Wall clock time and date at job start Tue Mar 31 2020 20:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00305 * 2 1 4 4 H 1.48497 * 109.47002 * 270.00410 * 3 2 1 5 5 H 1.48498 * 109.47128 * 30.00093 * 3 2 1 6 6 H 1.48497 * 109.47401 * 150.00237 * 3 2 1 7 7 C 1.37879 * 119.99414 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99467 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00235 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47145 * 180.02562 * 9 7 2 11 11 C 1.34783 * 120.00272 * 179.97438 * 10 9 7 12 12 O 1.21357 * 119.99473 * 0.02562 * 11 10 9 13 13 C 1.49327 * 120.00090 * 179.97438 * 11 10 9 14 14 O 1.21387 * 119.99944 * 0.02562 * 13 11 10 15 15 N 1.34775 * 119.99873 * 180.02562 * 13 11 10 16 16 C 1.39773 * 119.99867 * 185.28185 * 15 13 11 17 17 C 1.39436 * 119.85615 * 213.54720 * 16 15 13 18 18 C 1.36478 * 120.59134 * 180.02562 * 17 16 15 19 19 C 1.39807 * 119.98795 * 359.97438 * 18 17 16 20 20 N 1.35828 * 133.47967 * 179.66386 * 19 18 17 21 21 C 1.30090 * 109.65611 * 179.88810 * 20 19 18 22 22 C 1.50704 * 124.95078 * 180.13115 * 21 20 19 23 23 F 1.39900 * 109.47192 * 120.32597 * 22 21 20 24 24 F 1.39893 * 109.46987 * 240.32739 * 22 21 20 25 25 N 1.36113 * 110.09699 * 0.41459 * 21 20 19 26 26 H 0.97007 * 126.35308 * 179.72988 * 25 21 20 27 27 C 1.38079 * 107.29556 * 359.74942 * 25 21 20 28 28 C 1.38537 * 119.86137 * 33.52428 * 16 15 13 29 29 H 0.97002 * 119.99246 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47075 * 60.00141 * 9 7 2 31 31 H 1.09002 * 109.46931 * 299.99891 * 9 7 2 32 32 H 0.97003 * 119.99980 * 359.97438 * 10 9 7 33 33 H 0.96999 * 120.00041 * 5.28093 * 15 13 11 34 34 H 1.07997 * 119.70287 * 0.02562 * 17 16 15 35 35 H 1.08003 * 119.99874 * 179.97438 * 18 17 16 36 36 H 1.09005 * 109.46997 * 0.32765 * 22 21 20 37 37 H 1.07998 * 120.18076 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2028 -3.6127 -0.0005 11 6 1.7535 -4.8834 0.0000 12 8 0.5604 -5.1051 0.0000 13 6 2.7239 -6.0185 -0.0006 14 8 3.9173 -5.7967 -0.0011 15 7 2.2745 -7.2891 -0.0006 16 6 3.1780 -8.3498 0.1103 17 6 2.9203 -9.5527 -0.5463 18 6 3.7919 -10.5982 -0.4479 19 6 4.9556 -10.4684 0.3160 20 7 5.9840 -11.3082 0.6027 21 6 6.8422 -10.7029 1.3705 22 6 8.1152 -11.3165 1.8941 23 9 9.2103 -10.5647 1.4550 24 9 8.0871 -11.3265 3.2927 25 7 6.4197 -9.4368 1.6370 26 1 6.8769 -8.7819 2.1876 27 6 5.2193 -9.2574 0.9787 28 6 4.3258 -8.2015 0.8717 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6246 -2.5570 0.8897 32 1 3.1565 -3.4355 -0.0009 33 1 1.3242 -7.4675 -0.0775 34 1 2.0230 -9.6578 -1.1379 35 1 3.5826 -11.5258 -0.9601 36 1 8.2045 -12.3383 1.5251 37 1 4.5242 -7.2689 1.3789 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427848254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:17 Heat of formation + Delta-G solvation = -118.533516 kcal Electronic energy + Delta-G solvation = -27183.570025 eV Core-core repulsion = 22596.485198 eV Total energy + Delta-G solvation = -4587.084827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.25723 -48.26557 -43.38505 -42.01605 -40.04495 -38.52250 -36.54064 -35.49596 -34.40642 -34.31875 -31.46495 -30.82484 -29.73691 -28.05591 -26.18838 -24.41421 -23.96943 -22.86979 -22.41796 -21.46773 -20.48090 -19.32521 -19.28166 -18.54868 -18.46203 -18.26035 -17.63708 -17.53342 -17.12062 -16.90753 -16.46652 -16.37435 -15.97074 -15.74385 -15.40134 -15.12272 -14.95536 -14.83071 -14.61126 -14.26605 -14.08946 -13.94719 -13.88747 -13.41520 -13.06401 -12.94105 -12.77082 -12.74302 -12.66069 -12.24150 -12.09126 -11.54644 -11.49321 -11.26366 -10.85814 -10.72825 -10.07636 -9.59714 -9.04603 -8.32797 -6.48697 -0.50292 0.16122 0.41300 1.13626 1.33482 1.43411 1.44419 1.48252 1.56299 2.04184 2.08061 2.34664 2.64756 2.66528 2.97868 3.02754 3.26691 3.40502 3.69200 3.75481 3.83864 3.99330 4.09654 4.15298 4.32605 4.73673 4.95747 4.97383 5.01473 5.15712 5.16513 5.23517 5.28426 5.48470 5.61865 5.76493 5.89122 6.02904 6.40537 6.44606 6.55884 6.68914 6.96745 7.24234 8.78688 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.017766 B = 0.002057 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.705236 B =13611.568900 C =14889.989666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.981 3.019 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.562 4.562 8 H 0.079 0.921 9 C 0.263 3.737 10 N -0.673 5.673 11 C 0.495 3.505 12 O -0.554 6.554 13 C 0.521 3.479 14 O -0.516 6.516 15 N -0.629 5.629 16 C 0.163 3.837 17 C -0.128 4.128 18 C -0.032 4.032 19 C 0.012 3.988 20 N -0.463 5.463 21 C 0.199 3.801 22 C 0.365 3.635 23 F -0.194 7.194 24 F -0.193 7.193 25 N -0.576 5.576 26 H 0.437 0.563 27 C 0.069 3.931 28 C -0.133 4.133 29 H 0.271 0.729 30 H 0.007 0.993 31 H 0.006 0.994 32 H 0.413 0.587 33 H 0.437 0.563 34 H 0.174 0.826 35 H 0.168 0.832 36 H 0.192 0.808 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.724 -25.685 2.130 29.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.600 4.600 8 H 0.097 0.903 9 C 0.141 3.859 10 N -0.323 5.323 11 C 0.274 3.726 12 O -0.434 6.434 13 C 0.303 3.697 14 O -0.390 6.390 15 N -0.276 5.276 16 C 0.067 3.933 17 C -0.149 4.149 18 C -0.052 4.052 19 C -0.107 4.107 20 N -0.184 5.184 21 C -0.070 4.070 22 C 0.310 3.690 23 F -0.175 7.175 24 F -0.174 7.174 25 N -0.188 5.188 26 H 0.278 0.722 27 C -0.043 4.043 28 C -0.157 4.157 29 H 0.080 0.920 30 H 0.025 0.975 31 H 0.024 0.976 32 H 0.249 0.751 33 H 0.277 0.723 34 H 0.191 0.809 35 H 0.185 0.815 36 H 0.208 0.792 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.591 -26.313 1.847 29.674 hybrid contribution 0.217 2.525 0.758 2.645 sum 13.808 -23.788 2.605 27.629 Atomic orbital electron populations 1.70097 1.07913 1.28720 1.49469 1.25945 0.95810 1.03507 0.93728 0.85206 0.78451 0.77278 0.78628 1.19599 1.20668 1.18443 1.21558 0.94243 0.90606 1.53571 0.90300 1.18839 0.88300 0.83022 0.95713 1.46165 1.12451 1.04922 1.68747 1.20123 0.88373 0.84761 0.79295 1.90729 1.16966 1.84935 1.50765 1.20120 0.88179 0.84398 0.76963 1.90761 1.16501 1.84785 1.46974 1.43030 1.12103 1.02874 1.69607 1.17517 0.90863 0.88278 0.96615 1.20799 1.02619 0.90666 1.00855 1.20160 0.89235 1.00101 0.95680 1.19406 0.97527 0.90117 1.03696 1.70171 1.02380 1.30955 1.14914 1.24274 0.99270 0.83469 0.99968 1.20043 0.76331 0.97442 0.75205 1.93073 1.55313 1.79919 1.89166 1.93069 1.96313 1.97525 1.30479 1.42864 1.18593 1.14424 1.42912 0.72176 1.18651 0.89026 0.97547 0.99067 1.19785 0.95020 0.98044 1.02823 0.92036 0.97510 0.97582 0.75076 0.72266 0.80900 0.81461 0.79183 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.47 13.29 21.45 0.28 -53.18 16 2 C 0.01 0.57 5.46 84.65 0.46 1.04 16 3 Si 0.98 41.66 29.54 68.60 2.03 43.68 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 7 C -0.56 -29.92 9.28 25.60 0.24 -29.68 16 8 H 0.08 3.90 7.60 -2.91 -0.02 3.88 16 9 C 0.26 13.70 5.43 85.63 0.46 14.17 16 10 N -0.67 -28.39 5.54 -468.28 -2.59 -30.98 16 11 C 0.49 18.92 7.89 87.23 0.69 19.60 16 12 O -0.55 -23.58 16.48 -3.27 -0.05 -23.64 16 13 C 0.52 16.15 7.61 87.23 0.66 16.81 16 14 O -0.52 -17.32 14.16 -3.36 -0.05 -17.37 16 15 N -0.63 -14.83 5.32 -304.73 -1.62 -16.45 16 16 C 0.16 3.56 6.28 38.23 0.24 3.80 16 17 C -0.13 -2.01 9.88 22.15 0.22 -1.79 16 18 C -0.03 -0.52 10.04 22.24 0.22 -0.30 16 19 C 0.01 0.25 7.23 39.47 0.29 0.53 16 20 N -0.46 -9.46 11.27 -179.81 -2.03 -11.49 16 21 C 0.20 3.43 7.52 137.90 1.04 4.47 16 22 C 0.36 3.87 5.86 71.24 0.42 4.29 16 23 F -0.19 -2.60 17.32 44.97 0.78 -1.82 16 24 F -0.19 -2.48 17.32 44.97 0.78 -1.70 16 25 N -0.58 -10.66 6.24 -179.22 -1.12 -11.78 16 26 H 0.44 6.22 8.96 -92.70 -0.83 5.39 16 27 C 0.07 1.55 7.30 38.84 0.28 1.84 16 28 C -0.13 -3.23 8.67 22.46 0.19 -3.04 16 29 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.41 15.92 7.79 -92.71 -0.72 15.20 16 33 H 0.44 8.61 8.29 -92.71 -0.77 7.84 16 34 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 35 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 36 H 0.19 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.13 3.41 6.41 -2.91 -0.02 3.39 16 Total: -1.00 -70.79 344.13 0.70 -70.08 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -1.12 Total: 22.90 kcal Atomic # 6 Polarization: 26.33 SS G_CDS: 5.42 Total: 31.75 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -7.08 Total: -123.89 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -0.10 Total: -41.00 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 1.56 Total: -3.52 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -70.79 0.70 -70.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427848254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.451 kcal (2) G-P(sol) polarization free energy of solvation -70.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds