Wall clock time and date at job start Tue Mar 31 2020 20:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00126 * 2 1 4 4 O 1.20827 * 119.99909 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00060 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46730 * 179.97438 * 5 3 2 7 7 C 1.33302 * 120.00275 * 280.66137 * 6 5 3 8 8 H 1.08003 * 120.00344 * 316.14108 * 7 6 5 9 9 C 1.46789 * 120.00167 * 136.13842 * 7 6 5 10 10 N 1.29317 * 119.99451 * 339.42184 * 9 7 6 11 11 Si 1.86797 * 120.00130 * 159.42568 * 9 7 6 12 12 H 1.48508 * 109.47261 * 90.00182 * 11 9 7 13 13 H 1.48500 * 109.46984 * 209.99858 * 11 9 7 14 14 H 1.48495 * 109.47202 * 330.00166 * 11 9 7 15 15 C 1.34778 * 119.99625 * 100.67026 * 6 5 3 16 16 O 1.21515 * 119.99564 * 187.16374 * 15 6 5 17 17 C 1.47365 * 120.00426 * 7.15387 * 15 6 5 18 18 C 1.39811 * 120.19954 * 322.69964 * 17 15 6 19 19 C 1.37743 * 119.89501 * 179.97438 * 18 17 15 20 20 C 1.38587 * 120.31919 * 0.02562 * 19 18 17 21 21 C 1.38057 * 120.40780 * 359.97438 * 20 19 18 22 22 N 1.48018 * 119.95365 * 179.97438 * 21 20 19 23 23 O 1.31703 * 119.99720 * 0.02562 * 22 21 20 24 24 O 1.31702 * 119.99912 * 179.72587 * 22 21 20 25 25 C 1.38699 * 120.09250 * 0.25963 * 21 20 19 26 26 O 1.35634 * 120.15694 * 179.72298 * 25 21 20 27 27 C 1.42902 * 117.00074 * 89.99991 * 26 25 21 28 28 H 1.09001 * 109.47338 * 299.99873 * 1 2 3 29 29 H 1.09002 * 109.46862 * 59.99938 * 1 2 3 30 30 H 1.09000 * 109.47115 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46910 * 59.99976 * 5 3 2 32 32 H 1.08997 * 109.46904 * 300.00277 * 5 3 2 33 33 H 0.97003 * 119.99294 * 185.04644 * 10 9 7 34 34 H 1.07993 * 120.05259 * 0.02562 * 18 17 15 35 35 H 1.08002 * 119.84279 * 179.97438 * 19 18 17 36 36 H 1.08001 * 119.79883 * 180.02562 * 20 19 18 37 37 H 1.08994 * 109.47317 * 59.99658 * 27 26 25 38 38 H 1.09001 * 109.46827 * 180.02562 * 27 26 25 39 39 H 1.09004 * 109.46567 * 299.99478 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9816 2.6798 -0.0002 7 6 3.9663 3.3788 -1.1351 8 1 4.3456 2.9388 -2.0456 9 6 3.4337 4.7466 -1.1475 10 7 2.6349 5.1379 -0.2088 11 14 3.9099 5.9219 -2.5191 12 1 2.9384 5.7992 -3.6356 13 1 3.8984 7.3146 -2.0038 14 1 5.2711 5.5862 -3.0083 15 6 4.3794 3.2654 1.1467 16 8 4.5989 4.4603 1.1743 17 6 4.5480 2.4569 2.3672 18 6 3.6652 1.4085 2.6437 19 6 3.8289 0.6565 3.7861 20 6 4.8648 0.9340 4.6639 21 6 5.7439 1.9661 4.4035 22 7 6.8463 2.2541 5.3483 23 8 6.9883 1.5256 6.4362 24 8 7.6887 3.2351 5.0980 25 6 5.5920 2.7374 3.2607 26 8 6.4515 3.7553 3.0064 27 6 7.6197 3.4430 2.2448 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7809 0.8908 33 1 2.2253 6.0160 -0.2554 34 1 2.8568 1.1882 1.9624 35 1 3.1463 -0.1529 3.9991 36 1 4.9855 0.3387 5.5569 37 1 7.3248 3.0579 1.2687 38 1 8.2198 4.3436 2.1144 39 1 8.2057 2.6894 2.7710 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356170316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:53 Heat of formation + Delta-G solvation = -64.893565 kcal Electronic energy + Delta-G solvation = -30837.692111 eV Core-core repulsion = 26331.728051 eV Total energy + Delta-G solvation = -4505.964060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.30988 -41.32802 -40.14272 -39.32246 -38.64146 -37.34746 -36.09261 -35.51735 -34.44248 -32.99475 -31.89065 -30.19757 -28.51686 -27.84453 -27.41795 -26.72992 -24.37443 -23.46157 -22.44386 -21.53242 -20.06782 -19.38205 -18.90609 -18.68045 -18.54844 -17.78511 -17.54171 -17.41540 -17.33961 -16.85321 -16.64961 -16.53093 -16.10708 -15.87550 -15.16248 -14.96190 -14.65683 -14.53590 -14.10293 -13.89557 -13.66767 -13.53907 -13.38313 -12.92992 -12.81486 -12.78012 -12.71043 -12.56348 -12.54981 -12.21822 -12.15866 -11.88933 -11.64375 -11.41475 -11.28955 -10.90399 -10.76902 -10.30738 -10.14097 -9.42750 -8.28962 -5.87181 -1.89447 -0.51494 -0.16594 -0.03903 1.32247 1.35118 1.42168 1.48772 1.59197 1.90912 2.27675 2.28172 2.62342 2.73560 3.14726 3.33178 3.43635 3.57747 3.71254 3.75872 4.00351 4.07849 4.16014 4.26606 4.28657 4.39369 4.43100 4.46105 4.46697 4.56991 4.61378 4.74682 4.78835 4.86454 5.18158 5.33906 5.47870 5.57150 6.01599 6.11808 6.73705 6.96132 7.16475 7.45733 8.22292 8.72155 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.005329 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.889572 B = 5252.858403 C = 7320.256497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.427 3.573 4 O -0.499 6.499 5 C 0.082 3.918 6 N -0.408 5.408 7 C -0.416 4.416 8 H 0.094 0.906 9 C 0.042 3.958 10 N -0.799 5.799 11 Si 0.968 3.032 12 H -0.265 1.265 13 H -0.294 1.294 14 H -0.258 1.258 15 C 0.485 3.515 16 O -0.551 6.551 17 C -0.146 4.146 18 C -0.046 4.046 19 C -0.094 4.094 20 C -0.018 4.018 21 C -0.048 4.048 22 N -0.009 5.009 23 O -0.158 6.158 24 O -0.210 6.210 25 C 0.188 3.812 26 O -0.331 6.331 27 C 0.055 3.945 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.140 0.860 31 H 0.129 0.871 32 H 0.140 0.860 33 H 0.265 0.735 34 H 0.147 0.853 35 H 0.213 0.787 36 H 0.198 0.802 37 H 0.043 0.957 38 H 0.110 0.890 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 -17.144 4.243 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.278 6.278 3 C 0.267 3.733 4 O -0.384 6.384 5 C -0.042 4.042 6 N -0.126 5.126 7 C -0.544 4.544 8 H 0.111 0.889 9 C -0.177 4.177 10 N -0.427 5.427 11 Si 0.792 3.208 12 H -0.191 1.191 13 H -0.220 1.220 14 H -0.182 1.182 15 C 0.275 3.725 16 O -0.431 6.431 17 C -0.151 4.151 18 C -0.065 4.065 19 C -0.112 4.112 20 C -0.038 4.038 21 C -0.135 4.135 22 N 0.466 4.534 23 O -0.358 6.358 24 O -0.393 6.393 25 C 0.140 3.860 26 O -0.247 6.247 27 C -0.038 4.038 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.158 0.842 31 H 0.146 0.854 32 H 0.157 0.843 33 H 0.076 0.924 34 H 0.165 0.835 35 H 0.230 0.770 36 H 0.215 0.785 37 H 0.062 0.938 38 H 0.128 0.872 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.457 -15.887 3.950 16.435 hybrid contribution 0.077 1.473 -0.595 1.591 sum -1.380 -14.414 3.356 14.863 Atomic orbital electron populations 1.23458 0.75718 1.05481 1.01740 1.86514 1.24236 1.32507 1.84507 1.24962 0.93361 0.81685 0.73269 1.90844 1.66985 1.37391 1.43197 1.22163 0.86631 0.87713 1.07740 1.41845 1.54241 1.09065 1.07489 1.19897 1.47543 0.97518 0.89427 0.88888 1.27671 0.92330 1.00259 0.97471 1.69032 1.21646 1.18964 1.33023 0.85385 0.79802 0.77147 0.78510 1.19069 1.21990 1.18172 1.17976 0.83267 0.87583 0.83687 1.90638 1.52943 1.15811 1.83703 1.20836 0.98115 0.99187 0.97008 1.22236 0.95774 0.90991 0.97474 1.21708 0.97578 1.01193 0.90685 1.21670 0.89764 0.91247 1.01072 1.21053 0.94328 1.04721 0.93429 1.50419 1.01543 0.99849 1.01570 1.96188 1.80379 1.46059 1.13150 1.96339 1.39645 1.20857 1.82498 1.18575 0.91125 0.86019 0.90320 1.85985 1.34283 1.30637 1.73771 1.23012 0.84080 1.03623 0.93091 0.92543 0.93523 0.84194 0.85374 0.84336 0.92409 0.83525 0.76987 0.78468 0.93823 0.87168 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -9.39 10.57 -51.44 -0.54 -9.94 16 3 C 0.43 15.01 6.01 71.24 0.43 15.44 16 4 O -0.50 -23.16 15.86 21.96 0.35 -22.81 16 5 C 0.08 2.73 5.45 85.63 0.47 3.20 16 6 N -0.41 -19.03 2.09 -638.53 -1.33 -20.36 16 7 C -0.42 -21.76 8.96 86.71 0.78 -20.98 16 8 H 0.09 4.58 8.01 -2.91 -0.02 4.55 16 9 C 0.04 2.30 4.45 87.30 0.39 2.69 16 10 N -0.80 -47.77 11.72 23.26 0.27 -47.50 16 11 Si 0.97 44.18 29.69 68.60 2.04 46.21 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 13 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 14 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 15 C 0.48 23.96 6.69 86.65 0.58 24.53 16 16 O -0.55 -32.99 13.40 12.56 0.17 -32.82 16 17 C -0.15 -5.58 5.42 -20.00 -0.11 -5.69 16 18 C -0.05 -1.23 7.36 22.53 0.17 -1.06 16 19 C -0.09 -1.54 10.02 22.24 0.22 -1.32 16 20 C -0.02 -0.36 9.57 22.31 0.21 -0.14 16 21 C -0.05 -1.45 6.89 36.44 0.25 -1.20 16 22 N -0.01 -0.31 4.98 -46.30 -0.23 -0.54 16 23 O -0.16 -4.86 19.14 3.51 0.07 -4.80 16 24 O -0.21 -8.15 16.58 10.83 0.18 -7.97 16 25 C 0.19 7.06 5.69 22.87 0.13 7.19 16 26 O -0.33 -14.11 7.45 -61.29 -0.46 -14.57 16 27 C 0.05 1.90 10.37 113.37 1.18 3.08 16 28 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 29 H 0.05 1.10 8.13 -2.39 -0.02 1.08 16 30 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.13 3.63 8.11 -2.39 -0.02 3.61 16 32 H 0.14 3.61 4.25 -2.39 -0.01 3.60 16 33 H 0.26 15.29 8.27 -92.71 -0.77 14.52 16 34 H 0.15 4.00 3.97 -2.91 -0.01 3.99 16 35 H 0.21 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.20 2.38 7.56 -2.91 -0.02 2.36 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 39 H 0.06 1.74 7.43 -2.38 -0.02 1.73 16 Total: -1.00 -85.06 346.58 7.53 -77.53 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 1.13 Total: 10.02 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: 5.89 Total: 27.54 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -1.29 Total: -68.40 kcal Atomic # 8 Polarization: -92.66 SS G_CDS: -0.24 Total: -92.90 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.04 Total: 46.21 kcal Total: -85.06 7.53 -77.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356170316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.635 kcal (2) G-P(sol) polarization free energy of solvation -85.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds