Wall clock time and date at job start Tue Mar 31 2020 20:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00305 * 2 1 4 4 H 1.48497 * 109.47002 * 270.00410 * 3 2 1 5 5 H 1.48498 * 109.47128 * 30.00093 * 3 2 1 6 6 H 1.48497 * 109.47401 * 150.00237 * 3 2 1 7 7 C 1.37879 * 119.99414 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99467 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00235 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47145 * 180.02562 * 9 7 2 11 11 C 1.34783 * 120.00272 * 179.97438 * 10 9 7 12 12 O 1.21357 * 119.99473 * 0.02562 * 11 10 9 13 13 C 1.49327 * 120.00090 * 179.97438 * 11 10 9 14 14 O 1.21387 * 119.99944 * 0.02562 * 13 11 10 15 15 N 1.34775 * 119.99873 * 180.02562 * 13 11 10 16 16 C 1.39773 * 119.99867 * 185.28185 * 15 13 11 17 17 C 1.39436 * 119.85615 * 213.54720 * 16 15 13 18 18 C 1.36478 * 120.59134 * 180.02562 * 17 16 15 19 19 C 1.39807 * 119.98795 * 359.97438 * 18 17 16 20 20 N 1.35828 * 133.47967 * 179.66386 * 19 18 17 21 21 C 1.30090 * 109.65611 * 179.88810 * 20 19 18 22 22 C 1.50704 * 124.95078 * 180.13115 * 21 20 19 23 23 F 1.39900 * 109.47192 * 120.32597 * 22 21 20 24 24 F 1.39893 * 109.46987 * 240.32739 * 22 21 20 25 25 N 1.36113 * 110.09699 * 0.41459 * 21 20 19 26 26 H 0.97007 * 126.35308 * 179.72988 * 25 21 20 27 27 C 1.38079 * 107.29556 * 359.74942 * 25 21 20 28 28 C 1.38537 * 119.86137 * 33.52428 * 16 15 13 29 29 H 0.97002 * 119.99246 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47075 * 60.00141 * 9 7 2 31 31 H 1.09002 * 109.46931 * 299.99891 * 9 7 2 32 32 H 0.97003 * 119.99980 * 359.97438 * 10 9 7 33 33 H 0.96999 * 120.00041 * 5.28093 * 15 13 11 34 34 H 1.07997 * 119.70287 * 0.02562 * 17 16 15 35 35 H 1.08003 * 119.99874 * 179.97438 * 18 17 16 36 36 H 1.09005 * 109.46997 * 0.32765 * 22 21 20 37 37 H 1.07998 * 120.18076 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 1.7535 -4.8834 0.0000 12 8 0.5604 -5.1051 0.0000 13 6 2.7239 -6.0185 -0.0006 14 8 3.9173 -5.7967 -0.0011 15 7 2.2745 -7.2891 -0.0006 16 6 3.1780 -8.3498 0.1103 17 6 2.9203 -9.5527 -0.5463 18 6 3.7919 -10.5982 -0.4479 19 6 4.9556 -10.4684 0.3160 20 7 5.9840 -11.3082 0.6027 21 6 6.8422 -10.7029 1.3705 22 6 8.1152 -11.3165 1.8941 23 9 9.2103 -10.5647 1.4550 24 9 8.0871 -11.3265 3.2927 25 7 6.4197 -9.4368 1.6370 26 1 6.8769 -8.7819 2.1876 27 6 5.2193 -9.2574 0.9787 28 6 4.3258 -8.2015 0.8717 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6246 -2.5570 0.8897 32 1 3.1565 -3.4355 -0.0009 33 1 1.3242 -7.4675 -0.0775 34 1 2.0230 -9.6578 -1.1379 35 1 3.5826 -11.5258 -0.9601 36 1 8.2045 -12.3383 1.5251 37 1 4.5242 -7.2689 1.3789 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427848254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:17 Heat of formation + Delta-G solvation = -94.492452 kcal Electronic energy + Delta-G solvation = -27182.527526 eV Core-core repulsion = 22596.485198 eV Total energy + Delta-G solvation = -4586.042328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.70802 -47.71117 -42.59532 -40.74020 -38.63747 -37.44285 -35.00639 -34.16724 -33.53936 -32.43763 -30.71587 -29.95941 -27.93977 -27.13859 -24.74215 -23.26508 -22.78552 -21.71830 -21.61899 -20.09620 -19.25189 -18.56348 -18.21148 -17.98925 -17.67958 -16.96162 -16.58415 -16.10226 -15.82370 -15.54847 -15.37455 -15.12837 -14.78898 -14.55863 -14.31875 -14.28228 -14.05350 -13.71037 -13.59939 -13.28062 -13.14537 -12.55078 -12.18250 -12.12641 -12.10512 -11.97830 -11.45004 -11.28031 -11.07157 -10.96607 -10.64146 -10.39246 -10.26174 -9.54552 -9.26048 -8.89402 -8.80915 -8.21018 -8.13315 -6.27412 -4.35073 0.36382 1.05658 1.61186 2.09536 2.15438 2.49345 2.75763 3.19860 3.26415 3.29190 3.37286 3.44785 3.59493 3.90693 4.00263 4.18757 4.27243 4.28483 4.58759 4.79992 4.86688 4.94688 4.98561 5.09489 5.10342 5.58782 5.77151 5.82482 5.99233 6.12196 6.46344 6.72008 6.87162 6.99992 7.10086 7.20651 7.29248 7.47709 7.71348 7.80714 8.28279 8.47097 8.75570 9.31464 10.82574 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.017766 B = 0.002057 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.705236 B =13611.568900 C =14889.989666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.246 3.754 10 N -0.669 5.669 11 C 0.491 3.509 12 O -0.534 6.534 13 C 0.509 3.491 14 O -0.502 6.502 15 N -0.648 5.648 16 C 0.180 3.820 17 C -0.140 4.140 18 C -0.035 4.035 19 C 0.026 3.974 20 N -0.447 5.447 21 C 0.196 3.804 22 C 0.359 3.641 23 F -0.187 7.187 24 F -0.188 7.188 25 N -0.576 5.576 26 H 0.429 0.571 27 C 0.088 3.912 28 C -0.122 4.122 29 H 0.268 0.732 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.404 0.596 33 H 0.427 0.573 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.154 0.846 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.263 -24.277 2.477 27.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.586 4.586 8 H 0.084 0.916 9 C 0.126 3.874 10 N -0.318 5.318 11 C 0.270 3.730 12 O -0.413 6.413 13 C 0.292 3.708 14 O -0.375 6.375 15 N -0.296 5.296 16 C 0.083 3.917 17 C -0.162 4.162 18 C -0.055 4.055 19 C -0.093 4.093 20 N -0.168 5.168 21 C -0.073 4.073 22 C 0.304 3.696 23 F -0.168 7.168 24 F -0.169 7.169 25 N -0.188 5.188 26 H 0.269 0.731 27 C -0.024 4.024 28 C -0.145 4.145 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.239 0.761 33 H 0.266 0.734 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.171 0.829 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.111 -24.853 2.183 27.733 hybrid contribution 0.661 2.237 0.619 2.413 sum 12.772 -22.616 2.801 26.124 Atomic orbital electron populations 1.69966 1.06108 1.27572 1.48493 1.24942 0.94968 0.99548 0.94419 0.86355 0.79631 0.82276 0.78351 1.20336 1.20919 1.19644 1.21187 0.93492 0.90074 1.53849 0.91563 1.19368 0.88114 0.81405 0.98474 1.46444 1.12764 1.04974 1.67645 1.19613 0.88045 0.84464 0.80919 1.90747 1.15648 1.84478 1.50380 1.20984 0.89370 0.84250 0.76181 1.90752 1.16476 1.84580 1.45738 1.43248 1.11344 1.03907 1.71054 1.17318 0.91027 0.87849 0.95478 1.20530 1.01787 0.92167 1.01698 1.19802 0.90201 0.99080 0.96375 1.18948 0.96737 0.90164 1.03485 1.70158 1.01989 1.30689 1.13930 1.23609 0.98776 0.83834 1.01036 1.19664 0.77968 0.96356 0.75634 1.93084 1.55179 1.79470 1.89109 1.93077 1.96404 1.97496 1.29936 1.42763 1.18983 1.13931 1.43103 0.73091 1.18564 0.88279 0.97411 0.98111 1.19820 0.94251 0.98272 1.02206 0.92274 0.94606 0.94636 0.76074 0.73386 0.84035 0.84192 0.82898 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.09 13.29 55.43 0.74 -24.35 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.55 -14.41 9.28 -34.44 -0.32 -14.73 16 8 H 0.07 1.65 7.60 -52.49 -0.40 1.26 16 9 C 0.25 6.18 5.43 -5.20 -0.03 6.16 16 10 N -0.67 -13.80 5.54 -61.96 -0.34 -14.14 16 11 C 0.49 9.26 7.89 -11.64 -0.09 9.17 16 12 O -0.53 -11.15 16.48 5.49 0.09 -11.05 16 13 C 0.51 7.94 7.61 -11.64 -0.09 7.85 16 14 O -0.50 -8.47 14.16 5.46 0.08 -8.39 16 15 N -0.65 -7.97 5.32 -10.26 -0.05 -8.02 16 16 C 0.18 2.08 6.28 -83.68 -0.53 1.55 16 17 C -0.14 -1.28 9.88 -39.77 -0.39 -1.67 16 18 C -0.03 -0.32 10.04 -39.63 -0.40 -0.72 16 19 C 0.03 0.30 7.23 -84.64 -0.61 -0.32 16 20 N -0.45 -4.95 11.27 -8.18 -0.09 -5.05 16 21 C 0.20 1.83 7.52 -154.77 -1.16 0.67 16 22 C 0.36 2.27 5.86 36.01 0.21 2.48 16 23 F -0.19 -1.41 17.32 2.25 0.04 -1.37 16 24 F -0.19 -1.37 17.32 2.25 0.04 -1.33 16 25 N -0.58 -5.53 6.24 -8.00 -0.05 -5.58 16 26 H 0.43 3.12 8.96 -40.82 -0.37 2.76 16 27 C 0.09 1.02 7.30 -84.00 -0.61 0.41 16 28 C -0.12 -1.50 8.67 -39.29 -0.34 -1.84 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.40 7.71 7.79 -40.82 -0.32 7.40 16 33 H 0.43 4.49 8.29 -40.82 -0.34 4.15 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.15 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.14 1.86 6.41 -52.49 -0.34 1.53 16 LS Contribution 344.13 15.07 5.19 5.19 Total: -1.00 -32.41 344.13 -6.86 -39.27 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -3.01 Total: 8.77 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: -4.46 Total: 10.67 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.20 Total: -57.14 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.17 Total: -19.45 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.08 Total: -2.70 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.41 -6.86 -39.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427848254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.225 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds