Wall clock time and date at job start Tue Mar 31 2020 21:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99965 * 2 1 4 4 H 1.48503 * 109.47450 * 239.99959 * 3 2 1 5 5 H 1.48500 * 109.47529 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46855 * 120.00436 * 3 2 1 7 7 C 1.37871 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00523 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47138 * 179.97438 * 9 7 2 11 11 S 1.81394 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.42109 * 110.53807 * 68.37945 * 11 10 9 13 13 O 1.42098 * 110.54422 * 291.62974 * 11 10 9 14 14 N 1.65602 * 104.44973 * 179.97438 * 11 10 9 15 15 C 1.46498 * 119.99612 * 65.28269 * 14 11 10 16 16 C 1.50703 * 109.47212 * 164.72359 * 15 14 11 17 17 C 1.38386 * 119.90484 * 269.72507 * 16 15 14 18 18 C 1.38438 * 120.43631 * 179.78528 * 17 16 15 19 19 C 1.37766 * 119.93620 * 0.49345 * 18 17 16 20 20 C 1.39703 * 119.84064 * 359.74622 * 19 18 17 21 21 C 1.38085 * 119.91150 * 89.99772 * 16 15 14 22 22 C 1.47885 * 118.79127 * 180.02562 * 20 19 18 23 23 O 1.21548 * 120.45363 * 197.66647 * 22 20 19 24 24 N 1.34824 * 119.09603 * 17.64553 * 22 20 19 25 25 C 1.46044 * 121.16739 * 2.78032 * 24 22 20 26 26 C 1.50554 * 120.95097 * 179.69637 * 19 18 17 27 27 H 0.97007 * 119.99442 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46912 * 60.00244 * 9 7 2 29 29 H 1.08993 * 109.47311 * 299.99748 * 9 7 2 30 30 H 1.09009 * 109.46641 * 59.99959 * 10 9 7 31 31 H 1.09001 * 109.47327 * 300.00783 * 10 9 7 32 32 H 0.97001 * 119.99942 * 244.99793 * 14 11 10 33 33 H 1.08996 * 109.46882 * 284.72133 * 15 14 11 34 34 H 1.08999 * 109.47498 * 44.72066 * 15 14 11 35 35 H 1.07994 * 119.77820 * 0.02562 * 17 16 15 36 36 H 1.08005 * 120.03144 * 180.26016 * 18 17 16 37 37 H 1.08001 * 120.21270 * 359.93466 * 21 16 15 38 38 H 0.96995 * 119.41680 * 182.80466 * 24 22 20 39 39 H 1.08999 * 109.15989 * 82.65893 * 25 24 22 40 40 H 1.08995 * 109.16103 * 201.90088 * 25 24 22 41 41 H 1.09000 * 109.39403 * 25.94992 * 26 19 18 42 42 H 1.08999 * 109.32329 * 266.17638 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 16 1.3382 -5.2330 -0.0011 12 8 0.6629 -5.4194 -1.2375 13 8 0.6654 -5.4199 1.2366 14 7 2.5203 -6.3927 -0.0033 15 6 3.4164 -6.5273 1.1478 16 6 4.1316 -7.8519 1.0756 17 6 3.5775 -8.9688 1.6759 18 6 4.2228 -10.1920 1.6125 19 6 5.4297 -10.2993 0.9569 20 6 5.9956 -9.1736 0.3535 21 6 5.3407 -7.9464 0.4154 22 6 7.2916 -9.3153 -0.3445 23 8 7.9652 -8.3358 -0.5980 24 7 7.7161 -10.5459 -0.6955 25 6 6.8928 -11.7274 -0.4522 26 6 6.1545 -11.6167 0.8799 27 1 -0.4850 0.8402 -0.0004 28 1 0.6240 -2.5566 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8725 -3.6047 0.8878 31 1 2.8712 -3.6040 -0.8922 32 1 2.6168 -6.9855 -0.7650 33 1 4.1472 -5.7187 1.1359 34 1 2.8351 -6.4781 2.0686 35 1 2.6335 -8.8866 2.1940 36 1 3.7824 -11.0604 2.0798 37 1 5.7752 -7.0743 -0.0505 38 1 8.5838 -10.6484 -1.1166 39 1 6.1651 -11.8283 -1.2574 40 1 7.5311 -12.6107 -0.4342 41 1 5.4349 -12.4311 0.9635 42 1 6.8719 -11.6820 1.6979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352048188.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:22 Heat of formation + Delta-G solvation = -128.361242 kcal Electronic energy + Delta-G solvation = -26071.306678 eV Core-core repulsion = 22141.176419 eV Total energy + Delta-G solvation = -3930.130259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.70027 -39.55729 -38.16086 -37.50727 -37.00720 -36.00470 -35.88579 -33.11623 -32.95989 -32.10245 -30.31241 -27.58272 -26.88115 -25.08637 -23.97249 -23.58478 -22.52443 -20.43958 -20.15880 -19.10669 -18.52902 -18.32398 -17.95190 -17.26369 -17.06350 -16.91211 -16.53232 -16.36604 -16.00773 -15.75929 -15.52403 -15.07197 -14.81794 -14.63074 -14.49169 -14.23518 -14.05921 -13.70941 -13.62288 -13.23295 -13.17631 -13.08414 -12.98748 -12.90493 -12.79620 -12.63559 -12.24401 -12.22183 -12.16224 -11.97660 -11.74090 -11.21170 -11.05637 -10.63652 -10.41078 -10.24427 -9.96234 -9.64930 -8.25883 -6.39564 -0.70438 -0.19663 0.26479 1.40472 1.43730 1.51841 1.67078 1.93485 2.24469 2.37981 2.76763 2.81878 3.07384 3.27030 3.46961 3.54018 3.77040 3.78494 3.99274 4.01948 4.13841 4.22472 4.29396 4.35711 4.41206 4.57885 4.64091 4.75510 4.80132 4.84437 4.92876 4.97881 5.11552 5.23027 5.28831 5.29997 5.39787 5.50498 5.68837 5.79128 5.93394 6.05484 6.07857 6.12634 6.73856 7.12378 7.30358 8.86072 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017727 B = 0.002383 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.093362 B =11746.558765 C =12780.791003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.004 4.004 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.592 4.592 11 S 2.626 3.374 12 O -0.999 6.999 13 O -0.992 6.992 14 N -1.106 6.106 15 C 0.146 3.854 16 C -0.114 4.114 17 C -0.073 4.073 18 C -0.121 4.121 19 C -0.042 4.042 20 C -0.165 4.165 21 C -0.053 4.053 22 C 0.557 3.443 23 O -0.587 6.587 24 N -0.717 5.717 25 C 0.106 3.894 26 C -0.102 4.102 27 H 0.267 0.733 28 H 0.006 0.994 29 H 0.010 0.990 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.423 0.577 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.145 0.855 36 H 0.166 0.834 37 H 0.125 0.875 38 H 0.411 0.589 39 H 0.073 0.927 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.984 -30.345 3.303 34.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.202 4.202 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.579 4.579 8 H 0.092 0.908 9 C -0.019 4.019 10 C -0.724 4.724 11 S 2.722 3.278 12 O -0.989 6.989 13 O -0.982 6.982 14 N -0.867 5.867 15 C 0.021 3.979 16 C -0.115 4.115 17 C -0.092 4.092 18 C -0.138 4.138 19 C -0.043 4.043 20 C -0.168 4.168 21 C -0.073 4.073 22 C 0.346 3.654 23 O -0.469 6.469 24 N -0.369 5.369 25 C -0.017 4.017 26 C -0.139 4.139 27 H 0.076 0.924 28 H 0.024 0.976 29 H 0.028 0.972 30 H 0.162 0.838 31 H 0.158 0.842 32 H 0.259 0.741 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.162 0.838 36 H 0.184 0.816 37 H 0.143 0.857 38 H 0.248 0.752 39 H 0.091 0.909 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.022 -29.826 3.424 33.135 hybrid contribution 0.965 1.436 -0.669 1.855 sum 14.987 -28.390 2.755 32.221 Atomic orbital electron populations 1.70096 1.07977 1.28353 1.50852 1.26099 0.95876 1.03805 0.94433 0.85384 0.78152 0.77448 0.79388 1.18999 1.20876 1.18776 1.21498 0.93946 0.90923 1.51542 0.90777 1.18817 0.93601 0.92965 0.96472 1.30372 1.12887 1.16730 1.12376 1.04317 0.74479 0.76247 0.72730 1.93507 1.72978 1.85767 1.46683 1.93499 1.72576 1.85343 1.46734 1.55401 1.52303 1.50791 1.28158 1.20443 0.92832 0.95756 0.88865 1.19712 0.95158 0.95697 1.00980 1.21669 0.99732 0.91977 0.95833 1.21304 0.94274 0.98581 0.99664 1.20411 0.94607 0.94832 0.94444 1.19774 0.96450 0.95436 1.05164 1.21114 0.93708 0.96883 0.95593 1.18578 0.85766 0.83244 0.77807 1.90800 1.59085 1.39584 1.57387 1.45772 1.22843 1.06206 1.62040 1.21647 0.95519 0.87375 0.97120 1.21014 1.00374 0.94000 0.98475 0.92386 0.97565 0.97184 0.83816 0.84176 0.74130 0.89213 0.88610 0.83762 0.81627 0.85729 0.75201 0.90885 0.85619 0.85139 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 43.95 29.54 68.60 2.03 45.97 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 8 H 0.07 3.85 7.74 -2.91 -0.02 3.82 16 9 C 0.02 1.07 4.98 29.85 0.15 1.22 16 10 C -0.59 -22.31 6.02 71.98 0.43 -21.87 16 11 S 2.63 91.63 5.46 -56.49 -0.31 91.32 16 12 O -1.00 -41.64 18.08 -127.65 -2.31 -43.95 16 13 O -0.99 -39.86 17.49 -127.65 -2.23 -42.10 16 14 N -1.11 -26.99 5.88 -190.79 -1.12 -28.11 16 15 C 0.15 3.04 6.26 85.63 0.54 3.58 16 16 C -0.11 -2.15 5.27 -19.86 -0.10 -2.25 16 17 C -0.07 -1.09 9.69 22.35 0.22 -0.88 16 18 C -0.12 -1.28 9.73 22.21 0.22 -1.06 16 19 C -0.04 -0.50 5.68 -19.67 -0.11 -0.61 16 20 C -0.17 -3.17 5.78 -20.13 -0.12 -3.29 16 21 C -0.05 -1.13 9.29 22.47 0.21 -0.92 16 22 C 0.56 12.01 7.79 86.79 0.68 12.69 16 23 O -0.59 -18.07 17.46 -3.87 -0.07 -18.13 16 24 N -0.72 -8.57 5.58 -467.36 -2.61 -11.18 16 25 C 0.11 0.40 7.03 86.37 0.61 1.01 16 26 C -0.10 -0.39 6.04 29.70 0.18 -0.21 16 27 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 28 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.14 4.65 8.14 -2.39 -0.02 4.63 16 31 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 32 H 0.42 9.05 8.61 -96.74 -0.83 8.22 16 33 H 0.09 1.65 8.08 -2.39 -0.02 1.63 16 34 H 0.10 1.95 7.62 -2.39 -0.02 1.93 16 35 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 36 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 37 H 0.12 2.91 7.85 -2.91 -0.02 2.89 16 38 H 0.41 3.87 8.92 -92.71 -0.83 3.04 16 39 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.13 -0.36 8.14 -2.39 -0.02 -0.38 16 41 H 0.13 -0.26 8.08 -2.39 -0.02 -0.28 16 42 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -86.81 370.53 -3.34 -90.15 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -0.59 Total: 15.37 kcal Atomic # 6 Polarization: -45.99 SS G_CDS: 3.58 Total: -42.40 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -3.45 Total: -96.23 kcal Atomic # 8 Polarization: -99.57 SS G_CDS: -4.61 Total: -104.18 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 91.63 SS G_CDS: -0.31 Total: 91.32 kcal Total: -86.81 -3.34 -90.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352048188.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.211 kcal (2) G-P(sol) polarization free energy of solvation -86.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds