Wall clock time and date at job start Tue Mar 31 2020 20:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97758 * 124.71469 * 10 9 7 12 12 C 1.35229 * 107.86711 * 179.83522 * 11 10 9 13 13 C 1.40431 * 107.86689 * 0.42326 * 12 11 10 14 14 N 1.40069 * 125.97339 * 179.70003 * 13 12 11 15 15 C 1.34771 * 120.00314 * 0.02562 * 14 13 12 16 16 O 1.21564 * 119.99830 * 359.97438 * 15 14 13 17 17 C 1.47889 * 119.99817 * 179.97438 * 15 14 13 18 18 C 1.39487 * 119.65992 * 179.72974 * 17 15 14 19 19 C 1.38314 * 119.13677 * 179.73051 * 18 17 15 20 20 C 1.39243 * 118.44194 * 0.52504 * 19 18 17 21 21 O 1.35721 * 120.37870 * 179.75534 * 20 19 18 22 22 C 1.42900 * 117.00206 * 179.97438 * 21 20 19 23 23 F 1.39900 * 109.46592 * 300.00084 * 22 21 20 24 24 F 1.39902 * 109.47050 * 59.99310 * 22 21 20 25 25 C 1.39230 * 119.23582 * 359.73531 * 20 19 18 26 26 N 1.31373 * 120.81295 * 359.97438 * 25 20 19 27 27 N 1.31239 * 108.04544 * 359.74026 * 13 12 11 28 28 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 30 30 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 31 31 H 1.08002 * 126.06186 * 359.96239 * 11 10 9 32 32 H 1.07992 * 126.06790 * 180.15633 * 12 11 10 33 33 H 0.97002 * 119.99193 * 180.02562 * 14 13 12 34 34 H 1.08000 * 120.43243 * 359.97438 * 18 17 15 35 35 H 1.07998 * 120.78095 * 180.25848 * 19 18 17 36 36 H 1.08991 * 109.47369 * 179.97438 * 22 21 20 37 37 H 1.08004 * 119.58920 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8836 12 6 3.2624 -5.4441 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9601 -5.4617 -1.3034 15 6 5.5263 -6.6027 -0.8628 16 8 5.0884 -7.1556 0.1273 17 6 6.6802 -7.1819 -1.5840 18 6 7.2644 -8.3600 -1.1185 19 6 8.3395 -8.8953 -1.8045 20 6 8.8056 -8.2262 -2.9333 21 8 9.8612 -8.7139 -3.6331 22 6 10.2790 -7.9700 -4.7795 23 9 9.2240 -7.8932 -5.6952 24 9 10.6513 -6.6796 -4.3878 25 6 8.1759 -7.0515 -3.3359 26 7 7.1528 -6.5725 -2.6652 27 7 3.2287 -3.8132 -0.9445 28 1 -0.4850 -0.8400 0.0004 29 1 0.6281 -2.5591 0.8866 30 1 0.6207 -2.5548 -0.8933 31 1 1.5912 -4.7502 1.7306 32 1 3.5577 -6.3465 1.0448 33 1 5.3097 -5.0203 -2.0932 34 1 6.8796 -8.8499 -0.2363 35 1 8.8093 -9.8084 -1.4701 36 1 11.1294 -8.4676 -5.2454 37 1 8.5329 -6.5278 -4.2103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355519042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:48 Heat of formation + Delta-G solvation = -53.414062 kcal Electronic energy + Delta-G solvation = -27399.599484 eV Core-core repulsion = 22815.338448 eV Total energy + Delta-G solvation = -4584.261036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.00052 -47.98465 -41.34224 -40.63324 -39.44698 -38.27867 -34.95974 -33.71578 -32.94983 -31.57242 -30.62263 -29.39242 -27.21378 -26.31253 -24.94630 -24.05818 -23.01984 -21.83948 -20.60995 -19.84016 -19.75167 -19.05159 -18.56943 -18.00125 -17.17911 -16.96274 -16.52359 -16.13683 -15.76118 -15.37120 -15.21674 -14.98630 -14.64110 -14.44546 -14.30648 -14.09901 -13.94128 -13.78204 -13.66204 -13.59727 -13.29988 -13.12685 -12.52330 -12.43578 -12.23405 -11.84077 -11.15034 -10.80213 -10.50366 -10.40854 -10.38652 -10.15852 -10.07059 -9.72659 -9.28982 -8.98610 -8.56494 -8.20978 -7.53334 -6.56920 -4.30795 0.13187 0.63822 1.76539 2.22175 2.62480 2.79399 2.80465 3.29431 3.38272 3.42779 3.54890 3.58900 3.60755 3.75314 3.87122 3.94895 3.95751 4.29541 4.41481 4.44762 4.67786 4.97406 5.16732 5.18577 5.34538 5.50172 5.68971 5.73018 6.13584 6.16556 6.38652 6.48324 6.57360 6.75708 7.16008 7.31813 7.48044 7.70956 7.83239 8.11665 8.36171 8.54050 8.63206 9.37340 10.80807 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.016206 B = 0.002202 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.339869 B =12714.413621 C =14002.858685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.023 3.977 3 Si 1.079 2.921 4 H -0.286 1.286 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.607 4.607 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.316 5.316 11 C 0.051 3.949 12 C -0.284 4.284 13 C 0.256 3.744 14 N -0.609 5.609 15 C 0.581 3.419 16 O -0.511 6.511 17 C 0.061 3.939 18 C -0.071 4.071 19 C -0.096 4.096 20 C 0.074 3.926 21 O -0.312 6.312 22 C 0.409 3.591 23 F -0.194 7.194 24 F -0.194 7.194 25 C 0.042 3.958 26 N -0.420 5.420 27 N -0.296 5.296 28 H 0.267 0.733 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.169 0.831 32 H 0.162 0.838 33 H 0.422 0.578 34 H 0.164 0.836 35 H 0.157 0.843 36 H 0.189 0.811 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.613 -21.167 -7.720 31.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.182 4.182 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.646 4.646 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.098 5.098 11 C -0.099 4.099 12 C -0.315 4.315 13 C 0.003 3.997 14 N -0.256 5.256 15 C 0.365 3.635 16 O -0.384 6.384 17 C -0.077 4.077 18 C -0.092 4.092 19 C -0.122 4.122 20 C 0.027 3.973 21 O -0.228 6.228 22 C 0.319 3.681 23 F -0.176 7.176 24 F -0.176 7.176 25 C -0.120 4.120 26 N -0.132 5.132 27 N -0.127 5.127 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.186 0.814 32 H 0.180 0.820 33 H 0.259 0.741 34 H 0.181 0.819 35 H 0.174 0.826 36 H 0.205 0.795 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 20.604 -18.208 -8.077 28.658 hybrid contribution 0.774 -2.540 0.168 2.660 sum 21.378 -20.748 -7.909 30.823 Atomic orbital electron populations 1.70823 1.06777 1.30448 1.46061 1.25926 0.96316 1.02820 0.93132 0.83385 0.74729 0.74307 0.76949 1.21218 1.21198 1.20714 1.22135 0.95444 0.90399 1.56588 0.91764 1.19782 0.86302 0.82824 0.98042 1.48829 1.23285 1.19502 1.18144 1.22566 1.00456 0.90122 0.96718 1.21535 1.02219 1.06311 1.01480 1.19079 0.91495 0.94371 0.94734 1.42198 1.29060 1.24138 1.30214 1.17548 0.81952 0.80208 0.83781 1.90743 1.62087 1.60593 1.24981 1.21011 0.97608 0.94843 0.94270 1.22018 0.93255 0.94104 0.99797 1.20958 0.97003 1.01243 0.93016 1.20238 0.88608 0.94900 0.93514 1.86618 1.46236 1.50413 1.39507 1.23526 0.87739 0.78375 0.78439 1.93137 1.61114 1.96107 1.67232 1.93140 1.91403 1.42078 1.90947 1.23296 0.94038 0.93618 1.01016 1.67491 1.09755 1.30912 1.05020 1.77398 1.03362 1.16052 1.15910 0.92255 0.93561 0.94688 0.81377 0.82047 0.74116 0.81860 0.82555 0.79506 0.81344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.57 13.65 55.43 0.76 -25.81 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 25.29 29.90 -169.99 -5.08 20.21 16 4 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.61 -17.30 9.24 -34.44 -0.32 -17.62 16 8 H 0.06 1.92 7.81 -52.49 -0.41 1.51 16 9 C 0.25 6.36 5.57 -5.19 -0.03 6.33 16 10 N -0.32 -7.51 3.67 -62.56 -0.23 -7.74 16 11 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 12 C -0.28 -5.69 9.60 -39.83 -0.38 -6.08 16 13 C 0.26 5.37 8.11 -154.45 -1.25 4.12 16 14 N -0.61 -10.53 5.43 -11.98 -0.07 -10.60 16 15 C 0.58 9.07 7.77 -12.31 -0.10 8.97 16 16 O -0.51 -8.76 13.44 5.31 0.07 -8.68 16 17 C 0.06 0.76 6.74 -83.03 -0.56 0.20 16 18 C -0.07 -0.67 9.62 -39.09 -0.38 -1.05 16 19 C -0.10 -0.72 10.12 -39.18 -0.40 -1.12 16 20 C 0.07 0.61 6.51 -38.84 -0.25 0.36 16 21 O -0.31 -1.92 10.43 -18.87 -0.20 -2.11 16 22 C 0.41 1.63 5.98 101.05 0.60 2.23 16 23 F -0.19 -1.19 15.60 2.25 0.04 -1.15 16 24 F -0.19 -1.20 15.59 2.25 0.04 -1.17 16 25 C 0.04 0.42 9.44 -17.38 -0.16 0.26 16 26 N -0.42 -5.16 9.52 -9.68 -0.09 -5.25 16 27 N -0.30 -7.10 12.42 31.43 0.39 -6.71 16 28 H 0.27 7.66 7.22 -40.82 -0.29 7.36 16 29 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 30 H 0.04 0.93 8.00 -51.93 -0.42 0.52 16 31 H 0.17 2.73 8.06 -52.49 -0.42 2.31 16 32 H 0.16 3.05 5.91 -52.49 -0.31 2.74 16 33 H 0.42 6.69 8.14 -40.82 -0.33 6.35 16 34 H 0.16 1.33 7.63 -52.49 -0.40 0.92 16 35 H 0.16 0.70 8.06 -52.49 -0.42 0.27 16 36 H 0.19 -0.22 8.14 -51.93 -0.42 -0.64 16 37 H 0.17 1.51 5.11 -52.48 -0.27 1.24 16 LS Contribution 338.60 15.07 5.10 5.10 Total: -1.00 -35.15 338.60 -5.70 -40.85 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -2.91 Total: 5.06 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -3.52 Total: -2.00 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.76 Total: -56.11 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.13 Total: -10.80 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.07 Total: -2.32 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.08 Total: 20.21 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.15 -5.70 -40.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355519042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.559 kcal (2) G-P(sol) polarization free energy of solvation -35.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds