Wall clock time and date at job start Tue Mar 31 2020 21:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99965 * 2 1 4 4 H 1.48503 * 109.47450 * 239.99959 * 3 2 1 5 5 H 1.48500 * 109.47529 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46855 * 120.00436 * 3 2 1 7 7 C 1.37871 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00523 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47138 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.42109 * 110.53807 * 68.37945 * 11 10 9 13 13 O 1.42098 * 110.54422 * 291.62974 * 11 10 9 14 14 N 1.65602 * 104.44973 * 179.97438 * 11 10 9 15 15 C 1.46498 * 119.99612 * 65.28269 * 14 11 10 16 16 C 1.50703 * 109.47212 * 164.72359 * 15 14 11 17 17 C 1.38386 * 119.90484 * 269.72507 * 16 15 14 18 18 C 1.38438 * 120.43631 * 179.78528 * 17 16 15 19 19 C 1.37766 * 119.93620 * 0.49345 * 18 17 16 20 20 C 1.39703 * 119.84064 * 359.74622 * 19 18 17 21 21 C 1.38085 * 119.91150 * 89.99772 * 16 15 14 22 22 C 1.47885 * 118.79127 * 180.02562 * 20 19 18 23 23 O 1.21548 * 120.45363 * 197.66647 * 22 20 19 24 24 N 1.34824 * 119.09603 * 17.64553 * 22 20 19 25 25 C 1.46044 * 121.16739 * 2.78032 * 24 22 20 26 26 C 1.50554 * 120.95097 * 179.69637 * 19 18 17 27 27 H 0.97007 * 119.99442 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46912 * 60.00244 * 9 7 2 29 29 H 1.08993 * 109.47311 * 299.99748 * 9 7 2 30 30 H 1.09009 * 109.46641 * 59.99959 * 10 9 7 31 31 H 1.09001 * 109.47327 * 300.00783 * 10 9 7 32 32 H 0.97001 * 119.99942 * 244.99793 * 14 11 10 33 33 H 1.08996 * 109.46882 * 284.72133 * 15 14 11 34 34 H 1.08999 * 109.47498 * 44.72066 * 15 14 11 35 35 H 1.07994 * 119.77820 * 0.02562 * 17 16 15 36 36 H 1.08005 * 120.03144 * 180.26016 * 18 17 16 37 37 H 1.08001 * 120.21270 * 359.93466 * 21 16 15 38 38 H 0.96995 * 119.41680 * 182.80466 * 24 22 20 39 39 H 1.08999 * 109.15989 * 82.65893 * 25 24 22 40 40 H 1.08995 * 109.16103 * 201.90088 * 25 24 22 41 41 H 1.09000 * 109.39403 * 25.94992 * 26 19 18 42 42 H 1.08999 * 109.32329 * 266.17638 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0011 12 8 0.6629 -5.4194 -1.2375 13 8 0.6654 -5.4199 1.2366 14 7 2.5203 -6.3927 -0.0033 15 6 3.4164 -6.5273 1.1478 16 6 4.1316 -7.8519 1.0756 17 6 3.5775 -8.9688 1.6759 18 6 4.2228 -10.1920 1.6125 19 6 5.4297 -10.2993 0.9569 20 6 5.9956 -9.1736 0.3535 21 6 5.3407 -7.9464 0.4154 22 6 7.2916 -9.3153 -0.3445 23 8 7.9652 -8.3358 -0.5980 24 7 7.7161 -10.5459 -0.6955 25 6 6.8928 -11.7274 -0.4522 26 6 6.1545 -11.6167 0.8799 27 1 -0.4850 0.8402 -0.0004 28 1 0.6240 -2.5566 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8725 -3.6047 0.8878 31 1 2.8712 -3.6040 -0.8922 32 1 2.6168 -6.9855 -0.7650 33 1 4.1472 -5.7187 1.1359 34 1 2.8351 -6.4781 2.0686 35 1 2.6335 -8.8866 2.1940 36 1 3.7824 -11.0604 2.0798 37 1 5.7752 -7.0743 -0.0505 38 1 8.5838 -10.6484 -1.1166 39 1 6.1651 -11.8283 -1.2574 40 1 7.5311 -12.6107 -0.4342 41 1 5.4349 -12.4311 0.9635 42 1 6.8719 -11.6820 1.6979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352048188.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:23 Heat of formation + Delta-G solvation = -97.822921 kcal Electronic energy + Delta-G solvation = -26069.982437 eV Core-core repulsion = 22141.176419 eV Total energy + Delta-G solvation = -3928.806018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05463 -38.81238 -36.88308 -36.56094 -35.47463 -35.11473 -33.87747 -32.28188 -31.45032 -31.14645 -29.71664 -26.13046 -25.58571 -24.42944 -23.41301 -21.90093 -21.64846 -19.67409 -18.93664 -17.76741 -17.66894 -17.27755 -16.46571 -16.43502 -16.10314 -15.66638 -15.42637 -15.06004 -14.92505 -14.59647 -14.52216 -14.20019 -14.02880 -13.66660 -13.44467 -13.22793 -12.94086 -12.61259 -12.46510 -12.30922 -11.75559 -11.72751 -11.70533 -11.59844 -11.50943 -11.25247 -11.04966 -10.95483 -10.43732 -10.36147 -10.30216 -9.80393 -9.62064 -9.51860 -9.32715 -9.08275 -8.98753 -8.48432 -6.10905 -4.16412 0.43946 0.73336 0.98289 2.43491 2.78123 3.13741 3.29136 3.33778 3.35836 3.50291 4.00950 4.07765 4.19528 4.22937 4.38256 4.43839 4.49186 4.63060 4.71562 4.79080 4.93765 5.01291 5.09557 5.21302 5.24256 5.27077 5.31875 5.53152 5.61524 5.64884 5.68041 5.83572 5.93198 5.98168 6.18857 6.35694 6.50121 6.51802 6.73323 7.05575 7.31360 7.37580 7.80493 7.82116 8.19037 8.86840 9.48330 11.00060 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017727 B = 0.002383 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.093362 B =11746.558765 C =12780.791003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.590 4.590 11 S 2.593 3.407 12 O -0.966 6.966 13 O -0.967 6.967 14 N -1.125 6.125 15 C 0.155 3.845 16 C -0.104 4.104 17 C -0.069 4.069 18 C -0.126 4.126 19 C -0.050 4.050 20 C -0.143 4.143 21 C -0.038 4.038 22 C 0.566 3.434 23 O -0.532 6.532 24 N -0.729 5.729 25 C 0.114 3.886 26 C -0.102 4.102 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.413 0.587 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.405 0.595 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.397 -27.706 2.571 30.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.723 4.723 11 S 2.691 3.309 12 O -0.957 6.957 13 O -0.957 6.957 14 N -0.882 5.882 15 C 0.029 3.971 16 C -0.106 4.106 17 C -0.088 4.088 18 C -0.144 4.144 19 C -0.051 4.051 20 C -0.146 4.146 21 C -0.058 4.058 22 C 0.354 3.646 23 O -0.409 6.409 24 N -0.382 5.382 25 C -0.011 4.011 26 C -0.140 4.140 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.246 0.754 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.241 0.759 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.427 -27.136 2.701 29.968 hybrid contribution 1.427 0.806 -0.462 1.703 sum 13.854 -26.330 2.239 29.837 Atomic orbital electron populations 1.69951 1.06106 1.27292 1.49542 1.25067 0.94982 0.99543 0.94909 0.86524 0.79479 0.82502 0.78725 1.20078 1.21099 1.20074 1.20972 0.93053 0.89784 1.52198 0.92065 1.18960 0.92685 0.90547 0.98897 1.30450 1.13730 1.17946 1.10194 1.05566 0.74629 0.76605 0.74135 1.93558 1.71514 1.85325 1.45258 1.93535 1.71438 1.85011 1.45674 1.55891 1.52894 1.52400 1.27005 1.20198 0.92858 0.94238 0.89778 1.19873 0.95233 0.95757 0.99719 1.21416 0.99299 0.91752 0.96290 1.20928 0.94790 0.98168 1.00544 1.19987 0.94628 0.94182 0.96261 1.19651 0.96388 0.94605 1.03966 1.21154 0.93064 0.96730 0.94806 1.18290 0.85670 0.82704 0.77914 1.90841 1.57567 1.37601 1.54854 1.45705 1.22408 1.06439 1.63670 1.21304 0.95014 0.87756 0.96993 1.20853 0.99767 0.95139 0.98212 0.92490 0.94837 0.94795 0.86237 0.85983 0.75357 0.90420 0.88963 0.84750 0.85018 0.84183 0.75886 0.91336 0.89238 0.88388 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.59 -11.09 6.02 37.16 0.22 -10.87 16 11 S 2.59 45.03 5.46 -107.50 -0.59 44.44 16 12 O -0.97 -19.84 18.08 -57.54 -1.04 -20.88 16 13 O -0.97 -19.33 17.49 -57.54 -1.01 -20.33 16 14 N -1.12 -14.13 5.88 -11.66 -0.07 -14.20 16 15 C 0.16 1.68 6.26 -5.19 -0.03 1.65 16 16 C -0.10 -1.03 5.27 -104.62 -0.55 -1.58 16 17 C -0.07 -0.59 9.69 -39.45 -0.38 -0.97 16 18 C -0.13 -0.88 9.73 -39.68 -0.39 -1.27 16 19 C -0.05 -0.37 5.68 -104.32 -0.59 -0.96 16 20 C -0.14 -1.42 5.78 -105.03 -0.61 -2.03 16 21 C -0.04 -0.40 9.29 -39.27 -0.36 -0.77 16 22 C 0.57 6.11 7.79 -12.29 -0.10 6.02 16 23 O -0.53 -7.80 17.46 5.32 0.09 -7.71 16 24 N -0.73 -4.93 5.58 -61.70 -0.34 -5.27 16 25 C 0.11 0.42 7.03 -4.44 -0.03 0.38 16 26 C -0.10 -0.41 6.04 -28.11 -0.17 -0.58 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.12 1.98 8.14 -51.92 -0.42 1.56 16 31 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 32 H 0.41 4.59 8.61 -34.47 -0.30 4.29 16 33 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.09 0.98 7.62 -51.93 -0.40 0.59 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 37 H 0.14 1.52 7.85 -52.49 -0.41 1.11 16 38 H 0.40 2.16 8.92 -40.82 -0.36 1.80 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 41 H 0.10 0.18 8.08 -51.93 -0.42 -0.24 16 42 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -38.41 370.53 -10.85 -49.26 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.65 Total: 2.20 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -3.54 Total: -23.60 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.32 Total: -45.32 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -1.95 Total: -48.92 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 45.03 SS G_CDS: -0.59 Total: 44.44 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.41 -10.85 -49.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352048188.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.567 kcal (2) G-P(sol) polarization free energy of solvation -38.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds