Wall clock time and date at job start Tue Mar 31 2020 20:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 117.00009 * 2 1 4 4 O 1.20834 * 119.99971 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00356 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47197 * 180.02562 * 5 3 2 7 7 C 1.33328 * 119.99901 * 269.99792 * 6 5 3 8 8 H 1.07999 * 120.00456 * 13.04940 * 7 6 5 9 9 C 1.46787 * 119.99929 * 193.03912 * 7 6 5 10 10 N 1.29317 * 120.00130 * 15.32938 * 9 7 6 11 11 Si 1.86804 * 120.00142 * 195.32540 * 9 7 6 12 12 H 1.48509 * 109.46926 * 65.00221 * 11 9 7 13 13 H 1.48496 * 109.47493 * 185.00308 * 11 9 7 14 14 H 1.48503 * 109.47105 * 305.00707 * 11 9 7 15 15 C 1.34773 * 120.00265 * 90.00702 * 6 5 3 16 16 O 1.21474 * 119.99952 * 242.11943 * 15 6 5 17 17 C 1.47714 * 120.00230 * 61.83225 * 15 6 5 18 18 C 1.39609 * 120.12202 * 52.37090 * 17 15 6 19 19 C 1.38434 * 119.78216 * 179.74445 * 18 17 15 20 20 O 1.35905 * 119.97742 * 180.23044 * 19 18 17 21 21 C 1.42904 * 116.99845 * 180.29900 * 20 19 18 22 22 C 1.38874 * 120.03752 * 0.53174 * 19 18 17 23 23 C 1.38264 * 120.25512 * 359.72275 * 22 19 18 24 24 C 1.37982 * 120.21666 * 0.02562 * 23 22 19 25 25 N 1.48016 * 120.02081 * 179.97438 * 24 23 22 26 26 O 1.31700 * 120.00061 * 7.38621 * 25 24 23 27 27 O 1.31704 * 119.99756 * 187.39343 * 25 24 23 28 28 H 1.08999 * 109.46942 * 59.99787 * 1 2 3 29 29 H 1.08996 * 109.47162 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46935 * 299.99969 * 1 2 3 31 31 H 1.09006 * 109.46836 * 60.00178 * 5 3 2 32 32 H 1.08999 * 109.47102 * 300.00261 * 5 3 2 33 33 H 0.96996 * 119.99826 * 184.97992 * 10 9 7 34 34 H 1.07993 * 120.11186 * 359.97438 * 18 17 15 35 35 H 1.08994 * 109.47087 * 180.02562 * 21 20 19 36 36 H 1.09000 * 109.47055 * 300.00397 * 21 20 19 37 37 H 1.09002 * 109.47111 * 59.99803 * 21 20 19 38 38 H 1.07995 * 119.87277 * 179.70146 * 22 19 18 39 39 H 1.08007 * 119.89035 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.1711 3.3194 -1.1534 8 1 3.8218 2.8817 -2.0769 9 6 4.8542 4.6185 -1.1692 10 7 5.5283 5.0072 -0.1363 11 14 4.7499 5.7103 -2.6813 12 1 3.3446 6.1475 -2.8802 13 1 5.6168 6.9012 -2.4929 14 1 5.2051 4.9502 -3.8731 15 6 4.1724 3.3258 1.1684 16 8 3.4874 4.2891 1.4485 17 6 5.2100 2.8585 2.1102 18 6 6.5208 2.6665 1.6696 19 6 7.4888 2.2335 2.5594 20 8 8.7670 2.0498 2.1358 21 6 9.7129 1.5953 3.1059 22 6 7.1532 1.9808 3.8831 23 6 5.8544 2.1653 4.3199 24 6 4.8823 2.6016 3.4432 25 7 3.4931 2.7971 3.9153 26 8 3.2133 2.6965 5.1983 27 8 2.5368 3.0716 3.0523 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9564 0.7807 -0.8892 32 1 3.9557 0.7810 0.8908 33 1 5.9192 5.8948 -0.1182 34 1 6.7795 2.8587 0.6389 35 1 10.6916 1.4908 2.6378 36 1 9.7749 2.3181 3.9194 37 1 9.3936 0.6307 3.5005 38 1 7.9094 1.6385 4.5738 39 1 5.5999 1.9674 5.3507 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358585661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:53 Heat of formation + Delta-G solvation = -78.331524 kcal Electronic energy + Delta-G solvation = -30843.490728 eV Core-core repulsion = 26336.943955 eV Total energy + Delta-G solvation = -4506.546774 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.97298 -41.34196 -40.38328 -39.72680 -38.08452 -37.41152 -36.34327 -35.34690 -34.09421 -32.68554 -32.10802 -30.15619 -28.81541 -27.83079 -27.06332 -26.46935 -24.52656 -23.30756 -22.39023 -21.51040 -20.01027 -19.37627 -18.98708 -18.66021 -18.48996 -17.77169 -17.39455 -17.31290 -17.05507 -16.88812 -16.69412 -16.45743 -16.04357 -15.68534 -15.39560 -14.90297 -14.48846 -14.42011 -14.35267 -14.06216 -13.61712 -13.46889 -13.27664 -13.09201 -12.94625 -12.87212 -12.66636 -12.42561 -12.23290 -12.17889 -12.06605 -11.88312 -11.74390 -11.72849 -11.62115 -11.09964 -10.63019 -10.34335 -9.80465 -9.77579 -8.42862 -5.48308 -1.78912 -0.22269 0.10512 0.24361 1.33051 1.36221 1.45431 1.47517 1.57461 1.88588 2.07885 2.32342 2.40996 2.83779 3.06461 3.34224 3.54657 3.57568 3.84952 3.95265 4.09542 4.22058 4.31557 4.35492 4.36417 4.40715 4.44431 4.48360 4.59110 4.67865 4.68196 4.85590 4.86489 5.02021 5.24686 5.32654 5.42322 5.68671 5.78116 6.13733 6.69148 6.89366 7.31985 7.41607 7.96083 8.67324 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.008321 B = 0.006237 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.152902 B = 4488.444080 C = 6220.290337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.425 3.575 4 O -0.522 6.522 5 C 0.138 3.862 6 N -0.507 5.507 7 C -0.342 4.342 8 H 0.096 0.904 9 C -0.011 4.011 10 N -0.865 5.865 11 Si 0.978 3.022 12 H -0.296 1.296 13 H -0.281 1.281 14 H -0.249 1.249 15 C 0.592 3.408 16 O -0.519 6.519 17 C -0.017 4.017 18 C -0.100 4.100 19 C 0.197 3.803 20 O -0.312 6.312 21 C 0.004 3.996 22 C -0.183 4.183 23 C -0.001 4.001 24 C -0.059 4.059 25 N -0.007 5.007 26 O -0.180 6.180 27 O -0.242 6.242 28 H 0.055 0.945 29 H 0.142 0.858 30 H 0.045 0.955 31 H 0.145 0.855 32 H 0.108 0.892 33 H 0.276 0.724 34 H 0.146 0.854 35 H 0.124 0.876 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.207 0.793 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.781 -14.309 6.322 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C 0.265 3.735 4 O -0.408 6.408 5 C 0.011 3.989 6 N -0.232 5.232 7 C -0.470 4.470 8 H 0.113 0.887 9 C -0.218 4.218 10 N -0.503 5.503 11 Si 0.803 3.197 12 H -0.223 1.223 13 H -0.207 1.207 14 H -0.173 1.173 15 C 0.383 3.617 16 O -0.393 6.393 17 C -0.024 4.024 18 C -0.120 4.120 19 C 0.148 3.852 20 O -0.224 6.224 21 C -0.089 4.089 22 C -0.202 4.202 23 C -0.021 4.021 24 C -0.149 4.149 25 N 0.458 4.542 26 O -0.376 6.376 27 O -0.415 6.415 28 H 0.074 0.926 29 H 0.160 0.840 30 H 0.064 0.936 31 H 0.162 0.838 32 H 0.126 0.874 33 H 0.088 0.912 34 H 0.163 0.837 35 H 0.142 0.858 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.224 0.776 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 11.951 -13.359 6.030 18.912 hybrid contribution -1.400 1.466 -0.472 2.081 sum 10.551 -11.893 5.558 16.842 Atomic orbital electron populations 1.23452 0.75791 1.05499 1.01629 1.86477 1.24356 1.32764 1.84440 1.25730 0.94331 0.81349 0.72081 1.90713 1.67533 1.37872 1.44714 1.20760 0.85989 0.85247 1.06861 1.41321 1.68970 1.08636 1.04264 1.20349 1.35052 1.05827 0.85739 0.88652 1.27205 0.94582 0.99431 1.00573 1.68468 1.29699 1.19110 1.33028 0.85211 0.77135 0.78024 0.79323 1.22307 1.20675 1.17253 1.17235 0.81764 0.82854 0.79886 1.90563 1.44152 1.31168 1.73421 1.20221 0.96958 0.93441 0.91733 1.20485 0.88586 1.01175 1.01802 1.19261 0.84798 0.88992 0.92187 1.86211 1.15307 1.79949 1.40920 1.23723 0.91437 1.00942 0.92840 1.21727 0.96709 1.06748 0.95011 1.21152 0.90190 0.90473 1.00260 1.20706 0.79875 1.18576 0.95749 1.50714 1.05413 0.95927 1.02161 1.96081 1.90860 1.56053 0.94626 1.96510 1.40205 1.56854 1.47947 0.92594 0.84050 0.93615 0.83751 0.87436 0.91205 0.83653 0.85759 0.90295 0.89479 0.77578 0.79624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 10.56 113.37 1.20 2.05 16 2 O -0.36 -12.77 10.57 -51.43 -0.54 -13.31 16 3 C 0.42 18.65 8.02 71.24 0.57 19.22 16 4 O -0.52 -28.47 16.18 21.94 0.35 -28.12 16 5 C 0.14 5.61 6.12 85.63 0.52 6.13 16 6 N -0.51 -26.00 1.91 -638.15 -1.22 -27.22 16 7 C -0.34 -18.41 9.83 86.70 0.85 -17.56 16 8 H 0.10 4.88 7.98 -2.91 -0.02 4.85 16 9 C -0.01 -0.57 5.26 87.30 0.46 -0.12 16 10 N -0.87 -47.91 9.87 23.26 0.23 -47.68 16 11 Si 0.98 44.13 29.67 68.60 2.04 46.17 16 12 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 13 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 14 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 15 C 0.59 32.30 2.27 86.75 0.20 32.50 16 16 O -0.52 -34.05 14.25 19.88 0.28 -33.76 16 17 C -0.02 -0.76 5.14 -20.10 -0.10 -0.86 16 18 C -0.10 -3.72 9.24 22.65 0.21 -3.51 16 19 C 0.20 5.03 6.68 22.47 0.15 5.18 16 20 O -0.31 -6.56 10.49 -92.48 -0.97 -7.53 16 21 C 0.00 0.03 9.81 113.37 1.11 1.14 16 22 C -0.18 -3.44 9.03 22.43 0.20 -3.24 16 23 C 0.00 -0.04 9.56 22.22 0.21 0.17 16 24 C -0.06 -2.36 6.87 36.66 0.25 -2.10 16 25 N -0.01 -0.34 4.98 -45.79 -0.23 -0.57 16 26 O -0.18 -7.68 19.17 3.51 0.07 -7.61 16 27 O -0.24 -13.92 15.42 11.59 0.18 -13.74 16 28 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 29 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.04 1.43 8.13 -2.38 -0.02 1.41 16 31 H 0.14 4.72 8.03 -2.38 -0.02 4.70 16 32 H 0.11 3.83 7.62 -2.39 -0.02 3.81 16 33 H 0.28 14.85 8.27 -92.71 -0.77 14.08 16 34 H 0.15 6.13 7.54 -2.91 -0.02 6.11 16 35 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 0.44 7.66 -2.39 -0.02 0.42 16 37 H 0.09 0.34 7.66 -2.39 -0.02 0.33 16 38 H 0.21 1.49 6.28 -2.91 -0.02 1.48 16 39 H 0.19 3.56 7.59 -2.91 -0.02 3.54 16 Total: -1.00 -90.64 353.40 7.14 -83.50 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.12 Total: 10.87 kcal Atomic # 6 Polarization: 33.17 SS G_CDS: 5.84 Total: 39.00 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -1.22 Total: -75.46 kcal Atomic # 8 Polarization: -103.45 SS G_CDS: -0.63 Total: -104.08 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.04 Total: 46.17 kcal Total: -90.64 7.14 -83.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358585661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.166 kcal (2) G-P(sol) polarization free energy of solvation -90.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds