Wall clock time and date at job start Tue Mar 31 2020 20:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47242 * 2 1 4 4 C 1.50700 * 109.47343 * 239.99219 * 2 1 3 5 5 H 1.07996 * 120.00307 * 240.00059 * 4 2 1 6 6 C 1.37876 * 119.99853 * 60.00199 * 4 2 1 7 7 N 1.31515 * 119.99966 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00211 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46968 * 59.99493 * 8 6 4 10 10 H 1.48492 * 109.47220 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46874 * 300.00088 * 8 6 4 12 12 N 1.46503 * 109.47058 * 119.99448 * 2 1 3 13 13 C 1.46497 * 120.00350 * 60.00278 * 12 2 1 14 14 S 1.65606 * 120.00081 * 240.00036 * 12 2 1 15 15 O 1.42103 * 106.39909 * 336.46286 * 14 12 2 16 16 O 1.42092 * 106.40316 * 203.53808 * 14 12 2 17 17 C 1.76205 * 107.21777 * 89.99904 * 14 12 2 18 18 C 1.39337 * 120.03238 * 269.98235 * 17 14 12 19 19 N 1.31078 * 121.74644 * 180.02562 * 18 17 14 20 20 C 1.33686 * 121.33096 * 359.74825 * 19 18 17 21 21 C 1.40610 * 121.04000 * 179.76478 * 20 19 18 22 22 C 1.36038 * 119.77866 * 180.27474 * 21 20 19 23 23 C 1.39572 * 121.03939 * 0.23133 * 22 21 20 24 24 F 1.35102 * 119.59258 * 180.02562 * 23 22 21 25 25 C 1.36340 * 120.81649 * 0.02562 * 23 22 21 26 26 C 1.40393 * 119.60083 * 0.02562 * 25 23 22 27 27 C 1.36570 * 120.03233 * 89.99955 * 17 14 12 28 28 H 1.09004 * 109.47369 * 300.00484 * 1 2 3 29 29 H 1.08992 * 109.47279 * 60.00886 * 1 2 3 30 30 H 1.09004 * 109.47172 * 180.02562 * 1 2 3 31 31 H 0.96993 * 120.00157 * 180.02562 * 7 6 4 32 32 H 1.09009 * 109.47077 * 269.99808 * 13 12 2 33 33 H 1.08996 * 109.46902 * 29.99637 * 13 12 2 34 34 H 1.08997 * 109.47534 * 150.00480 * 13 12 2 35 35 H 1.08003 * 119.12477 * 0.02562 * 18 17 14 36 36 H 1.08002 * 120.11355 * 0.55577 * 21 20 19 37 37 H 1.08002 * 119.47709 * 180.25698 * 22 21 20 38 38 H 1.08001 * 120.19912 * 179.97438 * 25 23 22 39 39 H 1.07999 * 120.92429 * 359.95773 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9428 0.8293 -2.6035 8 14 2.3214 -1.1208 -4.0078 9 1 1.8259 -2.5207 -4.0074 10 1 1.8260 -0.4212 -5.2203 11 1 3.8064 -1.1214 -4.0079 12 7 2.0183 -0.6905 1.1963 13 6 1.6645 -2.0930 1.4283 14 16 2.9704 0.1144 2.2863 15 8 3.5793 1.1831 1.5748 16 8 3.7117 -0.8786 2.9816 17 6 1.8960 0.8539 3.4711 18 6 1.4072 2.1417 3.2612 19 7 0.6066 2.7241 4.1203 20 6 0.2177 2.1038 5.2389 21 6 -0.6374 2.7362 6.1587 22 6 -1.0126 2.0832 7.2916 23 6 -0.5582 0.7915 7.5618 24 9 -0.9498 0.1701 8.6957 25 6 0.2760 0.1491 6.6956 26 6 0.6834 0.7949 5.5175 27 6 1.5418 0.1654 4.5961 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7082 1.1604 -3.4844 32 1 0.7375 -2.1442 1.9997 33 1 1.5295 -2.5968 0.4712 34 1 2.4628 -2.5816 1.9868 35 1 1.6956 2.6742 2.3669 36 1 -0.9987 3.7353 5.9643 37 1 -1.6729 2.5720 7.9928 38 1 0.6219 -0.8502 6.9148 39 1 1.9109 -0.8337 4.7747 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429231597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:17 Heat of formation + Delta-G solvation = -55.528056 kcal Electronic energy + Delta-G solvation = -27012.441326 eV Core-core repulsion = 22962.009045 eV Total energy + Delta-G solvation = -4050.432280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.27475 -41.03354 -37.18622 -36.88066 -36.28669 -35.42337 -33.91477 -32.65808 -30.96767 -30.11882 -29.19140 -25.64614 -25.27132 -24.87575 -24.06611 -22.69544 -20.88975 -19.54412 -18.26843 -18.02712 -17.77349 -17.04283 -16.63377 -16.29297 -16.01211 -15.65694 -15.28098 -14.99000 -14.54838 -14.47501 -14.07861 -13.81833 -13.58162 -13.48640 -13.32086 -13.00357 -12.78249 -12.13466 -11.96764 -11.80898 -11.79233 -11.66296 -11.44910 -11.30208 -11.20452 -11.03879 -10.97542 -10.87853 -10.53081 -10.29221 -10.11470 -9.72395 -9.37033 -9.29504 -8.60763 -8.50316 -8.09753 -6.12433 -4.19797 -0.16752 0.25205 0.78864 1.51005 2.30875 3.27809 3.32840 3.34920 3.43783 3.69585 3.78215 3.98884 4.13653 4.14749 4.30635 4.36637 4.41447 4.56336 4.72834 4.85773 5.19394 5.21366 5.30013 5.40428 5.44616 5.58611 5.64690 5.69765 5.74657 5.99511 6.16958 6.22057 6.39131 6.57428 6.70705 6.75121 6.94168 7.31176 7.53969 7.59116 7.71209 7.97201 8.19256 8.81586 9.46176 10.93206 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.003234 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.950700 B = 8656.298448 C = 8939.673597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.266 3.734 3 H 0.063 0.937 4 C -0.523 4.523 5 H 0.064 0.936 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.974 5.974 13 C 0.092 3.908 14 S 2.685 3.315 15 O -0.942 6.942 16 O -0.969 6.969 17 C -0.721 4.721 18 C 0.220 3.780 19 N -0.477 5.477 20 C 0.150 3.850 21 C -0.069 4.069 22 C -0.119 4.119 23 C 0.092 3.908 24 F -0.136 7.136 25 C -0.117 4.117 26 C -0.108 4.108 27 C 0.057 3.943 28 H 0.008 0.992 29 H 0.095 0.905 30 H 0.034 0.966 31 H 0.265 0.735 32 H 0.038 0.962 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.181 0.819 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 -0.099 17.457 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.163 3.837 3 H 0.080 0.920 4 C -0.563 4.563 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.815 5.815 13 C -0.054 4.054 14 S 2.771 3.229 15 O -0.932 6.932 16 O -0.959 6.959 17 C -0.805 4.805 18 C 0.046 3.954 19 N -0.185 5.185 20 C 0.028 3.972 21 C -0.088 4.088 22 C -0.140 4.140 23 C 0.073 3.927 24 F -0.115 7.115 25 C -0.137 4.137 26 C -0.111 4.111 27 C 0.030 3.970 28 H 0.027 0.973 29 H 0.113 0.887 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.198 0.802 36 H 0.168 0.832 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.731 0.947 17.331 17.754 hybrid contribution -0.293 -1.229 -0.160 1.273 sum -4.024 -0.282 17.171 17.639 Atomic orbital electron populations 1.22139 0.98121 0.99926 1.00656 1.18851 0.91392 0.93261 0.80163 0.91971 1.21249 1.32011 1.13208 0.89806 0.91753 1.24899 0.94854 0.94982 0.98998 1.69838 1.36160 1.22581 1.24061 0.86535 0.79390 0.79550 0.81818 1.20229 1.21197 1.20062 1.57419 1.70268 1.19617 1.34237 1.21405 0.98946 0.81865 1.03211 1.02405 0.74098 0.73652 0.72760 1.93598 1.72996 1.55856 1.70768 1.93512 1.68291 1.59041 1.75072 1.32411 1.22769 1.08400 1.16896 1.22794 0.86895 0.89267 0.96408 1.68179 1.12454 1.35516 1.02322 1.19151 0.94916 0.90335 0.92772 1.20767 0.95708 1.00662 0.91664 1.20985 1.00930 0.93370 0.98687 1.17329 0.98797 0.92196 0.84351 1.91529 1.89475 1.82308 1.48183 1.20980 0.98277 1.01168 0.93254 1.18591 1.00492 0.95882 0.96142 1.21317 0.87872 0.98557 0.89226 0.97268 0.88676 0.94686 0.92509 0.94332 0.89209 0.91518 0.80248 0.83160 0.83665 0.83463 0.82404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.97 37.15 0.33 -2.92 16 2 C 0.27 6.12 2.62 -69.08 -0.18 5.94 16 3 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 4 C -0.52 -13.36 7.99 -34.44 -0.28 -13.64 16 5 H 0.06 1.62 7.33 -52.49 -0.38 1.23 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -23.82 11.32 55.43 0.63 -23.19 16 8 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.97 -18.77 3.06 -115.86 -0.35 -19.13 16 13 C 0.09 1.49 9.65 59.85 0.58 2.07 16 14 S 2.68 48.69 5.69 -107.50 -0.61 48.08 16 15 O -0.94 -20.00 15.83 -57.17 -0.91 -20.91 16 16 O -0.97 -17.92 15.90 -57.17 -0.91 -18.82 16 17 C -0.72 -11.16 5.96 -39.78 -0.24 -11.40 16 18 C 0.22 3.47 10.65 -17.46 -0.19 3.29 16 19 N -0.48 -7.28 10.34 -10.97 -0.11 -7.39 16 20 C 0.15 2.02 6.60 -84.84 -0.56 1.46 16 21 C -0.07 -0.71 9.98 -39.48 -0.39 -1.11 16 22 C -0.12 -1.04 9.92 -39.87 -0.40 -1.43 16 23 C 0.09 0.91 7.24 -39.77 -0.29 0.62 16 24 F -0.14 -1.36 17.25 2.25 0.04 -1.32 16 25 C -0.12 -1.20 9.74 -39.45 -0.38 -1.58 16 26 C -0.11 -1.37 5.74 -106.80 -0.61 -1.98 16 27 C 0.06 0.76 9.34 -39.22 -0.37 0.39 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 30 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.09 1.53 7.02 -51.93 -0.36 1.17 16 34 H 0.07 0.97 7.02 -51.93 -0.36 0.61 16 35 H 0.18 2.74 7.59 -52.48 -0.40 2.34 16 36 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.16 1.70 7.65 -52.49 -0.40 1.30 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -30.64 345.97 -9.33 -39.97 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -4.23 Total: 0.82 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -3.06 Total: -18.68 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.16 Total: -49.71 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -1.81 Total: -39.73 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 48.69 SS G_CDS: -0.61 Total: 48.08 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.64 -9.33 -39.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429231597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.559 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds