Wall clock time and date at job start Tue Mar 31 2020 21:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35988 * 116.99752 * 2 1 4 4 C 1.38539 * 120.08190 * 359.97432 * 3 2 1 5 5 C 1.38245 * 120.01793 * 180.02562 * 4 3 2 6 6 N 1.48022 * 119.91919 * 180.02562 * 5 4 3 7 7 O 1.21803 * 119.99628 * 359.97438 * 6 5 4 8 8 O 1.21797 * 120.00267 * 180.02562 * 6 5 4 9 9 C 1.38277 * 120.17135 * 359.97438 * 5 4 3 10 10 C 1.38204 * 120.16566 * 359.76963 * 9 5 4 11 11 C 1.38712 * 119.98094 * 0.50869 * 10 9 5 12 12 N 1.40170 * 120.08928 * 179.74346 * 11 10 9 13 13 C 1.34779 * 119.99697 * 335.22860 * 12 11 10 14 14 O 1.21592 * 119.99910 * 354.36287 * 13 12 11 15 15 N 1.34776 * 119.99647 * 174.08725 * 13 12 11 16 16 C 1.46499 * 119.99650 * 180.27550 * 15 13 12 17 17 C 1.50703 * 109.46755 * 179.97438 * 16 15 13 18 18 O 1.21292 * 120.00199 * 0.02562 * 17 16 15 19 19 N 1.34785 * 119.99569 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99562 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00122 * 359.97438 * 20 19 17 22 22 C 1.38944 * 119.99639 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00287 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99975 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46859 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47231 * 119.99884 * 24 22 20 27 27 H 1.48500 * 109.47458 * 239.99894 * 24 22 20 28 28 H 1.08995 * 109.47278 * 60.00505 * 1 2 3 29 29 H 1.09010 * 109.46784 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47195 * 300.00098 * 1 2 3 31 31 H 1.08008 * 119.99333 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.91594 * 180.02562 * 9 5 4 33 33 H 1.07997 * 120.01361 * 180.28035 * 10 9 5 34 34 H 0.96996 * 120.00120 * 155.22212 * 12 11 10 35 35 H 0.96999 * 120.00285 * 0.27139 * 15 13 12 36 36 H 1.08994 * 109.47398 * 300.00172 * 16 15 13 37 37 H 1.09007 * 109.46975 * 60.00167 * 16 15 13 38 38 H 0.96999 * 120.00279 * 0.02562 * 19 17 16 39 39 H 0.97000 * 120.00313 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2934 2.3746 -0.0005 5 6 1.9223 3.6057 -0.0011 6 7 1.1157 4.8469 -0.0011 7 8 -0.1006 4.7826 -0.0011 8 8 1.6682 5.9323 -0.0020 9 6 3.3030 3.6807 -0.0005 10 6 4.0613 2.5253 0.0053 11 6 3.4372 1.2866 0.0000 12 7 4.2040 0.1132 0.0006 13 6 5.4618 0.1301 -0.4834 14 8 5.8958 1.1347 -1.0134 15 7 6.2403 -0.9647 -0.3748 16 6 7.6096 -0.9443 -0.8954 17 6 8.2603 -2.2812 -0.6496 18 8 7.6410 -3.1643 -0.0946 19 7 9.5300 -2.4959 -1.0475 20 6 10.1218 -3.7124 -0.8243 21 1 9.5708 -4.4983 -0.3295 22 6 11.4310 -3.9335 -1.2340 23 7 12.1017 -2.9770 -1.8357 24 14 12.2376 -5.5906 -0.9294 25 1 11.2769 -6.4896 -0.2407 26 1 12.6359 -6.1933 -2.2268 27 1 13.4410 -5.4066 -0.0789 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2147 2.3195 -0.0005 32 1 3.7901 4.6447 -0.0005 33 1 5.1395 2.5868 0.0103 34 1 3.8296 -0.7108 0.3493 35 1 5.8941 -1.7660 0.0481 36 1 7.5882 -0.7415 -1.9661 37 1 8.1792 -0.1648 -0.3892 38 1 10.0251 -1.7899 -1.4916 39 1 13.0158 -3.1313 -2.1213 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351144889.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:17 Heat of formation + Delta-G solvation = -67.872754 kcal Electronic energy + Delta-G solvation = -27793.481825 eV Core-core repulsion = 23319.681329 eV Total energy + Delta-G solvation = -4473.800496 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.40778 -41.34973 -40.02633 -38.49592 -37.89827 -36.74164 -35.35378 -34.71332 -33.91946 -31.52981 -31.21084 -30.84052 -28.21028 -27.89864 -26.09455 -24.59978 -23.39861 -22.68309 -21.12173 -20.00212 -19.80416 -19.15539 -18.58536 -18.43286 -17.90996 -17.72655 -17.31948 -16.59666 -16.35223 -15.84613 -15.76562 -15.40450 -14.88143 -14.69735 -14.49961 -14.27787 -14.05556 -13.70284 -13.62334 -13.47400 -12.52066 -12.36297 -12.29150 -12.22565 -11.84612 -11.75769 -11.72127 -11.42204 -11.33778 -11.24020 -11.15774 -10.48634 -10.44020 -10.35289 -9.74706 -9.42171 -9.15595 -8.77191 -8.49809 -8.20679 -6.60984 -4.03447 -0.44304 0.60620 1.07128 1.17758 2.15430 2.52439 2.68471 3.03115 3.12792 3.16774 3.22858 3.61773 3.82225 4.00017 4.05437 4.18025 4.27147 4.53673 4.63692 4.65064 4.71541 4.91554 5.01717 5.07321 5.09982 5.38139 5.39825 5.67055 5.76684 5.79121 5.90332 6.05186 6.16749 6.38176 6.54857 6.61256 7.37293 7.44955 7.70691 7.81506 8.23711 8.33916 8.94680 9.27822 9.74801 10.55640 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026747 B = 0.001904 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.600978 B =14703.366582 C =15649.960315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.308 6.308 3 C 0.093 3.907 4 C -0.126 4.126 5 C -0.040 4.040 6 N 0.035 4.965 7 O -0.172 6.172 8 O -0.161 6.161 9 C -0.056 4.056 10 C -0.104 4.104 11 C 0.215 3.785 12 N -0.673 5.673 13 C 0.704 3.296 14 O -0.574 6.574 15 N -0.710 5.710 16 C 0.125 3.875 17 C 0.425 3.575 18 O -0.598 6.598 19 N -0.546 5.546 20 C -0.306 4.306 21 H 0.107 0.893 22 C 0.026 3.974 23 N -0.892 5.892 24 Si 0.933 3.067 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.061 0.939 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.181 0.819 34 H 0.419 0.581 35 H 0.412 0.588 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.396 0.604 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.777 8.962 3.669 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.044 3.956 4 C -0.147 4.147 5 C -0.125 4.125 6 N 0.553 4.447 7 O -0.385 6.385 8 O -0.377 6.377 9 C -0.076 4.076 10 C -0.126 4.126 11 C 0.115 3.885 12 N -0.319 5.319 13 C 0.405 3.595 14 O -0.451 6.451 15 N -0.366 5.366 16 C -0.003 4.003 17 C 0.211 3.789 18 O -0.485 6.485 19 N -0.180 5.180 20 C -0.436 4.436 21 H 0.124 0.876 22 C -0.177 4.177 23 N -0.532 5.532 24 Si 0.760 3.240 25 H -0.191 1.191 26 H -0.206 1.206 27 H -0.205 1.205 28 H 0.079 0.921 29 H 0.127 0.873 30 H 0.079 0.921 31 H 0.177 0.823 32 H 0.176 0.824 33 H 0.198 0.802 34 H 0.256 0.744 35 H 0.250 0.750 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.230 0.770 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.988 8.352 3.473 21.032 hybrid contribution -0.075 -0.730 0.116 0.743 sum -19.063 7.622 3.589 20.841 Atomic orbital electron populations 1.23215 0.77072 1.04922 1.01910 1.86096 1.22392 1.24636 1.88985 1.18253 0.89930 0.84967 1.02492 1.20686 1.01899 0.89209 1.02892 1.20712 0.91462 0.83851 1.16481 1.43543 1.01264 1.02668 0.97262 1.94516 0.95959 1.94051 1.54003 1.94543 1.74369 1.15324 1.53440 1.20938 0.90039 1.01115 0.95546 1.21467 1.03106 0.88051 0.99956 1.17258 0.86534 0.87386 0.97357 1.42640 1.13557 1.11528 1.64171 1.15791 0.80039 0.84391 0.79306 1.90898 1.73227 1.32133 1.48873 1.44804 1.13925 1.15004 1.62869 1.20920 0.80977 0.98074 1.00280 1.19662 0.83905 0.89012 0.86362 1.90505 1.63798 1.45688 1.48524 1.41792 1.10559 1.14960 1.50698 1.19779 0.96044 0.90921 1.36817 0.87553 1.25347 0.96487 0.99583 0.96269 1.69614 1.11928 1.32929 1.38727 0.85745 0.78999 0.81081 0.78192 1.19108 1.20556 1.20544 0.92056 0.87318 0.92077 0.82279 0.82376 0.80220 0.74380 0.75023 0.89495 0.89443 0.76964 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.41 9.91 -19.70 -0.20 -2.60 16 3 C 0.09 0.84 6.70 -39.08 -0.26 0.57 16 4 C -0.13 -1.11 8.54 -39.47 -0.34 -1.45 16 5 C -0.04 -0.42 6.85 -79.93 -0.55 -0.97 16 6 N 0.04 0.43 4.45 33.97 0.15 0.58 16 7 O -0.17 -2.14 18.44 -29.46 -0.54 -2.68 16 8 O -0.16 -2.07 18.44 -29.46 -0.54 -2.61 16 9 C -0.06 -0.55 9.55 -39.58 -0.38 -0.92 16 10 C -0.10 -1.09 8.72 -39.42 -0.34 -1.44 16 11 C 0.21 2.22 6.45 -83.48 -0.54 1.69 16 12 N -0.67 -7.06 5.30 -14.10 -0.07 -7.13 16 13 C 0.70 9.51 8.37 -86.92 -0.73 8.78 16 14 O -0.57 -9.04 13.51 5.28 0.07 -8.97 16 15 N -0.71 -10.15 5.53 -66.41 -0.37 -10.51 16 16 C 0.13 2.05 6.15 -5.19 -0.03 2.01 16 17 C 0.43 9.02 7.85 -10.98 -0.09 8.93 16 18 O -0.60 -14.32 15.24 5.55 0.08 -14.23 16 19 N -0.55 -12.76 5.29 -10.96 -0.06 -12.82 16 20 C -0.31 -7.97 9.68 -14.93 -0.14 -8.12 16 21 H 0.11 2.90 7.16 -52.49 -0.38 2.52 16 22 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 23 N -0.89 -22.98 13.05 55.50 0.72 -22.25 16 24 Si 0.93 19.83 29.55 -169.99 -5.02 14.80 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 28 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 29 H 0.11 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 31 H 0.16 1.12 5.84 -52.48 -0.31 0.81 16 32 H 0.16 1.31 7.60 -52.48 -0.40 0.92 16 33 H 0.18 2.06 5.79 -52.49 -0.30 1.76 16 34 H 0.42 3.52 8.36 -40.82 -0.34 3.18 16 35 H 0.41 5.73 7.46 -40.82 -0.30 5.42 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.40 8.89 7.90 -40.82 -0.32 8.57 16 39 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 352.38 15.07 5.31 5.31 Total: -1.00 -31.15 352.38 -6.52 -37.66 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -3.55 Total: 14.71 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: -2.50 Total: 10.76 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.38 Total: -52.15 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -1.13 Total: -31.10 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.15 -6.52 -37.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351144889.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.210 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds