Wall clock time and date at job start Tue Mar 31 2020 20:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 114.00105 * 2 1 4 4 C 1.53005 * 109.47102 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47096 * 64.99886 * 4 3 2 6 6 C 1.33304 * 120.00029 * 278.59441 * 5 4 3 7 7 H 1.08003 * 119.99667 * 61.33779 * 6 5 4 8 8 C 1.46782 * 119.99987 * 241.33238 * 6 5 4 9 9 N 1.29313 * 120.00131 * 46.36298 * 8 6 5 10 10 Si 1.86799 * 120.00055 * 226.36339 * 8 6 5 11 11 H 1.48502 * 109.47484 * 65.00079 * 10 8 6 12 12 H 1.48496 * 109.47384 * 185.00288 * 10 8 6 13 13 H 1.48503 * 109.47179 * 304.99843 * 10 8 6 14 14 C 1.34781 * 119.99636 * 98.59102 * 5 4 3 15 15 O 1.21516 * 119.99574 * 186.35181 * 14 5 4 16 16 C 1.47431 * 120.00220 * 6.35825 * 14 5 4 17 17 C 1.39864 * 120.08973 * 136.37598 * 16 14 5 18 18 C 1.38036 * 119.90287 * 179.97438 * 17 16 14 19 19 C 1.39645 * 119.98318 * 0.06619 * 18 17 16 20 20 C 1.38863 * 120.07096 * 359.95405 * 19 18 17 21 21 N 1.48007 * 119.88886 * 179.97438 * 20 19 18 22 22 O 1.31701 * 120.00118 * 174.93149 * 21 20 19 23 23 O 1.31707 * 120.00179 * 354.93234 * 21 20 19 24 24 C 1.37758 * 120.22305 * 0.02562 * 20 19 18 25 25 O 1.36335 * 108.57473 * 179.97438 * 19 18 17 26 26 C 1.43964 * 105.54500 * 17.35457 * 25 19 18 27 27 O 1.36530 * 131.43918 * 180.02562 * 18 17 16 28 28 H 1.09000 * 109.46631 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47028 * 299.99829 * 1 2 3 30 30 H 1.08992 * 109.47115 * 60.00004 * 1 2 3 31 31 H 1.08999 * 109.47538 * 59.99859 * 3 2 1 32 32 H 1.09001 * 109.47474 * 300.00006 * 3 2 1 33 33 H 1.08998 * 109.46894 * 304.99702 * 4 3 2 34 34 H 1.09010 * 109.46809 * 184.99720 * 4 3 2 35 35 H 0.96996 * 120.00075 * 184.98320 * 9 8 6 36 36 H 1.08001 * 120.04786 * 0.06102 * 17 16 14 37 37 H 1.08007 * 119.99835 * 179.97438 * 24 20 19 38 38 H 1.08998 * 110.56091 * 214.17985 * 26 25 19 39 39 H 1.08994 * 110.56441 * 91.32149 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 3.9315 -0.7612 -1.3898 7 1 2.9856 -1.2787 -1.3279 8 6 5.1673 -1.5168 -1.6272 9 7 6.2178 -1.2797 -0.9113 10 14 5.2226 -2.8211 -2.9633 11 1 5.0464 -2.1782 -4.2903 12 1 6.5333 -3.5178 -2.9211 13 1 4.1322 -3.8043 -2.7408 14 6 4.4283 1.3325 -2.2617 15 8 4.6850 0.8310 -3.3384 16 6 4.6109 2.7816 -2.0611 17 6 5.7595 3.4171 -2.5438 18 6 5.9262 4.7742 -2.3543 19 6 4.9493 5.5100 -1.6803 20 6 3.8094 4.8780 -1.2010 21 7 2.7768 5.6616 -0.4867 22 8 1.6505 5.0863 -0.1192 23 8 2.9842 6.9343 -0.2185 24 6 3.6370 3.5240 -1.3873 25 8 5.3476 6.8127 -1.6252 26 6 6.3753 6.9445 -2.6247 27 8 6.9337 5.6204 -2.7189 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8464 -0.8900 33 1 3.8508 0.5684 0.8427 34 1 3.9785 2.1765 0.0902 35 1 7.0543 -1.7265 -1.1147 36 1 6.5142 2.8471 -3.0652 37 1 2.7492 3.0361 -1.0127 38 1 7.1339 7.6575 -2.3020 39 1 5.9446 7.2476 -3.5790 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457206018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:47 Heat of formation + Delta-G solvation = -64.152119 kcal Electronic energy + Delta-G solvation = -30384.727405 eV Core-core repulsion = 25878.795496 eV Total energy + Delta-G solvation = -4505.931908 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.82985 -41.39059 -40.29731 -38.76653 -38.40790 -37.76421 -36.42855 -35.65991 -34.51814 -32.97927 -31.94874 -30.70479 -28.02440 -27.55473 -27.06053 -26.54457 -24.83954 -24.15424 -23.60967 -21.81303 -20.22896 -20.02728 -19.46111 -18.83635 -18.61733 -18.08009 -17.76625 -17.38875 -17.34798 -17.02336 -16.81990 -16.29047 -16.14176 -16.01561 -15.69692 -15.48721 -15.26597 -14.57658 -14.41551 -14.40032 -14.25083 -13.86147 -13.48950 -13.22022 -13.14541 -12.93507 -12.70474 -12.63996 -12.53478 -12.42172 -12.25854 -12.09808 -11.97501 -11.94927 -10.89890 -10.70402 -10.55902 -10.46179 -9.65804 -9.42949 -8.39801 -5.95616 -2.01765 -0.79151 -0.32759 -0.26617 1.04345 1.34838 1.43290 1.51879 1.56653 1.86226 2.16661 2.37462 2.59389 2.72052 2.90871 2.96494 3.14179 3.29104 3.42980 3.57863 3.72207 3.86506 4.05113 4.12241 4.23150 4.25650 4.32016 4.38937 4.47424 4.52211 4.56989 4.63464 4.64714 4.70880 4.91275 5.04288 5.33789 5.42283 5.45609 6.37101 6.41128 6.75410 7.05720 7.40431 8.17432 8.38690 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011595 B = 0.004824 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.178938 B = 5803.030214 C = 7802.865104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.396 6.396 3 C 0.051 3.949 4 C 0.074 3.926 5 N -0.399 5.399 6 C -0.424 4.424 7 H 0.079 0.921 8 C 0.074 3.926 9 N -0.807 5.807 10 Si 0.936 3.064 11 H -0.282 1.282 12 H -0.276 1.276 13 H -0.259 1.259 14 C 0.494 3.506 15 O -0.590 6.590 16 C -0.095 4.095 17 C -0.002 4.002 18 C 0.046 3.954 19 C 0.121 3.879 20 C 0.002 3.998 21 N -0.010 5.010 22 O -0.178 6.178 23 O -0.170 6.170 24 C -0.035 4.035 25 O -0.284 6.284 26 C 0.197 3.803 27 O -0.296 6.296 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.281 0.719 36 H 0.163 0.837 37 H 0.181 0.819 38 H 0.185 0.815 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.811 14.284 -0.372 14.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C -0.027 4.027 4 C -0.048 4.048 5 N -0.115 5.115 6 C -0.550 4.550 7 H 0.096 0.904 8 C -0.147 4.147 9 N -0.434 5.434 10 Si 0.759 3.241 11 H -0.208 1.208 12 H -0.202 1.202 13 H -0.183 1.183 14 C 0.284 3.716 15 O -0.475 6.475 16 C -0.100 4.100 17 C -0.022 4.022 18 C 0.000 4.000 19 C 0.072 3.928 20 C -0.086 4.086 21 N 0.467 4.533 22 O -0.370 6.370 23 O -0.363 6.363 24 C -0.055 4.055 25 O -0.197 6.197 26 C 0.088 3.912 27 O -0.212 6.212 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.180 0.820 37 H 0.198 0.802 38 H 0.202 0.798 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.223 13.606 -0.964 13.642 hybrid contribution -0.195 -0.132 -0.301 0.382 sum 0.028 13.474 -1.265 13.533 Atomic orbital electron populations 1.22903 0.80484 1.03308 1.00571 1.88102 1.20556 1.27465 1.95331 1.23068 0.93564 0.85390 1.00643 1.22382 0.93455 0.98608 0.90373 1.41924 1.54887 1.05451 1.09206 1.19291 0.91475 0.81653 1.62587 0.90388 1.27660 0.95049 0.97392 0.94578 1.69329 1.03277 1.39931 1.30839 0.85962 0.77956 0.78654 0.81497 1.20848 1.20156 1.18331 1.18505 0.83669 0.84499 0.84929 1.90603 1.56048 1.74508 1.26380 1.19868 0.94853 0.95285 0.99981 1.20514 0.96771 0.90335 0.94562 1.19112 0.87684 0.92180 1.01048 1.19470 0.92140 0.86121 0.95094 1.19108 0.88317 0.91110 1.10098 1.50290 1.02287 1.02818 0.97942 1.96274 1.10826 1.72669 1.57182 1.96295 1.86400 0.93167 1.60463 1.21535 1.01005 0.89083 0.93838 1.87583 1.53822 1.21553 1.56786 1.26671 0.87629 0.84211 0.92711 1.87505 1.31811 1.16974 1.84915 0.89224 0.92497 0.94051 0.90120 0.93431 0.91110 0.89517 0.90747 0.81968 0.80197 0.79765 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 11.01 113.37 1.25 1.89 16 2 O -0.40 -14.87 9.12 -148.98 -1.36 -16.23 16 3 C 0.05 1.70 5.30 71.98 0.38 2.08 16 4 C 0.07 2.88 5.31 86.38 0.46 3.34 16 5 N -0.40 -19.04 2.49 -634.37 -1.58 -20.62 16 6 C -0.42 -22.84 8.23 86.71 0.71 -22.12 16 7 H 0.08 4.41 7.06 -2.91 -0.02 4.39 16 8 C 0.07 3.96 4.80 87.30 0.42 4.38 16 9 N -0.81 -43.12 13.87 23.26 0.32 -42.79 16 10 Si 0.94 43.56 29.72 68.60 2.04 45.60 16 11 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16 12 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 13 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 14 C 0.49 23.04 7.03 86.66 0.61 23.65 16 15 O -0.59 -31.90 16.46 -3.76 -0.06 -31.96 16 16 C -0.10 -3.39 5.18 -20.09 -0.10 -3.50 16 17 C 0.00 -0.06 9.68 22.62 0.22 0.16 16 18 C 0.05 1.17 7.13 22.56 0.16 1.34 16 19 C 0.12 3.20 6.78 22.76 0.15 3.36 16 20 C 0.00 0.05 6.88 36.41 0.25 0.30 16 21 N -0.01 -0.31 4.98 -46.38 -0.23 -0.54 16 22 O -0.18 -5.72 19.15 3.51 0.07 -5.66 16 23 O -0.17 -5.51 18.73 8.82 0.17 -5.34 16 24 C -0.04 -1.10 6.88 22.53 0.16 -0.94 16 25 O -0.28 -6.26 10.45 -68.86 -0.72 -6.98 16 26 C 0.20 2.52 8.88 113.37 1.01 3.53 16 27 O -0.30 -6.07 11.41 -76.40 -0.87 -6.94 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.05 1.56 6.36 -2.39 -0.02 1.54 16 33 H 0.07 2.98 8.10 -2.39 -0.02 2.96 16 34 H 0.09 2.96 4.86 -2.38 -0.01 2.95 16 35 H 0.28 13.92 8.27 -92.71 -0.77 13.15 16 36 H 0.16 4.98 8.06 -2.91 -0.02 4.96 16 37 H 0.18 5.58 3.07 -2.91 -0.01 5.57 16 38 H 0.19 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -70.18 345.42 4.58 -65.60 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.14 Total: 8.42 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 5.67 Total: 17.46 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -1.49 Total: -63.96 kcal Atomic # 8 Polarization: -70.33 SS G_CDS: -2.78 Total: -73.11 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.04 Total: 45.60 kcal Total: -70.18 4.58 -65.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.444 kcal (2) G-P(sol) polarization free energy of solvation -70.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds