Wall clock time and date at job start Tue Mar 31 2020 20:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34221 * 116.99809 * 2 1 4 4 O 1.20826 * 120.00268 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99903 * 179.97438 * 3 2 1 6 6 N 1.46492 * 109.47223 * 179.97438 * 5 3 2 7 7 C 1.33316 * 119.99980 * 262.49743 * 6 5 3 8 8 H 1.08000 * 119.99955 * 143.48587 * 7 6 5 9 9 C 1.46790 * 120.00134 * 323.49277 * 7 6 5 10 10 N 1.29312 * 119.99781 * 339.24285 * 9 7 6 11 11 Si 1.86792 * 119.99996 * 159.23902 * 9 7 6 12 12 H 1.48501 * 109.47578 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47125 * 120.00038 * 11 9 7 14 14 H 1.48493 * 109.47584 * 239.99873 * 11 9 7 15 15 C 1.34776 * 120.00162 * 82.50134 * 6 5 3 16 16 O 1.21509 * 119.99892 * 7.40441 * 15 6 5 17 17 C 1.47371 * 119.99702 * 187.40315 * 15 6 5 18 18 C 1.39800 * 120.20703 * 322.97512 * 17 15 6 19 19 C 1.37742 * 119.90368 * 179.97438 * 18 17 15 20 20 C 1.38590 * 120.31473 * 0.02562 * 19 18 17 21 21 N 1.48007 * 119.79353 * 180.02562 * 20 19 18 22 22 O 1.31695 * 120.00686 * 359.97438 * 21 20 19 23 23 O 1.31703 * 119.99936 * 180.02562 * 21 20 19 24 24 C 1.38056 * 120.40670 * 359.73862 * 20 19 18 25 25 C 1.38707 * 120.09217 * 0.51263 * 24 20 19 26 26 O 1.35630 * 120.15581 * 179.76361 * 25 24 20 27 27 C 1.42904 * 117.00152 * 359.72971 * 26 25 24 28 28 H 1.09001 * 109.47009 * 300.00415 * 1 2 3 29 29 H 1.08992 * 109.46620 * 60.00199 * 1 2 3 30 30 H 1.09001 * 109.46856 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46980 * 59.99532 * 5 3 2 32 32 H 1.08998 * 109.46906 * 300.00059 * 5 3 2 33 33 H 0.97001 * 120.00077 * 180.02562 * 10 9 7 34 34 H 1.08008 * 120.05015 * 0.02562 * 18 17 15 35 35 H 1.08001 * 119.84348 * 180.02562 * 19 18 17 36 36 H 1.08002 * 119.95058 * 180.26137 * 24 20 19 37 37 H 1.08994 * 109.47167 * 179.97438 * 27 26 25 38 38 H 1.08995 * 109.47004 * 59.99485 * 27 26 25 39 39 H 1.09003 * 109.47020 * 299.99755 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9817 2.6796 -0.0002 7 6 4.3158 3.2754 -1.1451 8 1 4.0594 4.3115 -1.3095 9 6 5.0320 2.5230 -2.1823 10 7 5.6859 1.4523 -1.8690 11 14 4.9987 3.1122 -3.9545 12 1 4.1872 4.3523 -4.0488 13 1 6.3844 3.3923 -4.4091 14 1 4.3986 2.0610 -4.8146 15 6 4.0263 3.3698 1.1566 16 8 3.8535 2.7959 2.2136 17 6 4.2845 4.8206 1.1395 18 6 5.1833 5.3642 0.2170 19 6 5.4196 6.7212 0.2061 20 6 4.7707 7.5515 1.1063 21 7 5.0328 9.0080 1.0840 22 8 5.8807 9.5113 0.2111 23 8 4.4187 9.8007 1.9380 24 6 3.8769 7.0291 2.0196 25 6 3.6302 5.6644 2.0489 26 8 2.7560 5.1492 2.9488 27 6 2.1273 6.0698 3.8430 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.9564 0.7805 -0.8891 32 1 3.9557 0.7809 0.8908 33 1 6.1595 0.9553 -2.5543 34 1 5.6911 4.7212 -0.4868 35 1 6.1138 7.1402 -0.5073 36 1 3.3721 7.6834 2.7149 37 1 1.4541 5.5285 4.5076 38 1 1.5598 6.8029 3.2698 39 1 2.8884 6.5802 4.4332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427592484.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:01 Heat of formation + Delta-G solvation = -90.631154 kcal Electronic energy + Delta-G solvation = -29968.067003 eV Core-core repulsion = 25460.986877 eV Total energy + Delta-G solvation = -4507.080125 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.13896 -41.47589 -40.31192 -39.94881 -38.30238 -37.50332 -36.78621 -35.64527 -34.05893 -33.27300 -31.64476 -30.47688 -28.77930 -28.26744 -27.53645 -26.42715 -23.99488 -23.63616 -22.44129 -21.39310 -20.39177 -19.64504 -19.38110 -18.77835 -18.33265 -17.82096 -17.44075 -17.32575 -17.26254 -17.14473 -16.79694 -16.58802 -16.36230 -15.55895 -15.42538 -15.10758 -14.72947 -14.43590 -14.35248 -14.10546 -13.77947 -13.53266 -13.34228 -12.96850 -12.92564 -12.83082 -12.72703 -12.61967 -12.53881 -12.32869 -12.28228 -12.06559 -11.94191 -11.80847 -11.60545 -11.22754 -10.73034 -10.48504 -9.89137 -9.66305 -8.58576 -5.99998 -1.97523 -0.18947 -0.07555 -0.02708 1.21119 1.36982 1.45929 1.51902 1.60337 1.87645 2.08254 2.25808 2.38071 2.65113 2.92890 3.30391 3.43402 3.58406 3.82387 3.84462 4.01722 4.17724 4.25590 4.26936 4.29549 4.30031 4.40339 4.46446 4.62231 4.63231 4.65104 4.71915 4.83357 4.95023 5.16296 5.31259 5.34610 5.56807 5.61685 6.11182 6.23550 6.73909 6.80187 7.34872 7.86522 8.40722 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010443 B = 0.004781 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.511970 B = 5854.521510 C = 7817.642377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.449 3.551 4 O -0.532 6.532 5 C 0.117 3.883 6 N -0.391 5.391 7 C -0.414 4.414 8 H 0.105 0.895 9 C 0.035 3.965 10 N -0.831 5.831 11 Si 0.973 3.027 12 H -0.262 1.262 13 H -0.262 1.262 14 H -0.274 1.274 15 C 0.491 3.509 16 O -0.612 6.612 17 C -0.088 4.088 18 C -0.035 4.035 19 C -0.087 4.087 20 C 0.027 3.973 21 N -0.011 5.011 22 O -0.180 6.180 23 O -0.191 6.191 24 C -0.151 4.151 25 C 0.158 3.842 26 O -0.309 6.309 27 C 0.007 3.993 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.100 0.900 33 H 0.295 0.705 34 H 0.188 0.812 35 H 0.180 0.820 36 H 0.179 0.821 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.866 1.603 1.146 4.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.292 3.708 4 O -0.421 6.421 5 C -0.008 4.008 6 N -0.105 5.105 7 C -0.541 4.541 8 H 0.122 0.878 9 C -0.181 4.181 10 N -0.461 5.461 11 Si 0.795 3.205 12 H -0.186 1.186 13 H -0.187 1.187 14 H -0.199 1.199 15 C 0.283 3.717 16 O -0.500 6.500 17 C -0.092 4.092 18 C -0.054 4.054 19 C -0.107 4.107 20 C -0.059 4.059 21 N 0.465 4.535 22 O -0.373 6.373 23 O -0.382 6.382 24 C -0.171 4.171 25 C 0.109 3.891 26 O -0.221 6.221 27 C -0.086 4.086 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.205 0.795 35 H 0.197 0.803 36 H 0.197 0.803 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.256 0.575 1.638 4.596 hybrid contribution -0.373 0.724 -0.586 1.003 sum -4.629 1.299 1.052 4.921 Atomic orbital electron populations 1.23526 0.75151 1.05717 1.02072 1.86508 1.24935 1.32657 1.84097 1.24999 0.93325 0.81421 0.71041 1.90575 1.67573 1.37493 1.46481 1.21094 0.85277 0.87494 1.06963 1.41914 1.53302 1.08929 1.06365 1.20671 1.39465 0.99503 0.94510 0.87811 1.27614 0.91848 0.95165 1.03442 1.68889 1.22917 1.16633 1.37701 0.85187 0.79234 0.79367 0.76744 1.18593 1.18688 1.19901 1.18165 0.82544 0.87255 0.83702 1.90604 1.57207 1.70712 1.31497 1.19969 0.98791 0.94041 0.96426 1.22101 0.93892 0.93764 0.95651 1.21237 0.99343 0.92310 0.97797 1.20260 1.05451 0.76428 1.03807 1.50571 0.98653 1.04823 0.99427 1.96250 1.29067 1.80605 1.31372 1.96232 1.50273 1.57857 1.33850 1.20919 1.00634 0.94047 1.01546 1.18779 0.90471 0.89782 0.90045 1.86339 1.53848 1.37437 1.44461 1.23573 0.98234 0.94313 0.92519 0.92697 0.92227 0.84327 0.84022 0.88188 0.89246 0.79476 0.80252 0.80334 0.86106 0.90918 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.95 16 2 O -0.37 -13.11 10.57 -51.33 -0.54 -13.65 16 3 C 0.45 19.49 7.97 71.24 0.57 20.05 16 4 O -0.53 -25.83 15.99 21.96 0.35 -25.48 16 5 C 0.12 5.20 5.51 85.64 0.47 5.68 16 6 N -0.39 -18.41 2.05 -638.53 -1.31 -19.72 16 7 C -0.41 -18.46 6.76 86.71 0.59 -17.88 16 8 H 0.10 4.54 5.91 -2.91 -0.02 4.53 16 9 C 0.03 1.44 5.05 87.30 0.44 1.89 16 10 N -0.83 -35.49 11.53 23.26 0.27 -35.22 16 11 Si 0.97 33.05 29.68 68.60 2.04 35.09 16 12 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 13 H -0.26 -8.47 7.11 99.48 0.71 -7.76 16 14 H -0.27 -9.31 7.11 99.48 0.71 -8.61 16 15 C 0.49 23.73 6.88 86.65 0.60 24.32 16 16 O -0.61 -32.60 15.68 12.60 0.20 -32.40 16 17 C -0.09 -3.60 5.44 -20.01 -0.11 -3.71 16 18 C -0.03 -1.22 7.64 22.53 0.17 -1.05 16 19 C -0.09 -2.61 9.55 22.24 0.21 -2.40 16 20 C 0.03 0.85 6.89 36.42 0.25 1.10 16 21 N -0.01 -0.35 4.98 -46.37 -0.23 -0.58 16 22 O -0.18 -5.96 19.13 3.52 0.07 -5.89 16 23 O -0.19 -6.30 19.13 3.51 0.07 -6.24 16 24 C -0.15 -4.61 8.55 22.34 0.19 -4.42 16 25 C 0.16 5.80 6.67 22.87 0.15 5.95 16 26 O -0.31 -11.42 9.19 -73.09 -0.67 -12.09 16 27 C 0.01 0.17 9.81 113.37 1.11 1.28 16 28 H 0.05 1.49 8.13 -2.39 -0.02 1.47 16 29 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 30 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.14 6.23 5.50 -2.39 -0.01 6.21 16 32 H 0.10 4.47 7.56 -2.39 -0.02 4.45 16 33 H 0.30 11.43 8.26 -92.71 -0.77 10.66 16 34 H 0.19 6.65 5.73 -2.91 -0.02 6.64 16 35 H 0.18 4.43 7.56 -2.91 -0.02 4.41 16 36 H 0.18 4.49 5.80 -2.91 -0.02 4.47 16 37 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.07 1.44 7.65 -2.39 -0.02 1.43 16 39 H 0.08 1.48 7.67 -2.39 -0.02 1.46 16 Total: -1.00 -63.35 350.72 7.21 -56.13 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 1.14 Total: 27.28 kcal Atomic # 6 Polarization: 26.93 SS G_CDS: 5.84 Total: 32.77 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -1.27 Total: -55.52 kcal Atomic # 8 Polarization: -95.22 SS G_CDS: -0.53 Total: -95.75 kcal Atomic # 14 Polarization: 33.05 SS G_CDS: 2.04 Total: 35.09 kcal Total: -63.35 7.21 -56.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427592484.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.500 kcal (2) G-P(sol) polarization free energy of solvation -63.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds