Wall clock time and date at job start Tue Mar 31 2020 20:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 117.00009 * 2 1 4 4 O 1.20834 * 119.99971 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00356 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47197 * 180.02562 * 5 3 2 7 7 C 1.33328 * 119.99901 * 269.99792 * 6 5 3 8 8 H 1.07999 * 120.00456 * 13.04940 * 7 6 5 9 9 C 1.46787 * 119.99929 * 193.03912 * 7 6 5 10 10 N 1.29317 * 120.00130 * 15.32938 * 9 7 6 11 11 Si 1.86804 * 120.00142 * 195.32540 * 9 7 6 12 12 H 1.48509 * 109.46926 * 65.00221 * 11 9 7 13 13 H 1.48496 * 109.47493 * 185.00308 * 11 9 7 14 14 H 1.48503 * 109.47105 * 305.00707 * 11 9 7 15 15 C 1.34773 * 120.00265 * 90.00702 * 6 5 3 16 16 O 1.21474 * 119.99952 * 242.11943 * 15 6 5 17 17 C 1.47714 * 120.00230 * 61.83225 * 15 6 5 18 18 C 1.39609 * 120.12202 * 52.37090 * 17 15 6 19 19 C 1.38434 * 119.78216 * 179.74445 * 18 17 15 20 20 O 1.35905 * 119.97742 * 180.23044 * 19 18 17 21 21 C 1.42904 * 116.99845 * 180.29900 * 20 19 18 22 22 C 1.38874 * 120.03752 * 0.53174 * 19 18 17 23 23 C 1.38264 * 120.25512 * 359.72275 * 22 19 18 24 24 C 1.37982 * 120.21666 * 0.02562 * 23 22 19 25 25 N 1.48016 * 120.02081 * 179.97438 * 24 23 22 26 26 O 1.31700 * 120.00061 * 7.38621 * 25 24 23 27 27 O 1.31704 * 119.99756 * 187.39343 * 25 24 23 28 28 H 1.08999 * 109.46942 * 59.99787 * 1 2 3 29 29 H 1.08996 * 109.47162 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46935 * 299.99969 * 1 2 3 31 31 H 1.09006 * 109.46836 * 60.00178 * 5 3 2 32 32 H 1.08999 * 109.47102 * 300.00261 * 5 3 2 33 33 H 0.96996 * 119.99826 * 184.97992 * 10 9 7 34 34 H 1.07993 * 120.11186 * 359.97438 * 18 17 15 35 35 H 1.08994 * 109.47087 * 180.02562 * 21 20 19 36 36 H 1.09000 * 109.47055 * 300.00397 * 21 20 19 37 37 H 1.09002 * 109.47111 * 59.99803 * 21 20 19 38 38 H 1.07995 * 119.87277 * 179.70146 * 22 19 18 39 39 H 1.08007 * 119.89035 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.1711 3.3194 -1.1534 8 1 3.8218 2.8817 -2.0769 9 6 4.8542 4.6185 -1.1692 10 7 5.5283 5.0072 -0.1363 11 14 4.7499 5.7103 -2.6813 12 1 3.3446 6.1475 -2.8802 13 1 5.6168 6.9012 -2.4929 14 1 5.2051 4.9502 -3.8731 15 6 4.1724 3.3258 1.1684 16 8 3.4874 4.2891 1.4485 17 6 5.2100 2.8585 2.1102 18 6 6.5208 2.6665 1.6696 19 6 7.4888 2.2335 2.5594 20 8 8.7670 2.0498 2.1358 21 6 9.7129 1.5953 3.1059 22 6 7.1532 1.9808 3.8831 23 6 5.8544 2.1653 4.3199 24 6 4.8823 2.6016 3.4432 25 7 3.4931 2.7971 3.9153 26 8 3.2133 2.6965 5.1983 27 8 2.5368 3.0716 3.0523 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9564 0.7807 -0.8892 32 1 3.9557 0.7810 0.8908 33 1 5.9192 5.8948 -0.1182 34 1 6.7795 2.8587 0.6389 35 1 10.6916 1.4908 2.6378 36 1 9.7749 2.3181 3.9194 37 1 9.3936 0.6307 3.5005 38 1 7.9094 1.6385 4.5738 39 1 5.5999 1.9674 5.3507 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358585661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:55 Heat of formation + Delta-G solvation = -54.457897 kcal Electronic energy + Delta-G solvation = -30842.455490 eV Core-core repulsion = 26336.943955 eV Total energy + Delta-G solvation = -4505.511535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -40.47004 -39.82505 -38.88005 -37.92458 -36.58371 -35.80375 -34.55052 -33.42436 -32.41987 -31.22195 -30.60033 -28.67718 -27.76572 -26.48328 -25.58022 -24.80657 -23.02271 -21.73442 -20.85987 -19.93859 -18.48981 -17.70822 -17.34561 -17.06767 -16.89547 -16.26120 -15.93158 -15.87700 -15.85808 -15.36496 -15.09160 -14.83249 -14.38184 -14.08927 -13.92954 -13.47266 -13.17369 -13.03424 -12.94865 -12.67866 -12.34711 -11.93860 -11.81476 -11.64031 -11.51183 -11.17702 -11.13948 -11.04949 -10.94113 -10.41655 -10.41272 -10.28039 -10.04854 -9.96445 -9.72154 -9.40372 -8.94788 -8.63838 -8.44686 -8.08048 -6.71336 -3.58902 -0.08945 1.17518 1.69975 1.99498 2.93215 3.03444 3.06932 3.13208 3.17958 3.22096 3.48287 3.95411 4.02470 4.45162 4.64270 4.77541 4.85815 4.96019 4.99309 5.11538 5.26905 5.30838 5.36915 5.44584 5.50043 5.57128 5.70626 5.82086 5.83170 5.94712 5.95535 6.12597 6.27739 6.66424 6.72627 6.92854 7.05535 7.28184 7.43890 7.67072 8.39993 8.45189 8.99125 9.13339 9.66572 10.36700 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.008321 B = 0.006237 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.152902 B = 4488.444080 C = 6220.290337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.373 6.373 3 C 0.422 3.578 4 O -0.467 6.467 5 C 0.138 3.862 6 N -0.481 5.481 7 C -0.288 4.288 8 H 0.100 0.900 9 C 0.029 3.971 10 N -0.821 5.821 11 Si 0.929 3.071 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.270 1.270 15 C 0.577 3.423 16 O -0.456 6.456 17 C -0.005 4.005 18 C -0.087 4.087 19 C 0.158 3.842 20 O -0.304 6.304 21 C 0.024 3.976 22 C -0.217 4.217 23 C -0.023 4.023 24 C -0.031 4.031 25 N -0.011 5.011 26 O -0.257 6.257 27 O -0.144 6.144 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.287 0.713 34 H 0.166 0.834 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.143 0.857 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.901 -10.909 2.316 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.291 6.291 3 C 0.260 3.740 4 O -0.349 6.349 5 C 0.010 3.990 6 N -0.205 5.205 7 C -0.416 4.416 8 H 0.117 0.883 9 C -0.184 4.184 10 N -0.457 5.457 11 Si 0.755 3.245 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.195 1.195 15 C 0.366 3.634 16 O -0.326 6.326 17 C -0.013 4.013 18 C -0.107 4.107 19 C 0.110 3.890 20 O -0.216 6.216 21 C -0.072 4.072 22 C -0.237 4.237 23 C -0.043 4.043 24 C -0.121 4.121 25 N 0.448 4.552 26 O -0.425 6.425 27 O -0.338 6.338 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.131 0.869 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.184 0.816 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.160 0.840 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.047 -9.942 2.349 13.004 hybrid contribution -0.534 0.797 -0.059 0.961 sum 7.513 -9.145 2.289 12.055 Atomic orbital electron populations 1.23111 0.77669 1.02614 1.02354 1.86494 1.22563 1.34755 1.85256 1.25323 0.93579 0.81362 0.73704 1.90735 1.66327 1.35902 1.41942 1.20527 0.87011 0.86649 1.04786 1.41430 1.66806 1.07118 1.05130 1.20477 1.31606 1.04264 0.85294 0.88271 1.26592 0.94564 0.98468 0.98727 1.68404 1.26516 1.19357 1.31450 0.85934 0.78951 0.79129 0.80496 1.19644 1.20735 1.19496 1.16645 0.82940 0.84368 0.79495 1.90630 1.42195 1.28229 1.71543 1.20314 0.96923 0.92233 0.91820 1.20654 0.88599 0.99946 1.01519 1.19250 0.84404 0.93049 0.92260 1.86158 1.16054 1.81051 1.38382 1.23136 0.91936 0.99171 0.92911 1.21095 0.96789 1.10312 0.95541 1.20584 0.90805 0.93250 0.99660 1.20237 0.80713 1.15910 0.95265 1.50172 1.04001 0.98553 1.02448 1.96145 1.90565 1.61389 0.94361 1.96410 1.38831 1.50554 1.47984 0.92385 0.88917 0.92187 0.86906 0.89020 0.89956 0.81619 0.88016 0.92412 0.92351 0.83953 0.83370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 57. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.58 16 2 O -0.37 -6.40 10.57 -39.26 -0.41 -6.81 16 3 C 0.42 8.69 8.02 36.00 0.29 8.98 16 4 O -0.47 -11.64 16.18 -18.76 -0.30 -11.94 16 5 C 0.14 2.64 6.12 -5.20 -0.03 2.61 16 6 N -0.48 -11.39 1.91 -115.66 -0.22 -11.61 16 7 C -0.29 -7.06 9.83 -13.45 -0.13 -7.19 16 8 H 0.10 2.27 7.98 -52.49 -0.42 1.85 16 9 C 0.03 0.72 5.26 -15.16 -0.08 0.64 16 10 N -0.82 -20.82 9.87 56.00 0.55 -20.27 16 11 Si 0.93 19.65 29.67 -169.99 -5.04 14.61 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 14 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 15 C 0.58 14.69 2.27 -12.39 -0.03 14.67 16 16 O -0.46 -13.70 14.25 -19.20 -0.27 -13.98 16 17 C 0.00 -0.11 5.14 -104.99 -0.54 -0.65 16 18 C -0.09 -1.65 9.24 -39.00 -0.36 -2.01 16 19 C 0.16 2.41 6.68 -39.27 -0.26 2.14 16 20 O -0.30 -4.03 10.49 -19.44 -0.20 -4.24 16 21 C 0.02 0.19 9.81 101.05 0.99 1.18 16 22 C -0.22 -2.90 9.03 -39.34 -0.36 -3.25 16 23 C -0.02 -0.38 9.56 -39.67 -0.38 -0.75 16 24 C -0.03 -0.64 6.87 -79.51 -0.55 -1.19 16 25 N -0.01 -0.28 4.98 34.17 0.17 -0.11 16 26 O -0.26 -5.99 19.17 -31.57 -0.61 -6.59 16 27 O -0.14 -3.92 15.42 -40.02 -0.62 -4.54 16 28 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 31 H 0.11 1.75 8.03 -51.93 -0.42 1.34 16 32 H 0.09 1.58 7.62 -51.93 -0.40 1.18 16 33 H 0.29 7.04 8.27 -40.82 -0.34 6.70 16 34 H 0.17 3.36 7.54 -52.49 -0.40 2.96 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 37 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 38 H 0.14 1.32 6.28 -52.49 -0.33 0.99 16 39 H 0.15 2.08 7.59 -52.48 -0.40 1.68 16 LS Contribution 353.40 15.07 5.33 5.33 Total: -1.00 -35.32 353.40 -5.98 -41.30 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -3.97 Total: 2.11 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: -0.37 Total: 16.75 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.50 Total: -31.99 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -2.42 Total: -48.11 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.04 Total: 14.61 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.32 -5.98 -41.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358585661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.162 kcal (2) G-P(sol) polarization free energy of solvation -35.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds