Wall clock time and date at job start Tue Mar 31 2020 20:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99582 * 2 1 4 4 O 1.20826 * 120.00410 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99953 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47251 * 180.02562 * 5 3 2 7 7 C 1.37096 * 119.99649 * 269.99460 * 6 5 3 8 8 H 1.08003 * 119.99804 * 198.17498 * 7 6 5 9 9 C 1.38950 * 120.00190 * 18.18582 * 7 6 5 10 10 N 1.31412 * 119.99909 * 3.55011 * 9 7 6 11 11 Si 1.86794 * 119.99955 * 183.56003 * 9 7 6 12 12 H 1.48498 * 109.47741 * 89.99567 * 11 9 7 13 13 H 1.48506 * 109.47135 * 209.99483 * 11 9 7 14 14 H 1.48495 * 109.47329 * 329.99205 * 11 9 7 15 15 C 1.34777 * 120.00268 * 90.00255 * 6 5 3 16 16 O 1.21293 * 119.99502 * 355.14883 * 15 6 5 17 17 C 1.50697 * 119.99979 * 175.15006 * 15 6 5 18 18 O 1.42900 * 109.46666 * 184.88143 * 17 15 6 19 19 C 1.35907 * 116.99894 * 184.82904 * 18 17 15 20 20 C 1.38731 * 120.05586 * 174.74858 * 19 18 17 21 21 C 1.38143 * 119.94236 * 180.02562 * 20 19 18 22 22 C 1.38270 * 120.05502 * 0.02562 * 21 20 19 23 23 N 1.48002 * 119.94106 * 179.97438 * 22 21 20 24 24 O 1.21797 * 120.00202 * 359.97438 * 23 22 21 25 25 O 1.21802 * 119.99913 * 179.72780 * 23 22 21 26 26 C 1.38262 * 120.11122 * 0.25058 * 22 21 20 27 27 C 1.38148 * 120.05715 * 359.45548 * 26 22 21 28 28 H 1.09007 * 109.46925 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47161 * 299.99514 * 1 2 3 30 30 H 1.08997 * 109.47682 * 59.99736 * 1 2 3 31 31 H 1.09003 * 109.46975 * 59.99681 * 5 3 2 32 32 H 1.09001 * 109.47189 * 300.00028 * 5 3 2 33 33 H 0.96997 * 119.99976 * 185.01349 * 10 9 7 34 34 H 1.08998 * 109.47010 * 64.89008 * 17 15 6 35 35 H 1.08996 * 109.47249 * 304.87837 * 17 15 6 36 36 H 1.07998 * 120.02921 * 359.97438 * 20 19 18 37 37 H 1.08003 * 119.97439 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.97151 * 179.72748 * 26 22 21 39 39 H 1.07994 * 120.02501 * 180.24842 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 7 3.9815 2.6799 0.0002 7 6 4.1755 3.3379 -1.1868 8 1 4.7500 4.2522 -1.2098 9 6 3.6327 2.8288 -2.3602 10 7 2.8756 1.7554 -2.3223 11 14 3.9796 3.6699 -3.9916 12 1 5.2037 3.0880 -4.5984 13 1 2.8285 3.4669 -4.9078 14 1 4.1821 5.1236 -3.7659 15 6 4.1731 3.3254 1.1677 16 8 3.9174 2.7714 2.2159 17 6 4.7050 4.7354 1.1706 18 8 4.9271 5.1578 2.5176 19 6 5.3131 6.4475 2.7041 20 6 5.4406 6.9558 3.9886 21 6 5.8326 8.2672 4.1754 22 6 6.0973 9.0731 3.0835 23 7 6.5166 10.4779 3.2865 24 8 6.6278 10.9233 4.4147 25 8 6.7548 11.1873 2.3255 26 6 5.9654 8.5705 1.8022 27 6 5.5796 7.2580 1.6101 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.9556 0.7810 -0.8908 32 1 3.9564 0.7807 0.8891 33 1 2.5564 1.3576 -3.1474 34 1 3.9807 5.3979 0.6969 35 1 5.6446 4.7704 0.6193 36 1 5.2328 6.3270 4.8417 37 1 5.9317 8.6635 5.1752 38 1 6.1685 9.2033 0.9508 39 1 5.4806 6.8648 0.6092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348800368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:38 Heat of formation + Delta-G solvation = -127.571726 kcal Electronic energy + Delta-G solvation = -28762.935015 eV Core-core repulsion = 24254.253026 eV Total energy + Delta-G solvation = -4508.681989 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.21609 -41.71021 -41.20619 -40.12616 -38.63182 -37.64097 -37.29331 -36.55138 -33.56558 -32.72345 -32.27200 -31.06741 -29.16079 -27.80610 -27.07358 -26.35059 -24.28056 -23.27373 -22.17804 -21.28203 -20.39839 -19.80905 -19.58234 -19.13962 -18.57862 -18.49640 -17.90184 -17.50547 -17.12445 -17.08370 -16.87402 -16.14510 -16.09514 -15.80423 -15.32171 -14.90322 -14.87367 -14.58386 -14.27298 -14.24076 -13.88947 -13.77391 -13.28027 -13.11559 -12.88796 -12.71153 -12.62076 -12.48066 -12.38519 -12.29863 -12.27360 -12.26126 -12.08610 -11.58742 -11.53671 -10.97605 -10.63717 -10.52393 -10.01695 -9.86822 -8.38587 -6.07708 -1.18138 -0.10970 0.30937 0.41389 1.37259 1.45142 1.54407 1.61211 1.68226 1.82114 2.20165 2.24128 2.32176 2.91450 3.10219 3.32510 3.45672 3.56166 3.82296 3.93055 4.09094 4.17790 4.22443 4.30056 4.34830 4.40083 4.43661 4.52701 4.63709 4.70426 4.70874 4.86274 4.91360 5.06647 5.30609 5.35076 5.55720 5.71418 5.96167 6.23923 6.53584 6.98151 7.21564 7.33293 7.71189 8.64135 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015206 B = 0.002776 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.882411 B =10084.155864 C =11451.764625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.376 6.376 3 C 0.494 3.506 4 O -0.549 6.549 5 C 0.157 3.843 6 N -0.433 5.433 7 C -0.351 4.351 8 H 0.130 0.870 9 C -0.001 4.001 10 N -0.905 5.905 11 Si 1.001 2.999 12 H -0.266 1.266 13 H -0.297 1.297 14 H -0.253 1.253 15 C 0.453 3.547 16 O -0.618 6.618 17 C 0.065 3.935 18 O -0.299 6.299 19 C 0.180 3.820 20 C -0.151 4.151 21 C -0.007 4.007 22 C -0.106 4.106 23 N 0.040 4.960 24 O -0.183 6.183 25 O -0.189 6.189 26 C -0.005 4.005 27 C -0.207 4.207 28 H 0.133 0.867 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.136 0.864 32 H 0.084 0.916 33 H 0.274 0.726 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.169 0.831 37 H 0.177 0.823 38 H 0.171 0.829 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.349 4.760 2.967 7.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.338 3.662 4 O -0.438 6.438 5 C 0.031 3.969 6 N -0.152 5.152 7 C -0.477 4.477 8 H 0.147 0.853 9 C -0.202 4.202 10 N -0.545 5.545 11 Si 0.825 3.175 12 H -0.191 1.191 13 H -0.223 1.223 14 H -0.177 1.177 15 C 0.243 3.757 16 O -0.505 6.505 17 C -0.012 4.012 18 O -0.210 6.210 19 C 0.131 3.869 20 C -0.170 4.170 21 C -0.025 4.025 22 C -0.190 4.190 23 N 0.553 4.447 24 O -0.396 6.396 25 O -0.400 6.400 26 C -0.024 4.024 27 C -0.226 4.226 28 H 0.151 0.849 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.153 0.847 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.139 0.861 36 H 0.186 0.814 37 H 0.195 0.805 38 H 0.189 0.811 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.607 3.881 3.364 6.276 hybrid contribution -0.433 0.515 -1.104 1.293 sum 3.174 4.396 2.260 5.874 Atomic orbital electron populations 1.23268 0.76381 1.04777 1.01055 1.86422 1.23917 1.33899 1.85030 1.23947 0.92569 0.80666 0.69046 1.90466 1.67468 1.37739 1.48083 1.20693 0.87123 0.84986 1.04057 1.43503 1.57318 1.08917 1.05489 1.20261 1.32977 1.10698 0.83772 0.85277 1.26143 0.93675 0.96933 1.03445 1.69665 1.33032 1.22326 1.29461 0.84776 0.77349 0.79248 0.76161 1.19138 1.22331 1.17702 1.20276 0.83455 0.88390 0.83594 1.90576 1.57914 1.69350 1.32669 1.22502 1.03736 0.93908 0.81056 1.86181 1.80386 1.24378 1.30040 1.19805 0.88608 0.83155 0.95303 1.20646 1.05352 0.95022 0.96021 1.20979 0.90759 0.91305 0.99502 1.21147 1.18236 0.81879 0.97708 1.43756 0.97256 1.03614 1.00092 1.94503 1.56989 1.77911 1.10162 1.94517 1.54404 1.57732 1.33368 1.20993 0.90695 0.95101 0.95641 1.21572 1.06931 0.93644 1.00467 0.84899 0.93242 0.93697 0.84692 0.89809 0.91551 0.87581 0.86101 0.81371 0.80521 0.81115 0.81040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.27 10.56 113.37 1.20 2.47 16 2 O -0.38 -15.60 10.57 -51.42 -0.54 -16.15 16 3 C 0.49 23.72 5.86 71.24 0.42 24.14 16 4 O -0.55 -29.74 15.86 21.96 0.35 -29.39 16 5 C 0.16 7.12 5.21 85.63 0.45 7.57 16 6 N -0.43 -19.67 2.11 -639.60 -1.35 -21.02 16 7 C -0.35 -15.08 9.26 84.04 0.78 -14.30 16 8 H 0.13 4.67 6.42 -2.91 -0.02 4.65 16 9 C 0.00 -0.05 5.29 84.93 0.45 0.40 16 10 N -0.90 -42.89 8.18 21.66 0.18 -42.71 16 11 Si 1.00 34.87 29.56 68.60 2.03 36.89 16 12 H -0.27 -8.87 7.11 99.48 0.71 -8.17 16 13 H -0.30 -11.05 7.11 99.48 0.71 -10.35 16 14 H -0.25 -8.14 7.11 99.48 0.71 -7.43 16 15 C 0.45 20.01 7.69 87.66 0.67 20.68 16 16 O -0.62 -31.43 16.14 15.92 0.26 -31.17 16 17 C 0.06 2.10 3.70 71.23 0.26 2.36 16 18 O -0.30 -9.50 9.67 -73.51 -0.71 -10.21 16 19 C 0.18 4.34 6.68 22.51 0.15 4.49 16 20 C -0.15 -3.08 9.99 22.36 0.22 -2.86 16 21 C -0.01 -0.12 9.55 22.25 0.21 0.09 16 22 C -0.11 -2.31 6.85 36.39 0.25 -2.06 16 23 N 0.04 1.04 4.45 -46.44 -0.21 0.83 16 24 O -0.18 -4.93 18.44 18.89 0.35 -4.58 16 25 O -0.19 -5.20 18.44 18.88 0.35 -4.85 16 26 C -0.01 -0.10 9.55 22.25 0.21 0.11 16 27 C -0.21 -4.15 9.03 22.37 0.20 -3.95 16 28 H 0.13 3.04 8.14 -2.38 -0.02 3.03 16 29 H 0.05 1.61 8.13 -2.39 -0.02 1.59 16 30 H 0.04 1.55 8.13 -2.39 -0.02 1.53 16 31 H 0.14 6.09 6.31 -2.39 -0.02 6.07 16 32 H 0.08 3.63 7.49 -2.39 -0.02 3.62 16 33 H 0.27 12.57 8.32 -92.71 -0.77 11.79 16 34 H 0.11 3.17 7.61 -2.39 -0.02 3.15 16 35 H 0.12 3.12 7.20 -2.39 -0.02 3.11 16 36 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 37 H 0.18 2.58 7.60 -2.91 -0.02 2.56 16 38 H 0.17 2.72 7.61 -2.91 -0.02 2.70 16 39 H 0.17 2.85 6.33 -2.91 -0.02 2.83 16 Total: -1.00 -66.89 351.31 7.29 -59.60 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 1.12 Total: 23.61 kcal Atomic # 6 Polarization: 33.67 SS G_CDS: 5.48 Total: 39.14 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -1.38 Total: -62.90 kcal Atomic # 8 Polarization: -96.40 SS G_CDS: 0.05 Total: -96.35 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.89 kcal Total: -66.89 7.29 -59.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348800368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.970 kcal (2) G-P(sol) polarization free energy of solvation -66.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds