Wall clock time and date at job start Tue Mar 31 2020 20:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97758 * 124.71469 * 10 9 7 12 12 C 1.35229 * 107.86711 * 179.83522 * 11 10 9 13 13 C 1.40431 * 107.86689 * 0.42326 * 12 11 10 14 14 N 1.40069 * 125.97339 * 179.70003 * 13 12 11 15 15 C 1.34771 * 120.00314 * 0.02562 * 14 13 12 16 16 O 1.21564 * 119.99830 * 359.97438 * 15 14 13 17 17 C 1.47889 * 119.99817 * 179.97438 * 15 14 13 18 18 C 1.39487 * 119.65992 * 179.72974 * 17 15 14 19 19 C 1.38314 * 119.13677 * 179.73051 * 18 17 15 20 20 C 1.39243 * 118.44194 * 0.52504 * 19 18 17 21 21 O 1.35721 * 120.37870 * 179.75534 * 20 19 18 22 22 C 1.42900 * 117.00206 * 179.97438 * 21 20 19 23 23 F 1.39900 * 109.46592 * 300.00084 * 22 21 20 24 24 F 1.39902 * 109.47050 * 59.99310 * 22 21 20 25 25 C 1.39230 * 119.23582 * 359.73531 * 20 19 18 26 26 N 1.31373 * 120.81295 * 359.97438 * 25 20 19 27 27 N 1.31239 * 108.04544 * 359.74026 * 13 12 11 28 28 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 30 30 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 31 31 H 1.08002 * 126.06186 * 359.96239 * 11 10 9 32 32 H 1.07992 * 126.06790 * 180.15633 * 12 11 10 33 33 H 0.97002 * 119.99193 * 180.02562 * 14 13 12 34 34 H 1.08000 * 120.43243 * 359.97438 * 18 17 15 35 35 H 1.07998 * 120.78095 * 180.25848 * 19 18 17 36 36 H 1.08991 * 109.47369 * 179.97438 * 22 21 20 37 37 H 1.08004 * 119.58920 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8836 12 6 3.2624 -5.4441 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9601 -5.4617 -1.3034 15 6 5.5263 -6.6027 -0.8628 16 8 5.0884 -7.1556 0.1273 17 6 6.6802 -7.1819 -1.5840 18 6 7.2644 -8.3600 -1.1185 19 6 8.3395 -8.8953 -1.8045 20 6 8.8056 -8.2262 -2.9333 21 8 9.8612 -8.7139 -3.6331 22 6 10.2790 -7.9700 -4.7795 23 9 9.2240 -7.8932 -5.6952 24 9 10.6513 -6.6796 -4.3878 25 6 8.1759 -7.0515 -3.3359 26 7 7.1528 -6.5725 -2.6652 27 7 3.2287 -3.8132 -0.9445 28 1 -0.4850 -0.8400 0.0004 29 1 0.6281 -2.5591 0.8866 30 1 0.6207 -2.5548 -0.8933 31 1 1.5912 -4.7502 1.7306 32 1 3.5577 -6.3465 1.0448 33 1 5.3097 -5.0203 -2.0932 34 1 6.8796 -8.8499 -0.2363 35 1 8.8093 -9.8084 -1.4701 36 1 11.1294 -8.4676 -5.2454 37 1 8.5329 -6.5278 -4.2103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355519042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:48 Heat of formation + Delta-G solvation = -78.021078 kcal Electronic energy + Delta-G solvation = -27400.666524 eV Core-core repulsion = 22815.338448 eV Total energy + Delta-G solvation = -4585.328076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.39370 -48.39282 -42.46527 -41.88588 -40.54723 -39.07612 -36.52760 -35.61077 -33.74474 -32.91061 -31.90811 -31.06331 -28.39356 -27.49855 -25.98067 -25.10089 -24.54733 -23.08984 -22.19357 -21.21027 -20.33826 -19.56492 -19.30860 -19.11738 -18.96918 -18.19844 -17.43851 -17.05595 -16.84795 -16.54779 -16.29427 -16.09350 -15.77845 -15.60505 -15.35807 -15.10477 -15.00852 -14.72981 -14.52195 -14.41360 -14.25783 -14.12839 -13.99520 -13.89886 -13.73994 -13.24706 -12.97128 -12.61665 -12.09760 -11.99131 -11.75931 -11.38366 -11.10737 -11.02583 -10.84894 -10.69825 -10.04816 -9.87370 -9.25081 -8.79376 -6.57038 -0.69598 -0.06043 0.87220 1.18384 1.34197 1.35877 1.49467 1.57360 1.77615 2.03445 2.15462 2.46864 2.47447 2.58206 2.83799 2.99890 3.17702 3.41622 3.57828 3.60872 3.72482 3.83704 3.95140 4.11623 4.28891 4.50737 4.53929 4.64886 4.73927 4.79187 4.80876 5.00070 5.02741 5.52205 5.53551 5.75342 5.90140 6.02559 6.25321 6.39729 6.41882 6.81645 6.92293 7.18221 8.57227 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.016206 B = 0.002202 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.339869 B =12714.413621 C =14002.858685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.018 4.018 3 Si 1.122 2.878 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.622 4.622 8 H 0.043 0.957 9 C 0.259 3.741 10 N -0.341 5.341 11 C 0.059 3.941 12 C -0.288 4.288 13 C 0.263 3.737 14 N -0.613 5.613 15 C 0.583 3.417 16 O -0.528 6.528 17 C 0.033 3.967 18 C -0.061 4.061 19 C -0.086 4.086 20 C 0.085 3.915 21 O -0.306 6.306 22 C 0.401 3.599 23 F -0.208 7.208 24 F -0.208 7.208 25 C 0.028 3.972 26 N -0.443 5.443 27 N -0.346 5.346 28 H 0.261 0.739 29 H 0.058 0.942 30 H 0.017 0.983 31 H 0.207 0.793 32 H 0.176 0.824 33 H 0.425 0.575 34 H 0.177 0.823 35 H 0.195 0.805 36 H 0.246 0.754 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.958 -22.961 -7.582 34.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.218 4.218 3 Si 0.943 3.057 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.660 4.660 8 H 0.061 0.939 9 C 0.139 3.861 10 N -0.123 5.123 11 C -0.090 4.090 12 C -0.319 4.319 13 C 0.009 3.991 14 N -0.261 5.261 15 C 0.370 3.630 16 O -0.402 6.402 17 C -0.104 4.104 18 C -0.082 4.082 19 C -0.111 4.111 20 C 0.038 3.962 21 O -0.221 6.221 22 C 0.313 3.687 23 F -0.190 7.190 24 F -0.190 7.190 25 C -0.134 4.134 26 N -0.155 5.155 27 N -0.177 5.177 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.224 0.776 32 H 0.193 0.807 33 H 0.263 0.737 34 H 0.194 0.806 35 H 0.212 0.788 36 H 0.261 0.739 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 22.964 -20.045 -7.939 31.498 hybrid contribution 0.213 -2.173 0.034 2.184 sum 23.177 -22.218 -7.905 33.065 Atomic orbital electron populations 1.70915 1.07373 1.30224 1.47336 1.27267 0.96463 1.06030 0.92057 0.82850 0.73777 0.71018 0.78085 1.19199 1.20785 1.19928 1.22302 0.94610 0.92200 1.56892 0.93873 1.19456 0.86372 0.82700 0.97530 1.48622 1.23869 1.20243 1.19603 1.23243 1.00531 0.88545 0.96633 1.21772 1.02122 1.06696 1.01273 1.19445 0.91533 0.93388 0.94752 1.42384 1.28445 1.24854 1.30387 1.18086 0.82203 0.79165 0.83526 1.90700 1.62882 1.60849 1.25818 1.20644 0.97835 0.96550 0.95398 1.22192 0.93238 0.92725 1.00017 1.21339 0.95878 1.01934 0.91988 1.20348 0.88459 0.93876 0.93491 1.86659 1.44987 1.50541 1.39939 1.24551 0.88562 0.78047 0.77534 1.93112 1.62139 1.96137 1.67577 1.93114 1.91408 1.43399 1.91070 1.23444 0.93984 0.94719 1.01246 1.67340 1.10852 1.31882 1.05443 1.77308 1.04789 1.18122 1.17455 0.92895 0.92446 0.96509 0.77612 0.80696 0.73684 0.80553 0.78766 0.73850 0.80911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.55 13.65 21.45 0.29 -54.26 16 2 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 3 Si 1.12 50.86 29.90 68.60 2.05 52.91 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.62 -36.23 9.24 25.60 0.24 -35.99 16 8 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 9 C 0.26 13.58 5.57 85.64 0.48 14.06 16 10 N -0.34 -16.56 3.67 -351.84 -1.29 -17.85 16 11 C 0.06 2.34 11.43 83.52 0.95 3.30 16 12 C -0.29 -11.46 9.60 22.11 0.21 -11.25 16 13 C 0.26 11.24 8.11 133.36 1.08 12.33 16 14 N -0.61 -21.73 5.43 -310.09 -1.69 -23.41 16 15 C 0.58 18.30 7.77 86.80 0.67 18.97 16 16 O -0.53 -17.89 13.44 -3.92 -0.05 -17.94 16 17 C 0.03 0.81 6.74 41.85 0.28 1.09 16 18 C -0.06 -1.04 9.62 22.59 0.22 -0.82 16 19 C -0.09 -1.01 10.12 22.53 0.23 -0.79 16 20 C 0.09 1.22 6.51 22.75 0.15 1.37 16 21 O -0.31 -2.76 10.43 -90.43 -0.94 -3.71 16 22 C 0.40 2.05 5.98 113.37 0.68 2.73 16 23 F -0.21 -2.16 15.60 44.97 0.70 -1.46 16 24 F -0.21 -2.20 15.59 44.97 0.70 -1.50 16 25 C 0.03 0.54 9.44 85.00 0.80 1.35 16 26 N -0.44 -10.87 9.52 -184.54 -1.76 -12.63 16 27 N -0.35 -17.11 12.42 -54.48 -0.68 -17.79 16 28 H 0.26 15.27 7.22 -92.71 -0.67 14.60 16 29 H 0.06 2.86 7.94 -2.39 -0.02 2.84 16 30 H 0.02 0.94 8.00 -2.39 -0.02 0.92 16 31 H 0.21 6.32 8.06 -2.91 -0.02 6.29 16 32 H 0.18 6.47 5.91 -2.91 -0.02 6.45 16 33 H 0.43 14.11 8.14 -92.71 -0.75 13.36 16 34 H 0.18 2.47 7.63 -2.91 -0.02 2.44 16 35 H 0.20 0.80 8.06 -2.91 -0.02 0.78 16 36 H 0.25 -1.65 8.14 -2.39 -0.02 -1.67 16 37 H 0.17 3.01 5.11 -2.91 -0.01 3.00 16 Total: -1.00 -78.22 338.60 4.31 -73.91 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.51 Total: 17.97 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 6.45 Total: 5.75 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -5.12 Total: -125.93 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -1.00 Total: -21.65 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 1.40 Total: -2.96 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.05 Total: 52.91 kcal Total: -78.22 4.31 -73.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355519042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.115 kcal (2) G-P(sol) polarization free energy of solvation -78.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds