Wall clock time and date at job start Tue Mar 31 2020 20:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.36583 * 119.73597 * 89.99849 * 3 2 1 5 5 S 1.76201 * 118.46634 * 359.97438 * 4 3 2 6 6 C 1.81003 * 99.99983 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47291 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47092 * 59.99824 * 7 6 5 9 9 O 1.42902 * 109.47139 * 299.99700 * 7 6 5 10 10 C 1.50694 * 109.47078 * 179.97438 * 7 6 5 11 11 H 1.08004 * 120.00266 * 0.02562 * 10 7 6 12 12 C 1.37875 * 120.00088 * 179.97438 * 10 7 6 13 13 N 1.31510 * 120.00005 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 120.00038 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.46823 * 90.00587 * 14 12 10 16 16 H 1.48498 * 109.47106 * 209.99830 * 14 12 10 17 17 H 1.48492 * 109.47515 * 330.00521 * 14 12 10 18 18 N 1.30989 * 123.06700 * 179.97438 * 4 3 2 19 19 C 1.35437 * 121.53199 * 0.02562 * 18 4 3 20 20 C 1.39768 * 121.54247 * 179.97438 * 19 18 4 21 21 C 1.36598 * 119.83951 * 180.02562 * 20 19 18 22 22 C 1.39103 * 120.95139 * 359.97438 * 21 20 19 23 23 F 1.35095 * 119.73409 * 180.02562 * 22 21 20 24 24 C 1.37937 * 120.53456 * 0.02562 * 22 21 20 25 25 C 1.39458 * 119.38232 * 0.02562 * 24 22 21 26 26 C 1.35313 * 119.73797 * 269.72544 * 3 2 1 27 27 O 1.21732 * 121.21613 * 0.02562 * 26 3 2 28 28 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 32 32 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 33 33 H 1.09005 * 109.46509 * 299.99776 * 6 5 4 34 34 H 1.09004 * 109.47021 * 59.99510 * 6 5 4 35 35 H 0.96698 * 113.99991 * 300.00411 * 9 7 6 36 36 H 0.97003 * 120.00005 * 179.97438 * 13 12 10 37 37 H 1.08006 * 120.07813 * 0.04250 * 20 19 18 38 38 H 1.07993 * 119.52501 * 179.97438 * 21 20 19 39 39 H 1.07997 * 120.30591 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2441 2.0200 1.1860 5 16 1.9340 1.1449 2.6835 6 6 2.3847 2.4167 3.8899 7 6 2.1900 1.8692 5.3052 8 1 2.8236 0.9936 5.4464 9 8 0.8214 1.5016 5.4896 10 6 2.5659 2.9279 6.3096 11 1 2.9090 3.8948 5.9722 12 6 2.4708 2.6626 7.6592 13 7 2.0526 1.4854 8.0701 14 14 2.9375 3.9748 8.9042 15 1 1.7421 4.7920 9.2336 16 1 3.4491 3.3265 10.1383 17 1 3.9919 4.8489 8.3305 18 7 2.6805 3.2527 1.2621 19 6 2.9386 3.9826 0.1508 20 6 3.4038 5.2981 0.2318 21 6 3.6524 6.0027 -0.9118 22 6 3.4500 5.4300 -2.1632 23 9 3.7043 6.1492 -3.2782 24 6 2.9917 4.1338 -2.2749 25 6 2.7310 3.3983 -1.1192 26 6 2.2474 2.0122 -1.1749 27 8 2.0547 1.4534 -2.2391 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.4286 2.6974 3.7490 34 1 1.7508 3.2922 3.7489 35 1 0.1992 2.2334 5.3786 36 1 1.9860 1.2986 9.0196 37 1 3.5665 5.7563 1.1962 38 1 4.0113 7.0189 -0.8433 39 1 2.8362 3.6928 -3.2484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450916483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:19 Heat of formation + Delta-G solvation = -83.976396 kcal Electronic energy + Delta-G solvation = -26252.701097 eV Core-core repulsion = 22201.035204 eV Total energy + Delta-G solvation = -4051.665893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.06784 -41.67078 -38.71515 -37.54223 -36.09547 -34.90572 -32.29696 -31.95997 -30.73175 -30.17501 -29.54169 -25.56352 -25.35099 -24.94644 -22.89718 -22.38535 -21.29232 -19.43088 -19.13570 -17.85020 -17.32270 -16.77897 -16.38289 -16.26634 -15.92162 -15.66534 -15.04302 -14.75472 -14.51324 -14.35784 -14.23451 -14.20598 -13.93722 -13.66215 -13.46782 -13.38235 -13.19013 -12.59591 -12.39581 -12.09457 -11.85869 -11.56347 -11.48648 -11.33108 -11.09265 -10.98789 -10.56698 -10.29165 -10.12184 -10.07866 -10.00640 -9.55257 -9.31546 -8.74456 -8.62782 -8.44267 -7.50130 -6.17420 -4.37470 0.19387 0.48866 1.12283 1.88993 2.22367 2.42080 2.56157 3.19839 3.27745 3.30246 3.66993 3.82797 4.11032 4.13472 4.27638 4.43783 4.63546 4.74788 4.87034 4.95960 5.07037 5.10270 5.24042 5.42398 5.48158 5.65363 5.69188 5.73218 5.82114 5.86531 5.87865 5.95631 5.99941 6.05827 6.33615 6.50691 6.57158 7.39786 7.47059 7.58699 7.66383 7.91156 8.63601 9.14332 9.38885 10.86619 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013176 B = 0.003307 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.613531 B = 8465.371384 C =10417.793723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.086 3.914 3 N -0.527 5.527 4 C 0.369 3.631 5 S 0.008 5.992 6 C -0.117 4.117 7 C 0.242 3.758 8 H 0.067 0.933 9 O -0.560 6.560 10 C -0.569 4.569 11 H 0.062 0.938 12 C 0.082 3.918 13 N -0.856 5.856 14 Si 0.895 3.105 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.272 1.272 18 N -0.533 5.533 19 C 0.174 3.826 20 C -0.088 4.088 21 C -0.100 4.100 22 C 0.064 3.936 23 F -0.138 7.138 24 C -0.070 4.070 25 C -0.189 4.189 26 C 0.557 3.443 27 O -0.512 6.512 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.350 0.650 36 H 0.263 0.737 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 2.518 -16.303 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.036 4.036 3 N -0.251 5.251 4 C -0.002 4.002 5 S 0.246 5.754 6 C -0.266 4.266 7 C 0.182 3.818 8 H 0.084 0.916 9 O -0.363 6.363 10 C -0.609 4.609 11 H 0.080 0.920 12 C -0.126 4.126 13 N -0.491 5.491 14 Si 0.722 3.278 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.197 1.197 18 N -0.260 5.260 19 C 0.059 3.941 20 C -0.108 4.108 21 C -0.120 4.120 22 C 0.043 3.957 23 F -0.117 7.117 24 C -0.090 4.090 25 C -0.197 4.197 26 C 0.349 3.651 27 O -0.387 6.387 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.194 0.806 36 H 0.073 0.927 37 H 0.169 0.831 38 H 0.162 0.838 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.111 0.742 -15.872 15.889 hybrid contribution 0.511 2.417 -0.581 2.537 sum 0.622 3.158 -16.453 16.765 Atomic orbital electron populations 1.22121 0.93570 1.03675 1.03269 1.22061 0.96564 0.79624 1.05359 1.46512 1.57335 1.15856 1.05441 1.25694 0.90566 0.92059 0.91925 1.86325 1.78422 1.20486 0.90184 1.25085 1.05823 0.98331 0.97326 1.19296 0.81983 0.96193 0.84298 0.91553 1.86593 1.17262 1.38346 1.94088 1.21461 1.48713 0.99824 0.90903 0.92016 1.25026 0.93680 0.95362 0.98494 1.70064 1.42860 1.20841 1.15337 0.86570 0.78940 0.81633 0.80677 1.20388 1.21015 1.19653 1.69352 1.24571 1.03705 1.28352 1.18909 0.93749 0.94169 0.87282 1.20496 0.99332 0.91711 0.99282 1.20985 0.99327 1.01237 0.90500 1.17446 1.05029 0.90435 0.82797 1.91503 1.92157 1.77427 1.50584 1.20853 0.96863 0.92180 0.99126 1.20248 1.10085 0.94754 0.94643 1.18189 0.77639 0.86257 0.83045 1.90847 1.51863 1.68032 1.27950 0.92104 0.90086 0.91027 0.88032 0.87903 0.88521 0.89018 0.80605 0.92681 0.83140 0.83754 0.83538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 10.24 37.16 0.38 -1.31 16 2 C 0.09 0.95 5.60 -4.04 -0.02 0.93 16 3 N -0.53 -7.28 2.62 -117.42 -0.31 -7.59 16 4 C 0.37 5.46 7.78 -88.54 -0.69 4.77 16 5 S 0.01 0.11 19.45 -107.50 -2.09 -1.98 16 6 C -0.12 -2.10 4.41 37.16 0.16 -1.94 16 7 C 0.24 5.43 2.87 -27.89 -0.08 5.35 16 8 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 9 O -0.56 -12.75 12.32 -35.23 -0.43 -13.19 16 10 C -0.57 -14.20 8.76 -34.44 -0.30 -14.50 16 11 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 12 C 0.08 2.12 5.40 -17.82 -0.10 2.02 16 13 N -0.86 -23.59 12.84 55.43 0.71 -22.88 16 14 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 N -0.53 -8.20 8.98 -10.79 -0.10 -8.30 16 19 C 0.17 2.47 6.63 -84.53 -0.56 1.91 16 20 C -0.09 -1.02 9.98 -39.60 -0.40 -1.41 16 21 C -0.10 -1.01 9.93 -39.85 -0.40 -1.41 16 22 C 0.06 0.73 7.29 -39.37 -0.29 0.44 16 23 F -0.14 -1.58 17.26 2.25 0.04 -1.54 16 24 C -0.07 -0.88 9.65 -39.24 -0.38 -1.26 16 25 C -0.19 -2.68 5.90 -104.76 -0.62 -3.30 16 26 C 0.56 8.32 7.65 -12.51 -0.10 8.23 16 27 O -0.51 -8.31 16.30 5.16 0.08 -8.23 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 31 H 0.10 1.07 7.45 -51.93 -0.39 0.69 16 32 H 0.10 1.06 6.48 -51.93 -0.34 0.72 16 33 H 0.10 1.74 8.10 -51.91 -0.42 1.32 16 34 H 0.09 1.63 8.09 -51.91 -0.42 1.21 16 35 H 0.35 7.04 9.04 45.56 0.41 7.45 16 36 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.15 1.73 7.82 -52.49 -0.41 1.32 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -29.23 354.34 -8.79 -38.01 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -3.64 Total: 6.99 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -3.38 Total: -1.47 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.31 Total: -38.76 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.35 Total: -21.41 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -2.09 Total: -1.98 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.23 -8.79 -38.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450916483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.963 kcal (2) G-P(sol) polarization free energy of solvation -29.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds