0.836 37 H 0.190 0.810 38 H 0.194 0.806 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.086 8.591 3.856 10.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.293 3.707 4 O -0.411 6.411 5 C -0.023 4.023 6 N -0.173 5.173 7 C -0.482 4.482 8 H 0.109 0.891 9 C -0.169 4.169 10 N -0.515 5.515 11 Si 0.731 3.269 12 H -0.176 1.176 13 H -0.198 1.198 14 H -0.176 1.176 15 C 0.273 3.727 16 O -0.473 6.473 17 C -0.011 4.011 18 O -0.204 6.204 19 C 0.123 3.877 20 C -0.238 4.238 21 C -0.023 4.023 22 C -0.157 4.157 23 C -0.042 4.042 24 C -0.197 4.197 25 N 0.546 4.454 26 O -0.382 6.382 27 O -0.418 6.418 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.160 0.840 31 H 0.130 0.870 32 H 0.145 0.855 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.140 0.860 36 H 0.181 0.819 37 H 0.207 0.793 38 H 0.212 0.788 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.819 8.733 3.712 10.229 hybrid contribution -0.311 -1.167 -0.103 1.212 sum 3.508 7.566 3.608 9.087 Atomic orbital electron populations 1.23570 0.74794 1.05956 1.02205 1.86484 1.25224 1.32315 1.84065 1.24596 0.92871 0.81696 0.71585 1.90598 1.67267 1.37545 1.45658 1.21530 0.87596 0.87247 1.05930 1.43292 1.58892 1.09275 1.05805 1.19010 1.43567 0.98322 0.87294 0.89098 1.25860 0.95943 1.00975 0.94152 1.69793 1.40612 1.42087 0.98970 0.86400 0.80073 0.80298 0.80087 1.17639 1.19788 1.17588 1.20294 0.80596 0.88810 0.83016 1.90655 1.55081 1.69296 1.32261 1.22451 1.03959 0.93902 0.80769 1.86396 1.79751 1.24391 1.29843 1.19243 0.91029 0.84611 0.92852 1.21805 1.07365 0.96742 0.97884 1.22017 0.87775 0.92657 0.99833 1.21677 1.01823 1.02326 0.89920 1.21358 0.91236 0.87553 1.04073 1.20992 1.21818 0.94747 0.82131 1.43865 0.97409 1.01513 1.02597 1.94380 1.56176 1.76991 1.10653 1.94757 1.51345 1.02838 1.92814 0.92450 0.92293 0.84008 0.86972 0.85475 0.90447 0.87734 0.86045 0.81869 0.79321 0.78848 0.80711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.96 16 2 O -0.36 -13.22 10.56 -51.41 -0.54 -13.76 16 3 C 0.45 19.86 8.02 71.23 0.57 20.43 16 4 O -0.52 -26.22 16.18 21.95 0.36 -25.87 16 5 C 0.10 4.40 4.75 85.63 0.41 4.81 16 6 N -0.45 -21.15 1.69 -639.60 -1.08 -22.23 16 7 C -0.36 -17.25 9.02 84.04 0.76 -16.50 16 8 H 0.09 4.60 7.37 -2.91 -0.02 4.58 16 9 C 0.04 1.80 5.35 84.93 0.45 2.26 16 10 N -0.88 -44.52 13.96 21.66 0.30 -44.22 16 11 Si 0.91 36.28 24.84 68.60 1.70 37.98 16 12 H -0.25 -9.35 6.71 99.48 0.67 -8.69 16 13 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 14 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 15 C 0.48 22.95 7.69 87.66 0.67 23.62 16 16 O -0.59 -31.73 16.14 15.92 0.26 -31.47 16 17 C 0.07 2.54 3.94 71.24 0.28 2.82 16 18 O -0.29 -11.89 7.69 -63.36 -0.49 -12.37 16 19 C 0.17 5.39 6.66 22.51 0.15 5.54 16 20 C -0.22 -4.71 9.04 22.37 0.20 -4.51 16 21 C -0.01 -0.06 10.04 22.26 0.22 0.16 16 22 C -0.14 -1.53 10.04 22.28 0.22 -1.31 16 23 C -0.02 -0.44 9.55 22.25 0.21 -0.23 16 24 C -0.11 -3.37 6.87 36.47 0.25 -3.12 16 25 N 0.04 1.39 4.45 -46.24 -0.21 1.19 16 26 O -0.16 -5.75 18.45 18.89 0.35 -5.40 16 27 O -0.22 -10.04 17.24 25.60 0.44 -9.60 16 28 H 0.06 1.61 8.13 -2.38 -0.02 1.59 16 29 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 30 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.11 4.63 2.98 -2.39 -0.01 4.63 16 32 H 0.13 5.15 7.50 -2.39 -0.02 5.14 16 33 H 0.29 13.34 8.31 -92.71 -0.77 12.57 16 34 H 0.10 3.70 7.32 -2.39 -0.02 3.68 16 35 H 0.12 4.05 7.55 -2.39 -0.02 4.04 16 36 H 0.16 3.26 6.33 -2.91 -0.02 3.24 16 37 H 0.19 0.76 8.06 -2.91 -0.02 0.73 16 38 H 0.19 0.38 8.06 -2.91 -0.02 0.36 16 39 H 0.18 2.54 7.61 -2.91 -0.02 2.52 16 Total: -1.00 -78.20 349.16 7.78 -70.43 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 1.08 Total: 19.38 kcal Atomic # 6 Polarization: 30.34 SS G_CDS: 5.60 Total: 35.94 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: -0.99 Total: -65.26 kcal Atomic # 8 Polarization: -98.84 SS G_CDS: 0.37 Total: -98.47 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 1.70 Total: 37.98 kcal Total: -78.20 7.78 -70.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348797660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.080 kcal (2) G-P(sol) polarization free energy of solvation -78.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds