Wall clock time and date at job start Tue Mar 31 2020 20:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.36583 * 119.73597 * 89.99849 * 3 2 1 5 5 S 1.76201 * 118.46634 * 359.97438 * 4 3 2 6 6 C 1.81003 * 99.99983 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47291 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47092 * 59.99824 * 7 6 5 9 9 O 1.42902 * 109.47139 * 299.99700 * 7 6 5 10 10 C 1.50694 * 109.47078 * 179.97438 * 7 6 5 11 11 H 1.08004 * 120.00266 * 0.02562 * 10 7 6 12 12 C 1.37875 * 120.00088 * 179.97438 * 10 7 6 13 13 N 1.31510 * 120.00005 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 120.00038 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.46823 * 90.00587 * 14 12 10 16 16 H 1.48498 * 109.47106 * 209.99830 * 14 12 10 17 17 H 1.48492 * 109.47515 * 330.00521 * 14 12 10 18 18 N 1.30989 * 123.06700 * 179.97438 * 4 3 2 19 19 C 1.35437 * 121.53199 * 0.02562 * 18 4 3 20 20 C 1.39768 * 121.54247 * 179.97438 * 19 18 4 21 21 C 1.36598 * 119.83951 * 180.02562 * 20 19 18 22 22 C 1.39103 * 120.95139 * 359.97438 * 21 20 19 23 23 F 1.35095 * 119.73409 * 180.02562 * 22 21 20 24 24 C 1.37937 * 120.53456 * 0.02562 * 22 21 20 25 25 C 1.39458 * 119.38232 * 0.02562 * 24 22 21 26 26 C 1.35313 * 119.73797 * 269.72544 * 3 2 1 27 27 O 1.21732 * 121.21613 * 0.02562 * 26 3 2 28 28 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 32 32 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 33 33 H 1.09005 * 109.46509 * 299.99776 * 6 5 4 34 34 H 1.09004 * 109.47021 * 59.99510 * 6 5 4 35 35 H 0.96698 * 113.99991 * 300.00411 * 9 7 6 36 36 H 0.97003 * 120.00005 * 179.97438 * 13 12 10 37 37 H 1.08006 * 120.07813 * 0.04250 * 20 19 18 38 38 H 1.07993 * 119.52501 * 179.97438 * 21 20 19 39 39 H 1.07997 * 120.30591 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2441 2.0200 1.1860 5 16 1.9340 1.1449 2.6835 6 6 2.3847 2.4167 3.8899 7 6 2.1900 1.8692 5.3052 8 1 2.8236 0.9936 5.4464 9 8 0.8214 1.5016 5.4896 10 6 2.5659 2.9279 6.3096 11 1 2.9090 3.8948 5.9722 12 6 2.4708 2.6626 7.6592 13 7 2.0526 1.4854 8.0701 14 14 2.9375 3.9748 8.9042 15 1 1.7421 4.7920 9.2336 16 1 3.4491 3.3265 10.1383 17 1 3.9919 4.8489 8.3305 18 7 2.6805 3.2527 1.2621 19 6 2.9386 3.9826 0.1508 20 6 3.4038 5.2981 0.2318 21 6 3.6524 6.0027 -0.9118 22 6 3.4500 5.4300 -2.1632 23 9 3.7043 6.1492 -3.2782 24 6 2.9917 4.1338 -2.2749 25 6 2.7310 3.3983 -1.1192 26 6 2.2474 2.0122 -1.1749 27 8 2.0547 1.4534 -2.2391 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.4286 2.6974 3.7490 34 1 1.7508 3.2922 3.7489 35 1 0.1992 2.2334 5.3786 36 1 1.9860 1.2986 9.0196 37 1 3.5665 5.7563 1.1962 38 1 4.0113 7.0189 -0.8433 39 1 2.8362 3.6928 -3.2484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450916483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:18 Heat of formation + Delta-G solvation = -100.961638 kcal Electronic energy + Delta-G solvation = -26253.437632 eV Core-core repulsion = 22201.035204 eV Total energy + Delta-G solvation = -4052.402428 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.99429 -42.74587 -39.72869 -38.65222 -37.87478 -35.92988 -34.24462 -32.93885 -31.69196 -31.62538 -30.77389 -27.35262 -26.35457 -26.04744 -23.82295 -23.48271 -22.91368 -20.49329 -20.21503 -19.20893 -18.88757 -17.77925 -17.45585 -17.32689 -16.94555 -16.65860 -16.61671 -16.25612 -16.09097 -15.91275 -15.41040 -15.18979 -15.11922 -14.67498 -14.60873 -14.35556 -14.29109 -14.03324 -13.42097 -13.30951 -13.16170 -12.87386 -12.80470 -12.75405 -12.68924 -12.34531 -12.09245 -11.75875 -11.45378 -11.18373 -11.09386 -11.03127 -10.69080 -10.48590 -10.27955 -9.72671 -8.64374 -8.13064 -6.38406 -0.84742 -0.49631 -0.09226 0.80784 1.03108 1.35595 1.41056 1.45662 1.48181 1.57281 2.43183 2.64475 2.80605 3.08494 3.14643 3.17846 3.47752 3.73827 3.87319 4.00366 4.01109 4.15942 4.17699 4.29016 4.32677 4.36121 4.51091 4.60452 4.78023 4.79941 4.92182 4.96361 4.97770 5.05659 5.15900 5.30571 5.56835 5.57755 5.70466 6.01914 6.35573 6.47743 6.70919 7.33875 7.51176 8.91175 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013176 B = 0.003307 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.613531 B = 8465.371384 C =10417.793723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.079 3.921 3 N -0.525 5.525 4 C 0.361 3.639 5 S 0.033 5.967 6 C -0.108 4.108 7 C 0.244 3.756 8 H 0.036 0.964 9 O -0.572 6.572 10 C -0.579 4.579 11 H 0.066 0.934 12 C 0.031 3.969 13 N -0.896 5.896 14 Si 0.958 3.042 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.264 1.264 18 N -0.542 5.542 19 C 0.152 3.848 20 C -0.085 4.085 21 C -0.083 4.083 22 C 0.071 3.929 23 F -0.136 7.136 24 C -0.078 4.078 25 C -0.203 4.203 26 C 0.551 3.449 27 O -0.533 6.533 28 H 0.050 0.950 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.361 0.639 36 H 0.262 0.738 37 H 0.166 0.834 38 H 0.181 0.819 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.621 4.214 -17.019 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.041 4.041 3 N -0.248 5.248 4 C -0.011 4.011 5 S 0.271 5.729 6 C -0.256 4.256 7 C 0.185 3.815 8 H 0.054 0.946 9 O -0.377 6.377 10 C -0.618 4.618 11 H 0.084 0.916 12 C -0.172 4.172 13 N -0.533 5.533 14 Si 0.783 3.217 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.188 1.188 18 N -0.270 5.270 19 C 0.037 3.963 20 C -0.105 4.105 21 C -0.103 4.103 22 C 0.050 3.950 23 F -0.114 7.114 24 C -0.099 4.099 25 C -0.210 4.210 26 C 0.344 3.656 27 O -0.410 6.410 28 H 0.069 0.931 29 H 0.124 0.876 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.206 0.794 36 H 0.071 0.929 37 H 0.184 0.816 38 H 0.198 0.802 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.497 2.463 -16.596 16.785 hybrid contribution 0.410 1.940 -0.513 2.048 sum 0.907 4.403 -17.110 17.690 Atomic orbital electron populations 1.22099 0.92626 1.05025 1.02315 1.22289 0.97351 0.78514 1.05994 1.46562 1.56875 1.16570 1.04838 1.25527 0.91450 0.92233 0.91932 1.86128 1.78769 1.18640 0.89365 1.24586 1.05852 0.99093 0.96115 1.19019 0.81372 0.94483 0.86666 0.94575 1.86534 1.17573 1.39122 1.94429 1.21878 1.47741 1.00487 0.91720 0.91595 1.25817 0.93724 0.97128 1.00531 1.70187 1.44744 1.22810 1.15536 0.85578 0.78782 0.79169 0.78182 1.19928 1.21223 1.18816 1.69289 1.24295 1.04001 1.29369 1.19186 0.95035 0.95229 0.86860 1.20737 0.98547 0.90697 1.00559 1.21303 0.97426 1.02445 0.89141 1.17550 1.04063 0.89953 0.83393 1.91517 1.92014 1.77232 1.50651 1.20918 0.97314 0.92808 0.98819 1.20314 1.10789 0.94628 0.95286 1.18392 0.77520 0.86707 0.83011 1.90824 1.53066 1.68594 1.28488 0.93090 0.87622 0.91806 0.87445 0.87099 0.88715 0.88729 0.79378 0.92861 0.81639 0.80189 0.83363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 10.24 71.98 0.74 -2.40 16 2 C 0.08 1.71 5.60 86.38 0.48 2.20 16 3 N -0.52 -14.28 2.62 -643.31 -1.69 -15.97 16 4 C 0.36 10.48 7.78 179.62 1.40 11.88 16 5 S 0.03 0.99 19.45 -56.49 -1.10 -0.10 16 6 C -0.11 -3.83 4.41 71.98 0.32 -3.51 16 7 C 0.24 11.07 2.87 29.85 0.09 11.15 16 8 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 9 O -0.57 -26.23 12.32 -148.98 -1.84 -28.07 16 10 C -0.58 -28.84 8.76 25.60 0.22 -28.62 16 11 H 0.07 3.16 7.74 -2.91 -0.02 3.13 16 12 C 0.03 1.63 5.40 84.65 0.46 2.08 16 13 N -0.90 -50.04 12.84 21.45 0.28 -49.77 16 14 Si 0.96 40.51 29.54 68.60 2.03 42.54 16 15 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 16 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 18 N -0.54 -16.23 8.98 -188.06 -1.69 -17.92 16 19 C 0.15 4.11 6.63 39.72 0.26 4.38 16 20 C -0.09 -1.77 9.98 22.26 0.22 -1.55 16 21 C -0.08 -1.41 9.93 22.09 0.22 -1.19 16 22 C 0.07 1.45 7.29 22.41 0.16 1.62 16 23 F -0.14 -2.76 17.26 44.97 0.78 -1.98 16 24 C -0.08 -1.88 9.65 22.49 0.22 -1.66 16 25 C -0.20 -5.60 5.90 -19.95 -0.12 -5.72 16 26 C 0.55 16.37 7.65 86.43 0.66 17.04 16 27 O -0.53 -17.31 16.30 -4.45 -0.07 -17.38 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.33 8.06 -2.39 -0.02 1.31 16 31 H 0.11 2.21 7.45 -2.39 -0.02 2.19 16 32 H 0.11 2.19 6.48 -2.39 -0.02 2.17 16 33 H 0.09 3.38 8.10 -2.39 -0.02 3.36 16 34 H 0.09 3.29 8.09 -2.39 -0.02 3.27 16 35 H 0.36 14.49 9.04 -74.06 -0.67 13.82 16 36 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 37 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16 38 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 39 H 0.15 3.42 7.82 -2.91 -0.02 3.40 16 Total: -1.00 -62.54 354.34 2.47 -60.08 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.44 Total: 22.88 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 5.33 Total: 5.70 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -3.10 Total: -83.65 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -1.91 Total: -45.45 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -1.10 Total: -0.10 kcal Total: -62.54 2.47 -60.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450916483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.883 kcal (2) G-P(sol) polarization free energy of solvation -62.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds