Wall clock time and date at job start Tue Mar 31 2020 21:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86808 * 119.99561 * 2 1 4 4 H 1.48497 * 109.46987 * 269.99970 * 3 2 1 5 5 H 1.48501 * 109.47183 * 30.00079 * 3 2 1 6 6 H 1.48500 * 109.47003 * 149.99649 * 3 2 1 7 7 C 1.38949 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99712 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00027 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99907 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00122 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47353 * 180.02562 * 12 10 9 14 14 S 1.65599 * 120.00164 * 164.99764 * 13 12 10 15 15 O 1.42092 * 106.40333 * 311.45836 * 14 13 12 16 16 O 1.42099 * 106.40026 * 178.54042 * 14 13 12 17 17 C 1.76201 * 107.21741 * 64.99983 * 14 13 12 18 18 C 1.38270 * 120.11101 * 89.99633 * 17 14 13 19 19 C 1.37932 * 119.76902 * 180.14720 * 18 17 14 20 20 C 1.38915 * 120.54681 * 359.97438 * 19 18 17 21 21 C 1.37664 * 119.67937 * 359.74851 * 20 19 18 22 22 C 1.37924 * 120.11636 * 270.02017 * 17 14 13 23 23 C 1.50631 * 122.55884 * 180.73487 * 21 20 19 24 24 C 1.52738 * 110.59230 * 342.00444 * 23 21 20 25 25 C 1.53320 * 108.39867 * 51.12675 * 24 23 21 26 26 C 1.50628 * 117.76255 * 179.42313 * 20 19 18 27 27 H 0.97001 * 120.00057 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00066 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47218 * 59.99748 * 12 10 9 30 30 H 1.09002 * 109.46953 * 299.99734 * 12 10 9 31 31 H 0.97006 * 119.99523 * 345.00082 * 13 12 10 32 32 H 1.07993 * 120.11933 * 0.17772 * 18 17 14 33 33 H 1.07999 * 119.72681 * 180.02562 * 19 18 17 34 34 H 1.08006 * 119.72634 * 0.02562 * 22 17 14 35 35 H 1.09002 * 109.24847 * 102.28612 * 23 21 20 36 36 H 1.08995 * 109.25639 * 221.71277 * 23 21 20 37 37 H 1.08994 * 109.67804 * 170.85385 * 24 23 21 38 38 H 1.09000 * 109.67597 * 291.40010 * 24 23 21 39 39 H 1.08994 * 109.68295 * 49.91353 * 25 24 23 40 40 H 1.09001 * 109.67985 * 170.46152 * 25 24 23 41 41 H 1.09007 * 109.25237 * 282.58928 * 26 20 19 42 42 H 1.08994 * 109.25798 * 42.01865 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6528 0.7001 6 1 3.5456 1.4404 0.7001 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2441 -4.8629 -0.0011 13 7 2.1961 -5.9764 -0.0004 14 16 1.6811 -7.5059 0.3704 15 8 0.9172 -7.3939 1.5633 16 8 2.8168 -8.3516 0.2513 17 6 0.5584 -7.9993 -0.8948 18 6 1.0255 -8.6518 -2.0208 19 6 0.1408 -9.0322 -3.0083 20 6 -1.2166 -8.7656 -2.8811 21 6 -1.6823 -8.1211 -1.7574 22 6 -0.7892 -7.7356 -0.7657 23 6 -3.1416 -7.8143 -1.5450 24 6 -3.9050 -7.8939 -2.8656 25 6 -3.5775 -9.2345 -3.5337 26 6 -2.1245 -9.1969 -4.0030 27 1 -0.4850 0.8401 -0.0004 28 1 0.3536 -2.3907 -0.0005 29 1 0.6177 -4.9204 -0.8913 30 1 0.6171 -4.9208 0.8887 31 1 3.1283 -5.8176 -0.2171 32 1 2.0792 -8.8634 -2.1266 33 1 0.5063 -9.5422 -3.8874 34 1 -1.1531 -7.2251 0.1138 35 1 -3.5618 -8.5346 -0.8430 36 1 -3.2416 -6.8106 -1.1321 37 1 -4.9762 -7.8310 -2.6746 38 1 -3.5989 -7.0749 -3.5164 39 1 -3.7107 -10.0444 -2.8166 40 1 -4.2355 -9.3888 -4.3889 41 1 -2.0321 -8.4935 -4.8307 42 1 -1.8304 -10.1902 -4.3418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352512328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:11 Heat of formation + Delta-G solvation = -129.375086 kcal Electronic energy + Delta-G solvation = -26716.306615 eV Core-core repulsion = 22786.132392 eV Total energy + Delta-G solvation = -3930.174223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.06109 -40.27305 -38.41776 -37.13680 -36.98921 -36.34270 -35.39590 -33.64851 -33.33056 -31.45835 -29.91184 -28.78436 -26.17644 -24.97980 -23.96440 -23.35551 -21.43964 -21.05987 -20.11551 -20.06492 -18.95650 -18.48872 -17.48290 -17.28521 -17.01785 -16.60914 -16.40098 -16.09297 -15.88857 -15.58604 -15.36375 -15.29680 -14.72752 -14.55272 -14.22397 -14.16799 -13.89590 -13.70766 -13.59397 -13.30631 -13.25867 -13.20385 -13.14625 -12.92062 -12.76339 -12.59737 -12.43632 -12.16013 -12.12259 -11.75356 -11.55622 -11.37259 -11.26577 -10.72630 -10.44522 -10.06482 -10.06409 -9.75424 -8.49375 -5.98664 -0.73487 -0.22136 0.26807 1.37232 1.43512 1.55481 1.87066 1.94318 2.29312 2.40944 2.71403 3.05026 3.17702 3.28210 3.63348 3.67078 3.86285 3.97784 4.04678 4.12847 4.17988 4.18490 4.35812 4.41102 4.45492 4.60746 4.63728 4.69754 4.75257 4.86088 4.93876 5.00051 5.05488 5.08258 5.13629 5.27341 5.34397 5.40191 5.46225 5.54408 5.86896 5.88303 5.98986 6.52466 7.07079 7.47404 8.00216 8.67411 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.003133 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.619611 B = 8933.873281 C =10516.938743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.338 4.338 8 H 0.082 0.918 9 N -0.561 5.561 10 C 0.434 3.566 11 O -0.625 6.625 12 C 0.115 3.885 13 N -1.102 6.102 14 S 2.717 3.283 15 O -0.983 6.983 16 O -0.983 6.983 17 C -0.682 4.682 18 C -0.038 4.038 19 C -0.144 4.144 20 C -0.025 4.025 21 C -0.106 4.106 22 C -0.033 4.033 23 C -0.087 4.087 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.089 4.089 27 H 0.280 0.720 28 H 0.401 0.599 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.424 0.576 32 H 0.146 0.854 33 H 0.157 0.843 34 H 0.145 0.855 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.258 -18.678 -9.350 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.208 4.208 3 Si 0.816 3.184 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.467 4.467 8 H 0.100 0.900 9 N -0.197 5.197 10 C 0.220 3.780 11 O -0.513 6.513 12 C -0.015 4.015 13 N -0.864 5.864 14 S 2.810 3.190 15 O -0.973 6.973 16 O -0.974 6.974 17 C -0.772 4.772 18 C -0.057 4.057 19 C -0.162 4.162 20 C -0.025 4.025 21 C -0.107 4.107 22 C -0.052 4.052 23 C -0.124 4.124 24 C -0.158 4.158 25 C -0.157 4.157 26 C -0.126 4.126 27 H 0.089 0.911 28 H 0.235 0.765 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.262 0.738 32 H 0.163 0.837 33 H 0.175 0.825 34 H 0.162 0.838 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.531 -19.007 -8.551 23.352 hybrid contribution 0.294 1.123 -0.384 1.223 sum -10.237 -17.884 -8.935 22.461 Atomic orbital electron populations 1.69659 1.06774 1.29539 1.49415 1.26038 0.96541 1.02378 0.95889 0.84930 0.77892 0.76838 0.78699 1.19511 1.19555 1.19863 1.19699 0.92877 0.83759 1.50387 0.89999 1.41840 1.09601 1.04489 1.63793 1.20511 0.88218 0.85998 0.83277 1.90484 1.15596 1.87507 1.57683 1.20946 0.91128 0.84259 1.05209 1.55114 1.19868 1.22775 1.88676 1.00878 0.72907 0.71357 0.73852 1.93537 1.72893 1.86187 1.44731 1.93538 1.50949 1.65362 1.87510 1.30496 1.10532 1.17838 1.18301 1.21047 1.01195 0.92410 0.91084 1.21615 0.92774 1.01788 1.00036 1.20364 0.94685 0.92653 0.94834 1.20047 0.97025 0.99461 0.94137 1.21197 0.90950 0.94597 0.98486 1.20608 0.89255 1.02995 0.99531 1.21582 1.00605 0.98053 0.95594 1.21582 0.95243 0.97544 1.01312 1.20719 0.93920 1.02970 0.94946 0.91081 0.76466 0.86997 0.86966 0.73790 0.83668 0.82521 0.83763 0.89547 0.89977 0.89836 0.91826 0.91567 0.89511 0.88952 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.48 13.05 21.66 0.28 -47.20 16 2 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 3 Si 0.99 41.68 29.55 68.60 2.03 43.71 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.34 -18.57 9.68 84.04 0.81 -17.76 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.56 -27.64 5.29 -306.99 -1.62 -29.26 16 10 C 0.43 19.90 7.85 87.66 0.69 20.59 16 11 O -0.63 -33.26 15.30 -3.08 -0.05 -33.30 16 12 C 0.11 3.82 6.70 85.63 0.57 4.39 16 13 N -1.10 -35.37 5.93 -190.79 -1.13 -36.50 16 14 S 2.72 80.93 5.74 -56.49 -0.32 80.60 16 15 O -0.98 -33.52 16.75 -128.00 -2.14 -35.67 16 16 O -0.98 -33.21 17.30 -128.00 -2.21 -35.42 16 17 C -0.68 -17.08 5.94 22.20 0.13 -16.95 16 18 C -0.04 -0.85 9.53 22.20 0.21 -0.64 16 19 C -0.14 -2.57 9.61 22.36 0.21 -2.35 16 20 C -0.03 -0.43 5.74 -19.86 -0.11 -0.54 16 21 C -0.11 -2.05 5.74 -19.86 -0.11 -2.17 16 22 C -0.03 -0.76 9.09 22.36 0.20 -0.55 16 23 C -0.09 -1.28 5.67 29.74 0.17 -1.11 16 24 C -0.12 -1.37 5.98 30.61 0.18 -1.18 16 25 C -0.12 -1.13 5.98 30.61 0.18 -0.94 16 26 C -0.09 -0.96 5.67 29.74 0.17 -0.79 16 27 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16 28 H 0.40 18.44 7.90 -92.71 -0.73 17.71 16 29 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 30 H 0.11 3.38 7.75 -2.39 -0.02 3.36 16 31 H 0.42 14.44 7.70 -96.74 -0.75 13.70 16 32 H 0.15 2.96 7.63 -2.91 -0.02 2.94 16 33 H 0.16 1.85 8.05 -2.91 -0.02 1.83 16 34 H 0.14 3.08 7.60 -2.91 -0.02 3.06 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.19 8.12 -2.39 -0.02 1.17 16 37 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 39 H 0.07 0.65 8.10 -2.39 -0.02 0.63 16 40 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.10 0.75 8.12 -2.39 -0.02 0.73 16 Total: -1.00 -72.71 364.18 -1.80 -74.51 By element: Atomic # 1 Polarization: 38.88 SS G_CDS: -0.41 Total: 38.47 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: 3.78 Total: -19.94 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -2.47 Total: -112.96 kcal Atomic # 8 Polarization: -99.99 SS G_CDS: -4.41 Total: -104.40 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: 80.93 SS G_CDS: -0.32 Total: 80.60 kcal Total: -72.71 -1.80 -74.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352512328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.861 kcal (2) G-P(sol) polarization free energy of solvation -72.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds