Wall clock time and date at job start Tue Mar 31 2020 20:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00126 * 2 1 4 4 O 1.20827 * 119.99909 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00060 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46730 * 179.97438 * 5 3 2 7 7 C 1.33302 * 120.00275 * 280.66137 * 6 5 3 8 8 H 1.08003 * 120.00344 * 316.14108 * 7 6 5 9 9 C 1.46789 * 120.00167 * 136.13842 * 7 6 5 10 10 N 1.29317 * 119.99451 * 339.42184 * 9 7 6 11 11 Si 1.86797 * 120.00130 * 159.42568 * 9 7 6 12 12 H 1.48508 * 109.47261 * 90.00182 * 11 9 7 13 13 H 1.48500 * 109.46984 * 209.99858 * 11 9 7 14 14 H 1.48495 * 109.47202 * 330.00166 * 11 9 7 15 15 C 1.34778 * 119.99625 * 100.67026 * 6 5 3 16 16 O 1.21515 * 119.99564 * 187.16374 * 15 6 5 17 17 C 1.47365 * 120.00426 * 7.15387 * 15 6 5 18 18 C 1.39811 * 120.19954 * 322.69964 * 17 15 6 19 19 C 1.37743 * 119.89501 * 179.97438 * 18 17 15 20 20 C 1.38587 * 120.31919 * 0.02562 * 19 18 17 21 21 C 1.38057 * 120.40780 * 359.97438 * 20 19 18 22 22 N 1.48018 * 119.95365 * 179.97438 * 21 20 19 23 23 O 1.31703 * 119.99720 * 0.02562 * 22 21 20 24 24 O 1.31702 * 119.99912 * 179.72587 * 22 21 20 25 25 C 1.38699 * 120.09250 * 0.25963 * 21 20 19 26 26 O 1.35634 * 120.15694 * 179.72298 * 25 21 20 27 27 C 1.42902 * 117.00074 * 89.99991 * 26 25 21 28 28 H 1.09001 * 109.47338 * 299.99873 * 1 2 3 29 29 H 1.09002 * 109.46862 * 59.99938 * 1 2 3 30 30 H 1.09000 * 109.47115 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46910 * 59.99976 * 5 3 2 32 32 H 1.08997 * 109.46904 * 300.00277 * 5 3 2 33 33 H 0.97003 * 119.99294 * 185.04644 * 10 9 7 34 34 H 1.07993 * 120.05259 * 0.02562 * 18 17 15 35 35 H 1.08002 * 119.84279 * 179.97438 * 19 18 17 36 36 H 1.08001 * 119.79883 * 180.02562 * 20 19 18 37 37 H 1.08994 * 109.47317 * 59.99658 * 27 26 25 38 38 H 1.09001 * 109.46827 * 180.02562 * 27 26 25 39 39 H 1.09004 * 109.46567 * 299.99478 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 3.9663 3.3788 -1.1351 8 1 4.3456 2.9388 -2.0456 9 6 3.4337 4.7466 -1.1475 10 7 2.6349 5.1379 -0.2088 11 14 3.9099 5.9219 -2.5191 12 1 2.9384 5.7992 -3.6356 13 1 3.8984 7.3146 -2.0038 14 1 5.2711 5.5862 -3.0083 15 6 4.3794 3.2654 1.1467 16 8 4.5989 4.4603 1.1743 17 6 4.5480 2.4569 2.3672 18 6 3.6652 1.4085 2.6437 19 6 3.8289 0.6565 3.7861 20 6 4.8648 0.9340 4.6639 21 6 5.7439 1.9661 4.4035 22 7 6.8463 2.2541 5.3483 23 8 6.9883 1.5256 6.4362 24 8 7.6887 3.2351 5.0980 25 6 5.5920 2.7374 3.2607 26 8 6.4515 3.7553 3.0064 27 6 7.6197 3.4430 2.2448 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7809 0.8908 33 1 2.2253 6.0160 -0.2554 34 1 2.8568 1.1882 1.9624 35 1 3.1463 -0.1529 3.9991 36 1 4.9855 0.3387 5.5569 37 1 7.3248 3.0579 1.2687 38 1 8.2198 4.3436 2.1144 39 1 8.2057 2.6894 2.7710 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356170316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:54 Heat of formation + Delta-G solvation = -42.614334 kcal Electronic energy + Delta-G solvation = -30836.726011 eV Core-core repulsion = 26331.728051 eV Total energy + Delta-G solvation = -4504.997960 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -40.91287 -39.94537 -38.64638 -37.85416 -37.29275 -35.92328 -34.35547 -34.14104 -32.71922 -31.53781 -30.59195 -28.81111 -27.16568 -26.62226 -26.09342 -25.10565 -22.87345 -22.18233 -21.01622 -20.00118 -18.60072 -17.99843 -17.61806 -17.23988 -16.93506 -16.30860 -16.19705 -16.05503 -16.00611 -15.42621 -15.23301 -14.97168 -14.76862 -14.24131 -13.73821 -13.49033 -13.30108 -13.16661 -12.78481 -12.51338 -12.35910 -12.11417 -11.84257 -11.67802 -11.41031 -11.24646 -11.15970 -11.04688 -10.89593 -10.86835 -10.49239 -10.41928 -10.36690 -9.90827 -9.86718 -9.44211 -9.05955 -8.96917 -8.43373 -7.60441 -6.40298 -3.95167 -0.55545 0.73975 1.11966 1.26986 2.73479 2.87299 3.10795 3.17271 3.26027 3.26913 3.61454 4.01405 4.18019 4.33177 4.60222 4.70588 4.79252 4.94412 4.95397 5.05346 5.25024 5.29980 5.35036 5.39979 5.45733 5.46466 5.60728 5.68405 5.74959 5.77183 5.80432 5.91340 6.01138 6.04521 6.30090 6.78501 6.95181 7.25111 7.45142 7.85136 8.33938 8.57433 8.90497 9.22260 9.98292 10.59537 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.005329 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.889572 B = 5252.858403 C = 7320.256497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.377 6.377 3 C 0.417 3.583 4 O -0.446 6.446 5 C 0.083 3.917 6 N -0.393 5.393 7 C -0.390 4.390 8 H 0.090 0.910 9 C 0.087 3.913 10 N -0.752 5.752 11 Si 0.915 3.085 12 H -0.279 1.279 13 H -0.281 1.281 14 H -0.264 1.264 15 C 0.488 3.512 16 O -0.493 6.493 17 C -0.117 4.117 18 C -0.058 4.058 19 C -0.125 4.125 20 C -0.053 4.053 21 C -0.035 4.035 22 N -0.010 5.010 23 O -0.199 6.199 24 O -0.148 6.148 25 C 0.206 3.794 26 O -0.298 6.298 27 C 0.052 3.948 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.274 0.726 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.052 0.948 38 H 0.103 0.897 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.073 -12.464 2.454 12.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.295 6.295 3 C 0.254 3.746 4 O -0.327 6.327 5 C -0.042 4.042 6 N -0.112 5.112 7 C -0.518 4.518 8 H 0.107 0.893 9 C -0.137 4.137 10 N -0.377 5.377 11 Si 0.740 3.260 12 H -0.205 1.205 13 H -0.206 1.206 14 H -0.188 1.188 15 C 0.277 3.723 16 O -0.369 6.369 17 C -0.122 4.122 18 C -0.077 4.077 19 C -0.144 4.144 20 C -0.073 4.073 21 C -0.122 4.122 22 N 0.467 4.533 23 O -0.385 6.385 24 O -0.347 6.347 25 C 0.158 3.842 26 O -0.213 6.213 27 C -0.041 4.041 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.163 0.837 35 H 0.169 0.831 36 H 0.174 0.826 37 H 0.071 0.929 38 H 0.121 0.879 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.770 -11.251 2.269 11.503 hybrid contribution -0.101 0.424 -0.336 0.551 sum -0.870 -10.827 1.933 11.032 Atomic orbital electron populations 1.23108 0.77769 1.02651 1.02299 1.86548 1.22488 1.35049 1.85413 1.25054 0.93217 0.81569 0.74717 1.90833 1.65896 1.35412 1.40518 1.22012 0.86658 0.90657 1.04918 1.41818 1.53661 1.07399 1.08336 1.19749 1.46746 0.96838 0.88418 0.89259 1.26897 0.92503 0.98544 0.95741 1.68903 1.19108 1.19122 1.30575 0.86191 0.79672 0.79674 0.80437 1.20487 1.20601 1.18805 1.17320 0.84964 0.87765 0.82229 1.90693 1.50956 1.13004 1.82228 1.21171 0.95838 0.97517 0.97717 1.22096 0.97119 0.92435 0.96063 1.21102 0.98091 1.01532 0.93642 1.20993 0.92136 0.93784 1.00392 1.20834 0.93669 1.03624 0.94104 1.50259 1.01355 1.00092 1.01554 1.96230 1.81326 1.47357 1.13588 1.96303 1.37904 1.19071 1.81436 1.18399 0.91039 0.85522 0.89260 1.86045 1.33197 1.28816 1.73269 1.22955 0.84628 1.02809 0.93696 0.92432 0.92293 0.88870 0.87816 0.87628 0.91373 0.83681 0.83119 0.82640 0.92906 0.87850 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.49 16 2 O -0.38 -5.51 10.57 -39.26 -0.41 -5.92 16 3 C 0.42 7.60 6.01 36.01 0.22 7.82 16 4 O -0.45 -10.21 15.86 -18.75 -0.30 -10.50 16 5 C 0.08 1.44 5.45 -5.19 -0.03 1.41 16 6 N -0.39 -8.96 2.09 -115.79 -0.24 -9.20 16 7 C -0.39 -9.81 8.96 -13.46 -0.12 -9.93 16 8 H 0.09 2.12 8.01 -52.48 -0.42 1.70 16 9 C 0.09 2.30 4.45 -15.16 -0.07 2.23 16 10 N -0.75 -21.07 11.72 56.00 0.66 -20.41 16 11 Si 0.91 20.39 29.69 -169.99 -5.05 15.34 16 12 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 15 C 0.49 11.63 6.69 -12.55 -0.08 11.55 16 16 O -0.49 -13.84 13.40 -11.72 -0.16 -13.99 16 17 C -0.12 -2.26 5.42 -104.84 -0.57 -2.83 16 18 C -0.06 -0.88 7.36 -39.17 -0.29 -1.17 16 19 C -0.12 -1.46 10.02 -39.63 -0.40 -1.85 16 20 C -0.05 -0.68 9.57 -39.52 -0.38 -1.06 16 21 C -0.03 -0.58 6.89 -79.84 -0.55 -1.13 16 22 N -0.01 -0.18 4.98 34.01 0.17 -0.01 16 23 O -0.20 -3.46 19.14 -31.57 -0.60 -4.06 16 24 O -0.15 -2.83 16.58 -39.22 -0.65 -3.48 16 25 C 0.21 3.91 5.69 -38.65 -0.22 3.69 16 26 O -0.30 -6.08 7.45 -48.07 -0.36 -6.44 16 27 C 0.05 0.86 10.37 101.05 1.05 1.91 16 28 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 29 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.57 8.11 -51.93 -0.42 1.15 16 32 H 0.11 1.53 4.25 -51.93 -0.22 1.31 16 33 H 0.27 7.32 8.27 -40.82 -0.34 6.98 16 34 H 0.15 2.23 3.97 -52.49 -0.21 2.02 16 35 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.16 1.61 7.56 -52.49 -0.40 1.21 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.04 0.62 7.43 -51.93 -0.39 0.23 16 LS Contribution 346.58 15.07 5.22 5.22 Total: -1.00 -34.65 346.58 -5.81 -40.47 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -3.72 Total: 0.87 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -0.37 Total: 12.14 kcal Atomic # 7 Polarization: -30.22 SS G_CDS: 0.58 Total: -29.63 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -2.48 Total: -44.41 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.05 Total: 15.34 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.65 -5.81 -40.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356170316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.149 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds