Wall clock time and date at job start Tue Mar 31 2020 21:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35988 * 116.99752 * 2 1 4 4 C 1.38539 * 120.08190 * 359.97432 * 3 2 1 5 5 C 1.38245 * 120.01793 * 180.02562 * 4 3 2 6 6 N 1.48022 * 119.91919 * 180.02562 * 5 4 3 7 7 O 1.21803 * 119.99628 * 359.97438 * 6 5 4 8 8 O 1.21797 * 120.00267 * 180.02562 * 6 5 4 9 9 C 1.38277 * 120.17135 * 359.97438 * 5 4 3 10 10 C 1.38204 * 120.16566 * 359.76963 * 9 5 4 11 11 C 1.38712 * 119.98094 * 0.50869 * 10 9 5 12 12 N 1.40170 * 120.08928 * 179.74346 * 11 10 9 13 13 C 1.34779 * 119.99697 * 335.22860 * 12 11 10 14 14 O 1.21592 * 119.99910 * 354.36287 * 13 12 11 15 15 N 1.34776 * 119.99647 * 174.08725 * 13 12 11 16 16 C 1.46499 * 119.99650 * 180.27550 * 15 13 12 17 17 C 1.50703 * 109.46755 * 179.97438 * 16 15 13 18 18 O 1.21292 * 120.00199 * 0.02562 * 17 16 15 19 19 N 1.34785 * 119.99569 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99562 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00122 * 359.97438 * 20 19 17 22 22 C 1.38944 * 119.99639 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00287 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99975 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46859 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47231 * 119.99884 * 24 22 20 27 27 H 1.48500 * 109.47458 * 239.99894 * 24 22 20 28 28 H 1.08995 * 109.47278 * 60.00505 * 1 2 3 29 29 H 1.09010 * 109.46784 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47195 * 300.00098 * 1 2 3 31 31 H 1.08008 * 119.99333 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.91594 * 180.02562 * 9 5 4 33 33 H 1.07997 * 120.01361 * 180.28035 * 10 9 5 34 34 H 0.96996 * 120.00120 * 155.22212 * 12 11 10 35 35 H 0.96999 * 120.00285 * 0.27139 * 15 13 12 36 36 H 1.08994 * 109.47398 * 300.00172 * 16 15 13 37 37 H 1.09007 * 109.46975 * 60.00167 * 16 15 13 38 38 H 0.96999 * 120.00279 * 0.02562 * 19 17 16 39 39 H 0.97000 * 120.00313 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2934 2.3746 -0.0005 5 6 1.9223 3.6057 -0.0011 6 7 1.1157 4.8469 -0.0011 7 8 -0.1006 4.7826 -0.0011 8 8 1.6682 5.9323 -0.0020 9 6 3.3030 3.6807 -0.0005 10 6 4.0613 2.5253 0.0053 11 6 3.4372 1.2866 0.0000 12 7 4.2040 0.1132 0.0006 13 6 5.4618 0.1301 -0.4834 14 8 5.8958 1.1347 -1.0134 15 7 6.2403 -0.9647 -0.3748 16 6 7.6096 -0.9443 -0.8954 17 6 8.2603 -2.2812 -0.6496 18 8 7.6410 -3.1643 -0.0946 19 7 9.5300 -2.4959 -1.0475 20 6 10.1218 -3.7124 -0.8243 21 1 9.5708 -4.4983 -0.3295 22 6 11.4310 -3.9335 -1.2340 23 7 12.1017 -2.9770 -1.8357 24 14 12.2376 -5.5906 -0.9294 25 1 11.2769 -6.4896 -0.2407 26 1 12.6359 -6.1933 -2.2268 27 1 13.4410 -5.4066 -0.0789 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2147 2.3195 -0.0005 32 1 3.7901 4.6447 -0.0005 33 1 5.1395 2.5868 0.0103 34 1 3.8296 -0.7108 0.3493 35 1 5.8941 -1.7660 0.0481 36 1 7.5882 -0.7415 -1.9661 37 1 8.1792 -0.1648 -0.3892 38 1 10.0251 -1.7899 -1.4916 39 1 13.0158 -3.1313 -2.1213 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351144889.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:16 Heat of formation + Delta-G solvation = -90.229125 kcal Electronic energy + Delta-G solvation = -27794.451270 eV Core-core repulsion = 23319.681329 eV Total energy + Delta-G solvation = -4474.769941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.30113 -42.23953 -40.98468 -40.08179 -38.68381 -37.67586 -36.41565 -36.16008 -35.46360 -33.38263 -32.09790 -31.59851 -29.31588 -28.66323 -27.13177 -26.23504 -24.21146 -23.51308 -22.15214 -21.41515 -20.79408 -20.21419 -20.03562 -19.53944 -19.13178 -18.63141 -17.97528 -17.55821 -17.33131 -16.95621 -16.82169 -16.68022 -16.40384 -15.88935 -15.78495 -15.49207 -15.19436 -14.87263 -14.40622 -14.27829 -13.99901 -13.66440 -13.55170 -13.27844 -12.92716 -12.79140 -12.65435 -12.44481 -12.38362 -12.32359 -12.30521 -12.11685 -12.06086 -11.58079 -11.47089 -10.57023 -10.40027 -10.13051 -10.08333 -9.30032 -8.51481 -6.01295 -1.32239 -0.12650 0.18471 0.31655 1.15730 1.34994 1.43972 1.57212 1.70378 1.90990 1.94476 2.25826 2.27351 2.79714 3.14319 3.16222 3.27962 3.47570 3.53102 3.82453 4.03133 4.19006 4.34041 4.35465 4.37545 4.43492 4.44564 4.60999 4.64217 4.76547 4.91726 5.12238 5.18751 5.34453 5.38886 5.62228 5.91883 5.98344 6.47428 6.48942 6.67617 7.03783 7.16264 7.44529 7.94284 8.65364 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026747 B = 0.001904 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.600978 B =14703.366582 C =15649.960315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.315 6.315 3 C 0.104 3.896 4 C -0.119 4.119 5 C -0.047 4.047 6 N 0.036 4.964 7 O -0.173 6.173 8 O -0.185 6.185 9 C -0.054 4.054 10 C -0.108 4.108 11 C 0.201 3.799 12 N -0.660 5.660 13 C 0.709 3.291 14 O -0.596 6.596 15 N -0.711 5.711 16 C 0.140 3.860 17 C 0.432 3.568 18 O -0.625 6.625 19 N -0.559 5.559 20 C -0.335 4.335 21 H 0.087 0.913 22 C -0.011 4.011 23 N -0.915 5.915 24 Si 0.995 3.005 25 H -0.270 1.270 26 H -0.273 1.273 27 H -0.272 1.272 28 H 0.069 0.931 29 H 0.128 0.872 30 H 0.073 0.927 31 H 0.180 0.820 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.430 0.570 35 H 0.414 0.586 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.400 0.600 39 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.941 8.574 3.806 22.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.228 6.228 3 C 0.055 3.945 4 C -0.140 4.140 5 C -0.132 4.132 6 N 0.551 4.449 7 O -0.388 6.388 8 O -0.396 6.396 9 C -0.074 4.074 10 C -0.130 4.130 11 C 0.102 3.898 12 N -0.307 5.307 13 C 0.409 3.591 14 O -0.475 6.475 15 N -0.367 5.367 16 C 0.012 3.988 17 C 0.219 3.781 18 O -0.513 6.513 19 N -0.194 5.194 20 C -0.464 4.464 21 H 0.105 0.895 22 C -0.212 4.212 23 N -0.555 5.555 24 Si 0.819 3.181 25 H -0.194 1.194 26 H -0.198 1.198 27 H -0.198 1.198 28 H 0.087 0.913 29 H 0.146 0.854 30 H 0.092 0.908 31 H 0.197 0.803 32 H 0.185 0.815 33 H 0.188 0.812 34 H 0.269 0.731 35 H 0.253 0.747 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.234 0.766 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.179 8.005 3.619 22.008 hybrid contribution 0.118 -0.624 0.097 0.642 sum -20.061 7.381 3.716 21.696 Atomic orbital electron populations 1.23548 0.75154 1.06608 1.02895 1.86109 1.24329 1.23801 1.88587 1.18159 0.89383 0.85564 1.01421 1.20873 1.02900 0.88391 1.01810 1.20824 0.91548 0.83555 1.17292 1.43749 1.01290 1.03033 0.96870 1.94496 0.96359 1.94162 1.53759 1.94543 1.74373 1.16062 1.54600 1.20999 0.89930 1.01374 0.95104 1.21347 1.02667 0.88457 1.00510 1.17405 0.87234 0.87106 0.98095 1.42415 1.12484 1.12203 1.63596 1.15755 0.80638 0.83598 0.79067 1.90895 1.73950 1.32776 1.49894 1.44682 1.13322 1.15501 1.63208 1.20711 0.81834 0.94984 1.01310 1.20424 0.83065 0.90300 0.84263 1.90485 1.64311 1.47312 1.49170 1.41837 1.11432 1.14501 1.51665 1.19750 0.96829 0.91732 1.38116 0.89538 1.26099 0.96547 1.02768 0.95742 1.69674 1.12321 1.34326 1.39173 0.84835 0.77941 0.77114 0.78249 1.19416 1.19795 1.19760 0.91283 0.85439 0.90836 0.80314 0.81451 0.81237 0.73115 0.74731 0.88307 0.88004 0.76599 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.31 -4.14 9.91 -93.41 -0.93 -5.07 16 3 C 0.10 1.67 6.70 22.59 0.15 1.82 16 4 C -0.12 -1.85 8.54 22.34 0.19 -1.66 16 5 C -0.05 -0.92 6.85 36.39 0.25 -0.67 16 6 N 0.04 0.84 4.45 -46.43 -0.21 0.63 16 7 O -0.17 -4.07 18.44 18.88 0.35 -3.72 16 8 O -0.18 -4.67 18.44 18.89 0.35 -4.33 16 9 C -0.05 -1.00 9.55 22.27 0.21 -0.79 16 10 C -0.11 -2.18 8.72 22.38 0.20 -1.98 16 11 C 0.20 3.88 6.45 38.17 0.25 4.12 16 12 N -0.66 -12.90 5.30 -316.79 -1.68 -14.58 16 13 C 0.71 18.28 8.37 179.05 1.50 19.77 16 14 O -0.60 -18.19 13.51 -4.00 -0.05 -18.25 16 15 N -0.71 -19.51 5.53 -482.29 -2.67 -22.18 16 16 C 0.14 4.41 6.15 85.63 0.53 4.94 16 17 C 0.43 18.30 7.85 87.66 0.69 18.98 16 18 O -0.62 -29.97 15.24 -3.07 -0.05 -30.02 16 19 N -0.56 -26.37 5.29 -306.98 -1.62 -27.99 16 20 C -0.33 -17.67 9.68 84.04 0.81 -16.86 16 21 H 0.09 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 23 N -0.91 -47.01 13.05 21.66 0.28 -46.73 16 24 Si 1.00 40.45 29.55 68.60 2.03 42.48 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 27 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 28 H 0.07 0.34 7.66 -2.39 -0.02 0.32 16 29 H 0.13 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.07 0.29 7.66 -2.39 -0.02 0.27 16 31 H 0.18 2.01 5.84 -2.91 -0.02 1.99 16 32 H 0.17 2.70 7.60 -2.91 -0.02 2.68 16 33 H 0.17 3.83 5.79 -2.91 -0.02 3.81 16 34 H 0.43 6.51 8.36 -92.71 -0.77 5.73 16 35 H 0.41 11.12 7.46 -92.71 -0.69 10.43 16 36 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 37 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 38 H 0.40 18.07 7.90 -92.71 -0.73 17.34 16 39 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 Total: -1.00 -66.10 352.38 1.14 -64.96 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: -1.02 Total: 36.00 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 6.35 Total: 28.79 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -5.89 Total: -110.85 kcal Atomic # 8 Polarization: -61.05 SS G_CDS: -0.33 Total: -61.38 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -66.10 1.14 -64.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351144889.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.265 kcal (2) G-P(sol) polarization free energy of solvation -66.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds