Wall clock time and date at job start Tue Mar 31 2020 20:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99485 * 2 1 4 4 H 1.48494 * 109.47177 * 269.99875 * 3 2 1 5 5 H 1.48505 * 109.47036 * 30.00159 * 3 2 1 6 6 H 1.48499 * 109.46776 * 149.99648 * 3 2 1 7 7 C 1.38941 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00369 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.34779 * 119.99872 * 179.97438 * 13 12 10 15 15 O 1.21590 * 120.00297 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99768 * 180.02562 * 14 13 12 17 17 C 1.46979 * 127.03153 * 0.02665 * 16 14 13 18 18 C 1.50769 * 106.56215 * 180.02562 * 17 16 14 19 19 O 1.21283 * 125.42820 * 179.97438 * 18 17 16 20 20 N 1.34298 * 109.15224 * 359.97438 * 18 17 16 21 21 C 1.46503 * 124.85613 * 180.02562 * 20 18 17 22 22 C 1.52997 * 109.47353 * 90.02377 * 21 20 18 23 23 F 1.39905 * 109.47191 * 59.99992 * 22 21 20 24 24 F 1.39900 * 109.46893 * 179.97438 * 22 21 20 25 25 F 1.39901 * 109.47198 * 299.99991 * 22 21 20 26 26 C 1.46227 * 110.29143 * 359.73119 * 20 18 17 27 27 H 0.96993 * 120.00255 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 30 30 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 31 31 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 32 32 H 1.08994 * 110.04132 * 299.27537 * 17 16 14 33 33 H 1.08997 * 110.04030 * 60.72550 * 17 16 14 34 34 H 1.09004 * 109.47104 * 210.02721 * 21 20 18 35 35 H 1.08995 * 109.46771 * 330.02230 * 21 20 18 36 36 H 1.09004 * 109.88579 * 240.70987 * 26 20 18 37 37 H 1.08996 * 109.62404 * 120.01459 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4691 -2.1386 0.0005 9 7 3.3799 -1.2031 0.0011 10 6 4.0539 -2.3703 0.0011 11 8 3.4475 -3.4208 0.0011 12 6 5.5609 -2.3701 0.0022 13 7 6.0493 -3.7513 0.0026 14 6 7.3745 -3.9975 0.0031 15 8 8.1645 -3.0733 0.0037 16 7 7.8238 -5.2682 0.0029 17 6 7.0127 -6.4939 0.0017 18 6 7.9806 -7.6498 0.0027 19 8 7.6743 -8.8233 0.0025 20 7 9.2362 -7.1731 0.0038 21 6 10.4457 -7.9998 0.0044 22 6 10.8682 -8.2867 -1.4378 23 9 11.1284 -7.0800 -2.0963 24 9 12.0235 -9.0756 -1.4371 25 9 9.8393 -8.9661 -2.0988 26 6 9.2234 -5.7109 -0.0028 27 1 -0.4850 0.8400 -0.0004 28 1 3.8649 -0.3630 0.0007 29 1 5.9249 -1.8559 -0.8873 30 1 5.9236 -1.8566 0.8927 31 1 5.4191 -4.4887 0.0018 32 1 6.3882 -6.5295 0.8943 33 1 6.3898 -6.5287 -0.8921 34 1 11.2473 -7.4704 0.5194 35 1 10.2429 -8.9399 0.5174 36 1 9.7240 -5.3398 -0.8972 37 1 9.7315 -5.3364 0.8858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358308280.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:00 Heat of formation + Delta-G solvation = -215.339100 kcal Electronic energy + Delta-G solvation = -29042.946179 eV Core-core repulsion = 24020.894322 eV Total energy + Delta-G solvation = -5022.051857 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.54410 -48.08962 -48.00306 -41.49274 -39.74277 -38.46801 -37.16473 -35.04843 -34.63792 -33.84614 -31.86228 -30.59501 -28.92262 -28.02811 -25.61191 -24.17267 -23.91721 -21.00935 -20.61088 -19.76543 -19.16716 -19.00846 -18.93517 -18.48664 -17.97961 -17.07369 -16.56018 -16.29676 -16.09464 -15.57158 -15.46456 -15.05572 -14.94706 -14.88283 -14.53029 -14.49773 -14.41738 -14.23601 -14.18218 -14.16681 -13.90159 -13.34739 -13.29822 -13.23220 -13.12776 -12.63870 -12.56319 -12.22705 -12.19775 -11.28066 -10.84464 -10.68477 -10.39865 -10.10797 -10.01971 -9.75305 -9.28818 -8.86646 -8.85019 -8.35989 -6.45328 -3.98446 1.52207 1.73060 2.23546 2.34047 2.93966 2.96441 3.00633 3.09371 3.24593 3.36270 3.49374 3.61639 3.69219 3.72913 3.99324 4.25019 4.46452 4.47874 4.67071 4.80363 4.84932 4.91398 5.09233 5.23500 5.36091 5.57385 5.68345 5.72666 6.19389 6.37720 6.64898 7.30428 7.38951 7.73461 7.94895 8.32460 8.40962 8.76517 9.24202 9.56575 10.66610 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.029781 B = 0.002110 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.958571 B =13264.405929 C =13782.300001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.046 3.954 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.574 5.574 10 C 0.436 3.564 11 O -0.579 6.579 12 C 0.125 3.875 13 N -0.716 5.716 14 C 0.741 3.259 15 O -0.580 6.580 16 N -0.646 5.646 17 C 0.068 3.932 18 C 0.528 3.472 19 O -0.492 6.492 20 N -0.632 5.632 21 C 0.097 3.903 22 C 0.432 3.568 23 F -0.180 7.180 24 F -0.179 7.179 25 F -0.174 7.174 26 C 0.356 3.644 27 H 0.276 0.724 28 H 0.375 0.625 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.410 0.590 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.088 0.912 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.814 -12.686 0.703 26.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.140 0.860 9 N -0.211 5.211 10 C 0.222 3.778 11 O -0.464 6.464 12 C -0.003 4.003 13 N -0.373 5.373 14 C 0.443 3.557 15 O -0.457 6.457 16 N -0.389 5.389 17 C -0.058 4.058 18 C 0.315 3.685 19 O -0.364 6.364 20 N -0.368 5.368 21 C -0.028 4.028 22 C 0.376 3.624 23 F -0.161 7.161 24 F -0.160 7.160 25 F -0.155 7.155 26 C 0.147 3.853 27 H 0.087 0.913 28 H 0.208 0.792 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.249 0.751 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.106 0.894 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 23.560 -13.115 0.684 26.973 hybrid contribution 0.347 0.980 -0.313 1.085 sum 23.907 -12.135 0.371 26.813 Atomic orbital electron populations 1.69614 1.05734 1.27900 1.47860 1.25077 0.95543 0.98221 0.97055 0.86667 0.79907 0.83725 0.79166 1.19362 1.19965 1.19183 1.19436 0.78881 0.96827 1.48802 0.86034 1.42106 1.07729 1.06105 1.65191 1.19582 0.87927 0.84952 0.85340 1.90546 1.69158 1.30867 1.55795 1.20896 0.93708 0.82083 1.03627 1.44724 1.04580 1.09908 1.78088 1.14890 0.82983 0.79883 0.77989 1.90968 1.55204 1.41160 1.58357 1.47033 1.06629 1.04278 1.80919 1.21952 0.94550 0.82723 1.06576 1.20654 0.83141 0.89942 0.74789 1.90842 1.80640 1.16917 1.48020 1.48187 1.06005 1.07591 1.75026 1.22481 0.89110 1.00074 0.91098 1.21251 0.75267 0.74625 0.91296 1.93217 1.94013 1.45258 1.83642 1.93213 1.50768 1.75066 1.96960 1.93259 1.58707 1.80296 1.83278 1.21138 0.83579 0.76763 1.03775 0.91318 0.79191 0.89476 0.89483 0.75141 0.86547 0.86630 0.84858 0.84705 0.89444 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.40 13.96 55.50 0.77 -23.62 16 2 C 0.05 1.19 5.50 -17.47 -0.10 1.09 16 3 Si 0.88 18.41 27.74 -169.99 -4.71 13.69 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.05 6.52 56.52 0.37 -4.69 16 7 C -0.31 -8.31 10.16 -14.94 -0.15 -8.46 16 8 H 0.12 3.71 7.39 -52.49 -0.39 3.32 16 9 N -0.57 -12.73 5.09 -10.96 -0.06 -12.78 16 10 C 0.44 9.01 7.85 -10.98 -0.09 8.93 16 11 O -0.58 -13.88 15.24 5.55 0.08 -13.79 16 12 C 0.12 1.97 6.15 -5.19 -0.03 1.93 16 13 N -0.72 -10.26 5.50 -66.41 -0.37 -10.63 16 14 C 0.74 10.05 8.53 -86.91 -0.74 9.30 16 15 O -0.58 -9.43 16.74 5.29 0.09 -9.34 16 16 N -0.65 -6.58 3.36 -184.00 -0.62 -7.20 16 17 C 0.07 0.60 6.36 -4.90 -0.03 0.57 16 18 C 0.53 5.02 7.86 -11.17 -0.09 4.93 16 19 O -0.49 -6.15 17.67 5.55 0.10 -6.05 16 20 N -0.63 -4.54 2.80 -177.57 -0.50 -5.04 16 21 C 0.10 0.45 5.96 -4.04 -0.02 0.43 16 22 C 0.43 3.08 3.29 37.16 0.12 3.20 16 23 F -0.18 -1.46 16.60 2.25 0.04 -1.42 16 24 F -0.18 -1.26 17.32 2.25 0.04 -1.22 16 25 F -0.17 -1.75 16.98 2.25 0.04 -1.71 16 26 C 0.36 2.74 7.47 -63.72 -0.48 2.27 16 27 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.37 7.28 5.76 -40.82 -0.24 7.05 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.41 5.83 6.52 -40.82 -0.27 5.56 16 32 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.13 0.16 8.14 -51.93 -0.42 -0.27 16 35 H 0.14 0.53 7.97 -51.93 -0.41 0.11 16 36 H 0.09 0.69 7.60 -51.93 -0.39 0.29 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 341.26 15.07 5.14 5.14 Total: -1.00 -34.29 341.26 -4.95 -39.24 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -3.40 Total: 10.52 kcal Atomic # 6 Polarization: 25.81 SS G_CDS: -1.60 Total: 24.20 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.76 Total: -59.27 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: 0.27 Total: -29.18 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.11 Total: -4.36 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -4.71 Total: 13.69 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.29 -4.95 -39.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358308280.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.094 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds