Wall clock time and date at job start Tue Mar 31 2020 20:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99582 * 2 1 4 4 O 1.20826 * 120.00410 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99953 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47251 * 180.02562 * 5 3 2 7 7 C 1.37096 * 119.99649 * 269.99460 * 6 5 3 8 8 H 1.08003 * 119.99804 * 198.17498 * 7 6 5 9 9 C 1.38950 * 120.00190 * 18.18582 * 7 6 5 10 10 N 1.31412 * 119.99909 * 3.55011 * 9 7 6 11 11 Si 1.86794 * 119.99955 * 183.56003 * 9 7 6 12 12 H 1.48498 * 109.47741 * 89.99567 * 11 9 7 13 13 H 1.48506 * 109.47135 * 209.99483 * 11 9 7 14 14 H 1.48495 * 109.47329 * 329.99205 * 11 9 7 15 15 C 1.34777 * 120.00268 * 90.00255 * 6 5 3 16 16 O 1.21293 * 119.99502 * 355.14883 * 15 6 5 17 17 C 1.50697 * 119.99979 * 175.15006 * 15 6 5 18 18 O 1.42900 * 109.46666 * 184.88143 * 17 15 6 19 19 C 1.35907 * 116.99894 * 184.82904 * 18 17 15 20 20 C 1.38731 * 120.05586 * 174.74858 * 19 18 17 21 21 C 1.38143 * 119.94236 * 180.02562 * 20 19 18 22 22 C 1.38270 * 120.05502 * 0.02562 * 21 20 19 23 23 N 1.48002 * 119.94106 * 179.97438 * 22 21 20 24 24 O 1.21797 * 120.00202 * 359.97438 * 23 22 21 25 25 O 1.21802 * 119.99913 * 179.72780 * 23 22 21 26 26 C 1.38262 * 120.11122 * 0.25058 * 22 21 20 27 27 C 1.38148 * 120.05715 * 359.45548 * 26 22 21 28 28 H 1.09007 * 109.46925 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47161 * 299.99514 * 1 2 3 30 30 H 1.08997 * 109.47682 * 59.99736 * 1 2 3 31 31 H 1.09003 * 109.46975 * 59.99681 * 5 3 2 32 32 H 1.09001 * 109.47189 * 300.00028 * 5 3 2 33 33 H 0.96997 * 119.99976 * 185.01349 * 10 9 7 34 34 H 1.08998 * 109.47010 * 64.89008 * 17 15 6 35 35 H 1.08996 * 109.47249 * 304.87837 * 17 15 6 36 36 H 1.07998 * 120.02921 * 359.97438 * 20 19 18 37 37 H 1.08003 * 119.97439 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.97151 * 179.72748 * 26 22 21 39 39 H 1.07994 * 120.02501 * 180.24842 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 7 3.9815 2.6799 0.0002 7 6 4.1755 3.3379 -1.1868 8 1 4.7500 4.2522 -1.2098 9 6 3.6327 2.8288 -2.3602 10 7 2.8756 1.7554 -2.3223 11 14 3.9796 3.6699 -3.9916 12 1 5.2037 3.0880 -4.5984 13 1 2.8285 3.4669 -4.9078 14 1 4.1821 5.1236 -3.7659 15 6 4.1731 3.3254 1.1677 16 8 3.9174 2.7714 2.2159 17 6 4.7050 4.7354 1.1706 18 8 4.9271 5.1578 2.5176 19 6 5.3131 6.4475 2.7041 20 6 5.4406 6.9558 3.9886 21 6 5.8326 8.2672 4.1754 22 6 6.0973 9.0731 3.0835 23 7 6.5166 10.4779 3.2865 24 8 6.6278 10.9233 4.4147 25 8 6.7548 11.1873 2.3255 26 6 5.9654 8.5705 1.8022 27 6 5.5796 7.2580 1.6101 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.9556 0.7810 -0.8908 32 1 3.9564 0.7807 0.8891 33 1 2.5564 1.3576 -3.1474 34 1 3.9807 5.3979 0.6969 35 1 5.6446 4.7704 0.6193 36 1 5.2328 6.3270 4.8417 37 1 5.9317 8.6635 5.1752 38 1 6.1685 9.2033 0.9508 39 1 5.4806 6.8648 0.6092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348800368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:39 Heat of formation + Delta-G solvation = -111.771696 kcal Electronic energy + Delta-G solvation = -28762.249874 eV Core-core repulsion = 24254.253026 eV Total energy + Delta-G solvation = -4507.996848 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -42.18910 -40.53754 -39.57119 -38.56824 -37.45418 -36.58038 -35.56484 -34.76697 -31.88809 -31.75554 -31.29085 -29.53277 -27.75878 -26.36409 -25.88828 -24.77901 -23.32853 -22.24279 -20.53142 -19.62451 -19.41288 -18.71786 -18.42069 -17.64257 -17.54696 -16.76430 -16.29506 -16.12583 -15.90588 -15.52642 -15.30565 -15.05842 -14.54166 -14.48848 -14.03900 -13.89353 -13.70557 -13.28445 -12.96264 -12.75030 -12.50379 -12.37190 -11.72766 -11.62196 -11.51186 -11.43184 -11.32797 -11.22909 -11.18190 -11.13909 -10.97960 -10.81913 -10.61382 -9.92110 -9.77407 -9.67859 -9.19562 -8.94209 -8.84735 -8.26810 -6.70826 -4.35108 -0.16428 0.73794 1.31767 1.39990 2.71734 2.89322 3.01217 3.04576 3.12406 3.26084 3.60731 3.77140 3.90035 4.17883 4.27513 4.44304 4.50515 4.75423 4.76895 5.01795 5.19485 5.37628 5.40606 5.45184 5.56410 5.62687 5.64960 5.71824 5.79785 5.87627 5.97273 6.11173 6.29373 6.35356 6.60872 6.93225 7.06945 7.24399 7.44422 7.62501 7.92438 8.67935 8.95966 9.05647 9.39763 10.31648 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015206 B = 0.002776 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.882411 B =10084.155864 C =11451.764625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.373 6.373 3 C 0.493 3.507 4 O -0.511 6.511 5 C 0.161 3.839 6 N -0.423 5.423 7 C -0.340 4.340 8 H 0.103 0.897 9 C 0.043 3.957 10 N -0.877 5.877 11 Si 0.937 3.063 12 H -0.274 1.274 13 H -0.281 1.281 14 H -0.268 1.268 15 C 0.469 3.531 16 O -0.579 6.579 17 C 0.054 3.946 18 O -0.275 6.275 19 C 0.198 3.802 20 C -0.154 4.154 21 C -0.015 4.015 22 C -0.098 4.098 23 N 0.040 4.960 24 O -0.174 6.174 25 O -0.173 6.173 26 C -0.009 4.009 27 C -0.213 4.213 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.136 0.864 32 H 0.080 0.920 33 H 0.277 0.723 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 3.820 3.535 6.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.291 6.291 3 C 0.335 3.665 4 O -0.397 6.397 5 C 0.036 3.964 6 N -0.143 5.143 7 C -0.466 4.466 8 H 0.121 0.879 9 C -0.161 4.161 10 N -0.516 5.516 11 Si 0.763 3.237 12 H -0.200 1.200 13 H -0.206 1.206 14 H -0.193 1.193 15 C 0.256 3.744 16 O -0.463 6.463 17 C -0.024 4.024 18 O -0.184 6.184 19 C 0.148 3.852 20 C -0.173 4.173 21 C -0.034 4.034 22 C -0.182 4.182 23 N 0.556 4.444 24 O -0.387 6.387 25 O -0.387 6.387 26 C -0.028 4.028 27 C -0.233 4.233 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.154 0.846 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.174 0.826 37 H 0.175 0.825 38 H 0.172 0.828 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.892 2.924 3.934 5.691 hybrid contribution -0.161 0.869 -1.357 1.620 sum 2.732 3.793 2.576 5.337 Atomic orbital electron populations 1.22927 0.78728 1.01833 1.01556 1.86449 1.21609 1.35370 1.85655 1.23741 0.92112 0.80534 0.70119 1.90504 1.66594 1.36468 1.46088 1.20647 0.87509 0.84258 1.04027 1.43239 1.57548 1.08781 1.04752 1.19680 1.32943 1.09933 0.84076 0.87926 1.25269 0.93907 0.96486 1.00445 1.69565 1.31947 1.20976 1.29157 0.85753 0.78135 0.79422 0.80379 1.19954 1.20588 1.19295 1.19382 0.84043 0.86535 0.84437 1.90618 1.56326 1.67884 1.31469 1.22674 1.02375 0.97242 0.80063 1.86231 1.79268 1.22420 1.30518 1.19560 0.87479 0.84087 0.94033 1.20475 1.05973 0.94796 0.96095 1.20784 0.91892 0.91897 0.98834 1.20927 1.17777 0.82762 0.96698 1.43528 0.97546 1.03038 1.00327 1.94513 1.56717 1.77446 1.10040 1.94524 1.53750 1.57078 1.33354 1.20806 0.91437 0.95123 0.95428 1.21443 1.07738 0.93897 1.00206 0.89563 0.93191 0.92715 0.84607 0.90244 0.91134 0.88651 0.89046 0.82587 0.82501 0.82774 0.82614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.56 101.05 1.07 1.80 16 2 O -0.37 -7.73 10.57 -39.26 -0.41 -8.14 16 3 C 0.49 11.64 5.86 36.01 0.21 11.85 16 4 O -0.51 -13.58 15.86 -18.75 -0.30 -13.87 16 5 C 0.16 3.58 5.21 -5.19 -0.03 3.56 16 6 N -0.42 -9.63 2.11 -116.10 -0.25 -9.87 16 7 C -0.34 -7.50 9.26 -14.93 -0.14 -7.64 16 8 H 0.10 2.00 6.42 -52.48 -0.34 1.66 16 9 C 0.04 0.97 5.29 -17.47 -0.09 0.88 16 10 N -0.88 -20.69 8.18 55.50 0.45 -20.23 16 11 Si 0.94 17.57 29.56 -169.99 -5.02 12.55 16 12 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 13 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 14 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 15 C 0.47 10.36 7.69 -10.99 -0.08 10.28 16 16 O -0.58 -14.47 16.14 -14.32 -0.23 -14.70 16 17 C 0.05 0.91 3.70 36.00 0.13 1.05 16 18 O -0.27 -4.53 9.67 -39.31 -0.38 -4.91 16 19 C 0.20 2.58 6.68 -39.22 -0.26 2.32 16 20 C -0.15 -1.72 9.99 -39.43 -0.39 -2.11 16 21 C -0.01 -0.16 9.55 -39.60 -0.38 -0.54 16 22 C -0.10 -1.17 6.85 -79.93 -0.55 -1.72 16 23 N 0.04 0.55 4.45 33.97 0.15 0.70 16 24 O -0.17 -2.46 18.44 -29.46 -0.54 -3.01 16 25 O -0.17 -2.51 18.44 -29.46 -0.54 -3.05 16 26 C -0.01 -0.10 9.55 -39.61 -0.38 -0.47 16 27 C -0.21 -2.43 9.03 -39.43 -0.36 -2.78 16 28 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 29 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.05 0.95 8.13 -51.93 -0.42 0.52 16 31 H 0.14 2.99 6.31 -51.93 -0.33 2.67 16 32 H 0.08 1.67 7.49 -51.93 -0.39 1.28 16 33 H 0.28 6.29 8.32 -40.82 -0.34 5.95 16 34 H 0.10 1.52 7.61 -51.93 -0.40 1.13 16 35 H 0.09 1.31 7.20 -51.93 -0.37 0.93 16 36 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.16 1.34 7.60 -52.48 -0.40 0.94 16 38 H 0.15 1.45 7.61 -52.48 -0.40 1.05 16 39 H 0.16 1.56 6.33 -52.49 -0.33 1.23 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -30.64 351.31 -6.81 -37.45 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -3.78 Total: 5.31 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: -1.25 Total: 16.47 kcal Atomic # 7 Polarization: -29.76 SS G_CDS: 0.36 Total: -29.40 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -2.41 Total: -47.68 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.02 Total: 12.55 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.64 -6.81 -37.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348800368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.322 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds