Wall clock time and date at job start Tue Mar 31 2020 21:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86808 * 119.99561 * 2 1 4 4 H 1.48497 * 109.46987 * 269.99970 * 3 2 1 5 5 H 1.48501 * 109.47183 * 30.00079 * 3 2 1 6 6 H 1.48500 * 109.47003 * 149.99649 * 3 2 1 7 7 C 1.38949 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99712 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00027 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99907 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00122 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47353 * 180.02562 * 12 10 9 14 14 S 1.65599 * 120.00164 * 164.99764 * 13 12 10 15 15 O 1.42092 * 106.40333 * 311.45836 * 14 13 12 16 16 O 1.42099 * 106.40026 * 178.54042 * 14 13 12 17 17 C 1.76201 * 107.21741 * 64.99983 * 14 13 12 18 18 C 1.38270 * 120.11101 * 89.99633 * 17 14 13 19 19 C 1.37932 * 119.76902 * 180.14720 * 18 17 14 20 20 C 1.38915 * 120.54681 * 359.97438 * 19 18 17 21 21 C 1.37664 * 119.67937 * 359.74851 * 20 19 18 22 22 C 1.37924 * 120.11636 * 270.02017 * 17 14 13 23 23 C 1.50631 * 122.55884 * 180.73487 * 21 20 19 24 24 C 1.52738 * 110.59230 * 342.00444 * 23 21 20 25 25 C 1.53320 * 108.39867 * 51.12675 * 24 23 21 26 26 C 1.50628 * 117.76255 * 179.42313 * 20 19 18 27 27 H 0.97001 * 120.00057 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00066 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47218 * 59.99748 * 12 10 9 30 30 H 1.09002 * 109.46953 * 299.99734 * 12 10 9 31 31 H 0.97006 * 119.99523 * 345.00082 * 13 12 10 32 32 H 1.07993 * 120.11933 * 0.17772 * 18 17 14 33 33 H 1.07999 * 119.72681 * 180.02562 * 19 18 17 34 34 H 1.08006 * 119.72634 * 0.02562 * 22 17 14 35 35 H 1.09002 * 109.24847 * 102.28612 * 23 21 20 36 36 H 1.08995 * 109.25639 * 221.71277 * 23 21 20 37 37 H 1.08994 * 109.67804 * 170.85385 * 24 23 21 38 38 H 1.09000 * 109.67597 * 291.40010 * 24 23 21 39 39 H 1.08994 * 109.68295 * 49.91353 * 25 24 23 40 40 H 1.09001 * 109.67985 * 170.46152 * 25 24 23 41 41 H 1.09007 * 109.25237 * 282.58928 * 26 20 19 42 42 H 1.08994 * 109.25798 * 42.01865 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6528 0.7001 6 1 3.5456 1.4404 0.7001 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2441 -4.8629 -0.0011 13 7 2.1961 -5.9764 -0.0004 14 16 1.6811 -7.5059 0.3704 15 8 0.9172 -7.3939 1.5633 16 8 2.8168 -8.3516 0.2513 17 6 0.5584 -7.9993 -0.8948 18 6 1.0255 -8.6518 -2.0208 19 6 0.1408 -9.0322 -3.0083 20 6 -1.2166 -8.7656 -2.8811 21 6 -1.6823 -8.1211 -1.7574 22 6 -0.7892 -7.7356 -0.7657 23 6 -3.1416 -7.8143 -1.5450 24 6 -3.9050 -7.8939 -2.8656 25 6 -3.5775 -9.2345 -3.5337 26 6 -2.1245 -9.1969 -4.0030 27 1 -0.4850 0.8401 -0.0004 28 1 0.3536 -2.3907 -0.0005 29 1 0.6177 -4.9204 -0.8913 30 1 0.6171 -4.9208 0.8887 31 1 3.1283 -5.8176 -0.2171 32 1 2.0792 -8.8634 -2.1266 33 1 0.5063 -9.5422 -3.8874 34 1 -1.1531 -7.2251 0.1138 35 1 -3.5618 -8.5346 -0.8430 36 1 -3.2416 -6.8106 -1.1321 37 1 -4.9762 -7.8310 -2.6746 38 1 -3.5989 -7.0749 -3.5164 39 1 -3.7107 -10.0444 -2.8166 40 1 -4.2355 -9.3888 -4.3889 41 1 -2.0321 -8.4935 -4.8307 42 1 -1.8304 -10.1902 -4.3418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352512328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:12 Heat of formation + Delta-G solvation = -105.331994 kcal Electronic energy + Delta-G solvation = -26715.264029 eV Core-core repulsion = 22786.132392 eV Total energy + Delta-G solvation = -3929.131636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.31547 -38.44345 -37.13838 -36.41660 -35.75513 -34.65659 -33.70732 -32.93486 -31.36076 -30.71783 -29.21133 -27.15978 -24.35023 -24.28835 -23.24272 -22.59901 -20.25191 -19.64688 -19.07835 -18.14206 -17.75233 -17.31898 -16.40191 -16.04566 -15.71954 -15.49724 -14.91869 -14.73664 -14.70129 -14.39732 -14.29215 -14.19102 -13.81393 -13.64790 -13.41184 -12.98895 -12.57928 -12.49967 -12.33289 -12.09008 -12.00629 -11.91226 -11.88718 -11.83632 -11.54349 -11.29853 -11.24412 -11.13507 -10.80082 -10.53153 -10.45555 -10.30807 -9.63878 -9.39930 -9.24943 -8.94714 -8.60604 -8.09687 -6.51668 -3.93227 0.40580 0.70702 1.09413 3.00068 3.11853 3.22331 3.27897 3.34132 3.72810 3.85704 4.09677 4.19881 4.28312 4.44856 4.54135 4.61225 4.75621 4.80740 4.89078 4.96792 5.12737 5.15638 5.17839 5.22830 5.37632 5.44506 5.48262 5.49717 5.63368 5.68290 5.70191 5.76958 5.82421 5.85468 5.93520 5.96308 6.03853 6.27213 6.28139 6.66375 7.26116 7.46528 7.93592 8.46200 9.05577 9.39393 9.88149 10.65361 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.003133 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.619611 B = 8933.873281 C =10516.938743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.552 5.552 10 C 0.435 3.565 11 O -0.589 6.589 12 C 0.106 3.894 13 N -1.096 6.096 14 S 2.700 3.300 15 O -0.959 6.959 16 O -0.962 6.962 17 C -0.676 4.676 18 C -0.022 4.022 19 C -0.143 4.143 20 C -0.025 4.025 21 C -0.098 4.098 22 C -0.017 4.017 23 C -0.084 4.084 24 C -0.121 4.121 25 C -0.121 4.121 26 C -0.089 4.089 27 H 0.274 0.726 28 H 0.395 0.605 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.428 0.572 32 H 0.140 0.860 33 H 0.129 0.871 34 H 0.141 0.859 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.522 -18.035 -7.794 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.188 5.188 10 C 0.220 3.780 11 O -0.474 6.474 12 C -0.025 4.025 13 N -0.861 5.861 14 S 2.789 3.211 15 O -0.948 6.948 16 O -0.952 6.952 17 C -0.762 4.762 18 C -0.041 4.041 19 C -0.162 4.162 20 C -0.025 4.025 21 C -0.099 4.099 22 C -0.036 4.036 23 C -0.121 4.121 24 C -0.159 4.159 25 C -0.158 4.158 26 C -0.125 4.125 27 H 0.083 0.917 28 H 0.229 0.771 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.267 0.733 32 H 0.158 0.842 33 H 0.147 0.853 34 H 0.159 0.841 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.791 -18.367 -7.025 21.540 hybrid contribution -0.192 1.024 -0.811 1.320 sum -8.982 -17.344 -7.836 21.045 Atomic orbital electron populations 1.69608 1.05979 1.28454 1.49663 1.25302 0.95665 0.99867 0.96861 0.85822 0.79284 0.80537 0.78451 1.20318 1.20818 1.19310 1.19736 0.93491 0.82011 1.48072 0.87683 1.41807 1.09382 1.04486 1.63120 1.19597 0.88342 0.84660 0.85451 1.90510 1.13662 1.86591 1.56661 1.20946 0.91427 0.87325 1.02753 1.55092 1.20074 1.22543 1.88361 1.01646 0.73317 0.72184 0.73949 1.93578 1.72588 1.86022 1.42656 1.93576 1.49486 1.65083 1.87029 1.30976 1.10828 1.15986 1.18423 1.20818 1.00354 0.92051 0.90885 1.21262 0.92802 1.02362 0.99734 1.19927 0.94172 0.93943 0.94454 1.19728 0.96082 0.99804 0.94308 1.21008 0.91033 0.93942 0.97662 1.20521 0.90407 1.02763 0.98377 1.21566 1.00073 0.97747 0.96505 1.21565 0.95440 0.98095 1.00730 1.20613 0.94071 1.01949 0.95902 0.91654 0.77132 0.90285 0.88713 0.73329 0.84215 0.85259 0.84118 0.90309 0.89997 0.91107 0.91317 0.91504 0.91212 0.89861 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.51 13.05 55.50 0.72 -22.78 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 8 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.55 -13.42 5.29 -10.97 -0.06 -13.48 16 10 C 0.44 9.85 7.85 -10.99 -0.09 9.77 16 11 O -0.59 -15.25 15.30 5.54 0.08 -15.17 16 12 C 0.11 1.79 6.70 -5.19 -0.03 1.75 16 13 N -1.10 -17.51 5.93 -11.66 -0.07 -17.58 16 14 S 2.70 40.01 5.74 -107.50 -0.62 39.39 16 15 O -0.96 -16.24 16.75 -57.18 -0.96 -17.20 16 16 O -0.96 -16.02 17.30 -57.18 -0.99 -17.01 16 17 C -0.68 -8.68 5.94 -39.68 -0.24 -8.92 16 18 C -0.02 -0.26 9.53 -39.68 -0.38 -0.63 16 19 C -0.14 -1.44 9.61 -39.44 -0.38 -1.82 16 20 C -0.02 -0.24 5.74 -104.62 -0.60 -0.84 16 21 C -0.10 -1.04 5.74 -104.62 -0.60 -1.64 16 22 C -0.02 -0.21 9.09 -39.45 -0.36 -0.56 16 23 C -0.08 -0.70 5.67 -28.05 -0.16 -0.85 16 24 C -0.12 -0.84 5.98 -26.70 -0.16 -1.00 16 25 C -0.12 -0.76 5.98 -26.70 -0.16 -0.92 16 26 C -0.09 -0.62 5.67 -28.05 -0.16 -0.78 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.45 16 28 H 0.40 9.03 7.90 -40.82 -0.32 8.71 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.09 1.46 7.75 -51.93 -0.40 1.06 16 31 H 0.43 7.11 7.70 -34.48 -0.27 6.84 16 32 H 0.14 1.47 7.63 -52.49 -0.40 1.07 16 33 H 0.13 0.97 8.05 -52.49 -0.42 0.55 16 34 H 0.14 1.54 7.60 -52.48 -0.40 1.14 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 39 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 42 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -33.76 364.18 -10.49 -44.25 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -5.52 Total: 12.89 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -3.55 Total: -14.23 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.60 Total: -53.84 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -1.86 Total: -49.37 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 40.01 SS G_CDS: -0.62 Total: 39.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.76 -10.49 -44.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352512328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.083 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds