Wall clock time and date at job start Tue Mar 31 2020 20:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47242 * 2 1 4 4 C 1.50700 * 109.47343 * 239.99219 * 2 1 3 5 5 H 1.07996 * 120.00307 * 240.00059 * 4 2 1 6 6 C 1.37876 * 119.99853 * 60.00199 * 4 2 1 7 7 N 1.31515 * 119.99966 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00211 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46968 * 59.99493 * 8 6 4 10 10 H 1.48492 * 109.47220 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46874 * 300.00088 * 8 6 4 12 12 N 1.46503 * 109.47058 * 119.99448 * 2 1 3 13 13 C 1.46497 * 120.00350 * 60.00278 * 12 2 1 14 14 S 1.65606 * 120.00081 * 240.00036 * 12 2 1 15 15 O 1.42103 * 106.39909 * 336.46286 * 14 12 2 16 16 O 1.42092 * 106.40316 * 203.53808 * 14 12 2 17 17 C 1.76205 * 107.21777 * 89.99904 * 14 12 2 18 18 C 1.39337 * 120.03238 * 269.98235 * 17 14 12 19 19 N 1.31078 * 121.74644 * 180.02562 * 18 17 14 20 20 C 1.33686 * 121.33096 * 359.74825 * 19 18 17 21 21 C 1.40610 * 121.04000 * 179.76478 * 20 19 18 22 22 C 1.36038 * 119.77866 * 180.27474 * 21 20 19 23 23 C 1.39572 * 121.03939 * 0.23133 * 22 21 20 24 24 F 1.35102 * 119.59258 * 180.02562 * 23 22 21 25 25 C 1.36340 * 120.81649 * 0.02562 * 23 22 21 26 26 C 1.40393 * 119.60083 * 0.02562 * 25 23 22 27 27 C 1.36570 * 120.03233 * 89.99955 * 17 14 12 28 28 H 1.09004 * 109.47369 * 300.00484 * 1 2 3 29 29 H 1.08992 * 109.47279 * 60.00886 * 1 2 3 30 30 H 1.09004 * 109.47172 * 180.02562 * 1 2 3 31 31 H 0.96993 * 120.00157 * 180.02562 * 7 6 4 32 32 H 1.09009 * 109.47077 * 269.99808 * 13 12 2 33 33 H 1.08996 * 109.46902 * 29.99637 * 13 12 2 34 34 H 1.08997 * 109.47534 * 150.00480 * 13 12 2 35 35 H 1.08003 * 119.12477 * 0.02562 * 18 17 14 36 36 H 1.08002 * 120.11355 * 0.55577 * 21 20 19 37 37 H 1.08002 * 119.47709 * 180.25698 * 22 21 20 38 38 H 1.08001 * 120.19912 * 179.97438 * 25 23 22 39 39 H 1.07999 * 120.92429 * 359.95773 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9428 0.8293 -2.6035 8 14 2.3214 -1.1208 -4.0078 9 1 1.8259 -2.5207 -4.0074 10 1 1.8260 -0.4212 -5.2203 11 1 3.8064 -1.1214 -4.0079 12 7 2.0183 -0.6905 1.1963 13 6 1.6645 -2.0930 1.4283 14 16 2.9704 0.1144 2.2863 15 8 3.5793 1.1831 1.5748 16 8 3.7117 -0.8786 2.9816 17 6 1.8960 0.8539 3.4711 18 6 1.4072 2.1417 3.2612 19 7 0.6066 2.7241 4.1203 20 6 0.2177 2.1038 5.2389 21 6 -0.6374 2.7362 6.1587 22 6 -1.0126 2.0832 7.2916 23 6 -0.5582 0.7915 7.5618 24 9 -0.9498 0.1701 8.6957 25 6 0.2760 0.1491 6.6956 26 6 0.6834 0.7949 5.5175 27 6 1.5418 0.1654 4.5961 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7082 1.1604 -3.4844 32 1 0.7375 -2.1442 1.9997 33 1 1.5295 -2.5968 0.4712 34 1 2.4628 -2.5816 1.9868 35 1 1.6956 2.6742 2.3669 36 1 -0.9987 3.7353 5.9643 37 1 -1.6729 2.5720 7.9928 38 1 0.6219 -0.8502 6.9148 39 1 1.9109 -0.8337 4.7747 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429231597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:16 Heat of formation + Delta-G solvation = -75.055031 kcal Electronic energy + Delta-G solvation = -27013.288079 eV Core-core repulsion = 22962.009045 eV Total energy + Delta-G solvation = -4051.279034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.05008 -42.00787 -38.43270 -38.06740 -37.91349 -36.94750 -34.91101 -34.51480 -31.92347 -31.03062 -30.91552 -27.23144 -27.02762 -25.86585 -25.07354 -23.58158 -22.60350 -20.66677 -19.50999 -18.99419 -18.93441 -18.58861 -18.17488 -17.57268 -17.02733 -16.79404 -16.56813 -16.25101 -15.80538 -15.53129 -15.20660 -15.01338 -14.81028 -14.63084 -14.43784 -14.42081 -13.98664 -13.77763 -13.45805 -13.20341 -13.15261 -12.99401 -12.75140 -12.68881 -12.63352 -12.61407 -12.45199 -12.20965 -12.11090 -12.05449 -11.86733 -11.17754 -10.82163 -10.47393 -10.23534 -9.67123 -9.48759 -8.09134 -6.22606 -1.11462 -0.75383 -0.59427 0.59093 1.36515 1.46809 1.48733 1.55349 2.06716 2.46610 2.62812 2.77758 2.93903 3.04178 3.19195 3.19999 3.30024 3.51925 3.63422 3.73028 3.92159 4.14272 4.20705 4.39675 4.44504 4.57794 4.76353 4.78129 4.81785 4.85654 4.91505 4.98171 5.02764 5.15125 5.22100 5.27435 5.54727 5.62742 5.68717 5.87027 6.12271 6.30046 6.52817 6.84511 7.46169 8.95032 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.003234 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.950700 B = 8656.298448 C = 8939.673597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.271 3.729 3 H 0.033 0.967 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.266 1.266 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.984 5.984 13 C 0.085 3.915 14 S 2.701 3.299 15 O -0.984 6.984 16 O -0.975 6.975 17 C -0.729 4.729 18 C 0.201 3.799 19 N -0.490 5.490 20 C 0.128 3.872 21 C -0.078 4.078 22 C -0.098 4.098 23 C 0.095 3.905 24 F -0.133 7.133 25 C -0.115 4.115 26 C -0.117 4.117 27 C 0.067 3.933 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.264 0.736 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.169 0.831 36 H 0.167 0.833 37 H 0.180 0.820 38 H 0.173 0.827 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.323 -1.333 20.082 20.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.167 3.833 3 H 0.051 0.949 4 C -0.578 4.578 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.781 3.219 9 H -0.191 1.191 10 H -0.210 1.210 11 H -0.203 1.203 12 N -0.824 5.824 13 C -0.060 4.060 14 S 2.791 3.209 15 O -0.974 6.974 16 O -0.965 6.965 17 C -0.818 4.818 18 C 0.027 3.973 19 N -0.198 5.198 20 C 0.007 3.993 21 C -0.097 4.097 22 C -0.118 4.118 23 C 0.076 3.924 24 F -0.112 7.112 25 C -0.134 4.134 26 C -0.120 4.120 27 C 0.040 3.960 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.186 0.814 36 H 0.185 0.815 37 H 0.198 0.802 38 H 0.191 0.809 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.906 -0.331 19.940 20.538 hybrid contribution -0.011 -0.826 -0.695 1.079 sum -4.917 -1.157 19.246 19.897 Atomic orbital electron populations 1.21928 0.97208 1.00230 1.00137 1.18487 0.91956 0.91886 0.80975 0.94932 1.21608 1.31793 1.13247 0.91102 0.91902 1.25621 0.95178 0.95682 1.01626 1.69965 1.37149 1.23686 1.24436 0.85660 0.78539 0.78997 0.78737 1.19118 1.21025 1.20305 1.57268 1.70305 1.20946 1.33888 1.21615 1.00969 0.80135 1.03291 1.01530 0.73886 0.72840 0.72606 1.93541 1.74532 1.57117 1.72246 1.93490 1.68798 1.59254 1.74931 1.31759 1.24059 1.08621 1.17334 1.22683 0.88072 0.89774 0.96801 1.68151 1.12546 1.36056 1.03095 1.19652 0.95685 0.91181 0.92768 1.20977 0.95520 1.01584 0.91595 1.21341 0.99654 0.92651 0.98119 1.17472 0.98279 0.92494 0.84144 1.91549 1.89341 1.82315 1.47978 1.21189 0.97920 1.02198 0.92141 1.18716 1.00603 0.95771 0.96935 1.21678 0.86896 0.99295 0.88128 0.95562 0.91337 0.93796 0.92640 0.91531 0.90380 0.89873 0.81365 0.81535 0.80217 0.80930 0.79808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.00 8.97 71.98 0.65 -5.35 16 2 C 0.27 12.83 2.62 44.24 0.12 12.95 16 3 H 0.03 1.74 6.91 -2.39 -0.02 1.72 16 4 C -0.54 -28.04 7.99 25.60 0.20 -27.84 16 5 H 0.06 3.20 7.33 -2.91 -0.02 3.18 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.91 -50.33 11.32 21.45 0.24 -50.09 16 8 Si 0.95 42.20 29.54 68.60 2.03 44.22 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 N -0.98 -38.15 3.06 -520.46 -1.59 -39.75 16 13 C 0.08 2.65 9.65 127.77 1.23 3.89 16 14 S 2.70 99.50 5.69 -56.49 -0.32 99.18 16 15 O -0.98 -43.97 15.83 -128.00 -2.03 -46.00 16 16 O -0.97 -35.43 15.90 -128.00 -2.03 -37.46 16 17 C -0.73 -22.55 5.96 22.14 0.13 -22.42 16 18 C 0.20 6.55 10.65 85.07 0.91 7.46 16 19 N -0.49 -15.00 10.34 -188.61 -1.95 -16.95 16 20 C 0.13 3.26 6.60 40.29 0.27 3.53 16 21 C -0.08 -1.40 9.98 22.34 0.22 -1.17 16 22 C -0.10 -1.30 9.92 22.08 0.22 -1.08 16 23 C 0.10 1.49 7.24 22.15 0.16 1.65 16 24 F -0.13 -2.10 17.25 44.97 0.78 -1.32 16 25 C -0.12 -1.94 9.74 22.35 0.22 -1.72 16 26 C -0.12 -2.69 5.74 -21.28 -0.12 -2.81 16 27 C 0.07 1.65 9.34 22.50 0.21 1.86 16 28 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.07 3.42 6.07 -2.39 -0.01 3.40 16 30 H 0.04 1.81 7.67 -2.39 -0.02 1.79 16 31 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 32 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.08 2.62 7.02 -2.39 -0.02 2.60 16 34 H 0.08 2.30 7.02 -2.39 -0.02 2.28 16 35 H 0.17 5.64 7.59 -2.91 -0.02 5.61 16 36 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 37 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 38 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.18 3.42 7.65 -2.91 -0.02 3.40 16 Total: -1.00 -67.39 345.97 1.07 -66.32 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 1.09 Total: 11.48 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 4.86 Total: -29.62 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -3.30 Total: -106.80 kcal Atomic # 8 Polarization: -79.40 SS G_CDS: -4.06 Total: -83.46 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.78 Total: -1.32 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 99.50 SS G_CDS: -0.32 Total: 99.18 kcal Total: -67.39 1.07 -66.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429231597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.733 kcal (2) G-P(sol) polarization free energy of solvation -67.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds