Wall clock time and date at job start Tue Mar 31 2020 20:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99485 * 2 1 4 4 H 1.48494 * 109.47177 * 269.99875 * 3 2 1 5 5 H 1.48505 * 109.47036 * 30.00159 * 3 2 1 6 6 H 1.48499 * 109.46776 * 149.99648 * 3 2 1 7 7 C 1.38941 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00369 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.34779 * 119.99872 * 179.97438 * 13 12 10 15 15 O 1.21590 * 120.00297 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99768 * 180.02562 * 14 13 12 17 17 C 1.46979 * 127.03153 * 0.02665 * 16 14 13 18 18 C 1.50769 * 106.56215 * 180.02562 * 17 16 14 19 19 O 1.21283 * 125.42820 * 179.97438 * 18 17 16 20 20 N 1.34298 * 109.15224 * 359.97438 * 18 17 16 21 21 C 1.46503 * 124.85613 * 180.02562 * 20 18 17 22 22 C 1.52997 * 109.47353 * 90.02377 * 21 20 18 23 23 F 1.39905 * 109.47191 * 59.99992 * 22 21 20 24 24 F 1.39900 * 109.46893 * 179.97438 * 22 21 20 25 25 F 1.39901 * 109.47198 * 299.99991 * 22 21 20 26 26 C 1.46227 * 110.29143 * 359.73119 * 20 18 17 27 27 H 0.96993 * 120.00255 * 0.02562 * 1 2 3 28 28 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 30 30 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 31 31 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 32 32 H 1.08994 * 110.04132 * 299.27537 * 17 16 14 33 33 H 1.08997 * 110.04030 * 60.72550 * 17 16 14 34 34 H 1.09004 * 109.47104 * 210.02721 * 21 20 18 35 35 H 1.08995 * 109.46771 * 330.02230 * 21 20 18 36 36 H 1.09004 * 109.88579 * 240.70987 * 26 20 18 37 37 H 1.08996 * 109.62404 * 120.01459 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4691 -2.1386 0.0005 9 7 3.3799 -1.2031 0.0011 10 6 4.0539 -2.3703 0.0011 11 8 3.4475 -3.4208 0.0011 12 6 5.5609 -2.3701 0.0022 13 7 6.0493 -3.7513 0.0026 14 6 7.3745 -3.9975 0.0031 15 8 8.1645 -3.0733 0.0037 16 7 7.8238 -5.2682 0.0029 17 6 7.0127 -6.4939 0.0017 18 6 7.9806 -7.6498 0.0027 19 8 7.6743 -8.8233 0.0025 20 7 9.2362 -7.1731 0.0038 21 6 10.4457 -7.9998 0.0044 22 6 10.8682 -8.2867 -1.4378 23 9 11.1284 -7.0800 -2.0963 24 9 12.0235 -9.0756 -1.4371 25 9 9.8393 -8.9661 -2.0988 26 6 9.2234 -5.7109 -0.0028 27 1 -0.4850 0.8400 -0.0004 28 1 3.8649 -0.3630 0.0007 29 1 5.9249 -1.8559 -0.8873 30 1 5.9236 -1.8566 0.8927 31 1 5.4191 -4.4887 0.0018 32 1 6.3882 -6.5295 0.8943 33 1 6.3898 -6.5287 -0.8921 34 1 11.2473 -7.4704 0.5194 35 1 10.2429 -8.9399 0.5174 36 1 9.7240 -5.3398 -0.8972 37 1 9.7315 -5.3364 0.8858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358308280.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:59 Heat of formation + Delta-G solvation = -242.296569 kcal Electronic energy + Delta-G solvation = -29044.115142 eV Core-core repulsion = 24020.894322 eV Total energy + Delta-G solvation = -5023.220821 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.14136 -48.66520 -48.65414 -42.27820 -40.89345 -40.01901 -38.01367 -36.28555 -35.79123 -35.26341 -33.80874 -31.30566 -29.66702 -29.29726 -26.78259 -25.56050 -24.54427 -21.78701 -21.56785 -21.40305 -20.60150 -19.80459 -19.60006 -19.46639 -18.81711 -17.87363 -17.62966 -17.10143 -17.09568 -16.96480 -16.66128 -16.50966 -15.76816 -15.67966 -15.55742 -15.50164 -15.27940 -15.07887 -14.89007 -14.84267 -14.79178 -14.62338 -14.31041 -14.22908 -14.11990 -13.81430 -13.63819 -13.54054 -13.22586 -12.94181 -12.41891 -11.98043 -11.80828 -11.55338 -11.34629 -10.76135 -10.63254 -10.35242 -10.27553 -9.71588 -8.43153 -6.05325 0.82031 1.00828 1.33583 1.36811 1.45714 1.47976 1.78895 1.81009 1.92769 2.22996 2.52452 2.73854 2.83794 2.95281 3.03729 3.13446 3.16804 3.71136 3.99376 4.10284 4.13460 4.21032 4.25167 4.29504 4.41630 4.47997 4.56314 4.75620 5.19450 5.49523 5.51893 5.71977 5.90961 6.50868 6.58620 6.67945 6.81232 7.25836 7.34093 7.81126 8.73197 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.029781 B = 0.002110 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.958571 B =13264.405929 C =13782.300001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.959 3.041 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.228 1.228 7 C -0.330 4.330 8 H 0.063 0.937 9 N -0.578 5.578 10 C 0.445 3.555 11 O -0.615 6.615 12 C 0.138 3.862 13 N -0.721 5.721 14 C 0.746 3.254 15 O -0.604 6.604 16 N -0.642 5.642 17 C 0.067 3.933 18 C 0.529 3.471 19 O -0.526 6.526 20 N -0.623 5.623 21 C 0.098 3.902 22 C 0.428 3.572 23 F -0.186 7.186 24 F -0.178 7.178 25 F -0.195 7.195 26 C 0.353 3.647 27 H 0.280 0.720 28 H 0.393 0.607 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.410 0.590 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.177 0.823 35 H 0.145 0.855 36 H 0.090 0.910 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.134 -11.396 1.317 29.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.210 4.210 3 Si 0.779 3.221 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.152 1.152 7 C -0.459 4.459 8 H 0.081 0.919 9 N -0.218 5.218 10 C 0.232 3.768 11 O -0.501 6.501 12 C 0.010 3.990 13 N -0.378 5.378 14 C 0.448 3.552 15 O -0.484 6.484 16 N -0.384 5.384 17 C -0.059 4.059 18 C 0.317 3.683 19 O -0.401 6.401 20 N -0.358 5.358 21 C -0.025 4.025 22 C 0.372 3.628 23 F -0.168 7.168 24 F -0.159 7.159 25 F -0.177 7.177 26 C 0.146 3.854 27 H 0.090 0.910 28 H 0.229 0.771 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.248 0.752 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.194 0.806 35 H 0.163 0.837 36 H 0.108 0.892 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 26.945 -11.858 1.298 29.468 hybrid contribution -0.649 0.391 -0.539 0.930 sum 26.296 -11.467 0.759 28.698 Atomic orbital electron populations 1.69784 1.08113 1.29424 1.49405 1.26089 0.96425 1.02699 0.95779 0.85439 0.79698 0.76921 0.80021 1.18201 1.20125 1.15157 1.19013 0.81035 0.95190 1.50633 0.91890 1.41908 1.06057 1.07507 1.66300 1.20535 0.90137 0.83827 0.82260 1.90539 1.70849 1.32321 1.56377 1.20789 0.89116 0.83418 1.05685 1.44691 1.05138 1.09339 1.78642 1.14767 0.82223 0.80507 0.77707 1.90953 1.55563 1.42253 1.59608 1.46896 1.08037 1.03641 1.79783 1.22020 0.94566 0.82046 1.07244 1.20637 0.83965 0.89385 0.74322 1.90831 1.81264 1.18138 1.49877 1.48205 1.06146 1.07578 1.73864 1.22834 0.89200 1.00906 0.89572 1.21651 0.74827 0.74144 0.92156 1.93203 1.94024 1.45551 1.84014 1.93212 1.50668 1.75078 1.96985 1.93220 1.59728 1.80809 1.83951 1.21374 0.82176 0.76792 1.05067 0.90998 0.77125 0.87359 0.87236 0.75173 0.85582 0.86428 0.80592 0.83691 0.89172 0.87001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.69 13.96 21.66 0.30 -53.39 16 2 C -0.01 -0.54 5.50 84.92 0.47 -0.07 16 3 Si 0.96 36.83 27.74 68.60 1.90 38.73 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.28 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.23 -7.30 6.52 99.48 0.65 -6.65 16 7 C -0.33 -18.15 10.16 84.04 0.85 -17.29 16 8 H 0.06 4.12 7.39 -2.91 -0.02 4.10 16 9 N -0.58 -25.15 5.09 -306.98 -1.56 -26.72 16 10 C 0.44 18.04 7.85 87.66 0.69 18.73 16 11 O -0.61 -29.98 15.24 -3.07 -0.05 -30.02 16 12 C 0.14 3.97 6.15 85.63 0.53 4.50 16 13 N -0.72 -19.26 5.50 -482.28 -2.65 -21.91 16 14 C 0.75 18.44 8.53 179.05 1.53 19.96 16 15 O -0.60 -17.91 16.74 -4.00 -0.07 -17.98 16 16 N -0.64 -11.66 3.36 -854.31 -2.87 -14.53 16 17 C 0.07 1.10 6.36 85.56 0.54 1.64 16 18 C 0.53 9.36 7.86 87.75 0.69 10.05 16 19 O -0.53 -12.86 17.67 -3.04 -0.05 -12.92 16 20 N -0.62 -7.48 2.80 -834.38 -2.34 -9.81 16 21 C 0.10 0.65 5.96 86.38 0.51 1.16 16 22 C 0.43 5.40 3.29 71.98 0.24 5.64 16 23 F -0.19 -2.71 16.60 44.97 0.75 -1.96 16 24 F -0.18 -2.22 17.32 44.97 0.78 -1.44 16 25 F -0.20 -3.82 16.98 44.97 0.76 -3.06 16 26 C 0.35 4.43 7.47 170.95 1.28 5.71 16 27 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 28 H 0.39 14.14 5.76 -92.71 -0.53 13.61 16 29 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.41 11.20 6.52 -92.71 -0.60 10.60 16 32 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.18 -0.35 8.14 -2.38 -0.02 -0.36 16 35 H 0.15 0.76 7.97 -2.39 -0.02 0.75 16 36 H 0.09 1.16 7.60 -2.39 -0.02 1.14 16 37 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -78.43 341.26 2.21 -76.22 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: -0.02 Total: 28.75 kcal Atomic # 6 Polarization: 42.71 SS G_CDS: 7.33 Total: 50.04 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -9.12 Total: -126.35 kcal Atomic # 8 Polarization: -60.75 SS G_CDS: -0.17 Total: -60.92 kcal Atomic # 9 Polarization: -8.76 SS G_CDS: 2.29 Total: -6.47 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 1.90 Total: 38.73 kcal Total: -78.43 2.21 -76.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358308280.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.080 kcal (2) G-P(sol) polarization free energy of solvation -78.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds