Wall clock time and date at job start Tue Mar 31 2020 21:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47039 * 12.05776 * 3 2 1 5 5 C 1.37095 * 119.99842 * 85.32030 * 4 3 2 6 6 H 1.07998 * 120.00540 * 214.20345 * 5 4 3 7 7 C 1.38956 * 120.00097 * 34.20871 * 5 4 3 8 8 N 1.31406 * 119.99973 * 24.39324 * 7 5 4 9 9 Si 1.86798 * 120.00080 * 204.39465 * 7 5 4 10 10 H 1.48500 * 109.47016 * 94.99701 * 9 7 5 11 11 H 1.48497 * 109.47459 * 214.99637 * 9 7 5 12 12 H 1.48497 * 109.47306 * 334.99942 * 9 7 5 13 13 C 1.34775 * 120.00013 * 265.32255 * 4 3 2 14 14 O 1.21291 * 119.99983 * 184.58596 * 13 4 3 15 15 C 1.50695 * 119.99985 * 4.59255 * 13 4 3 16 16 H 1.08998 * 109.47508 * 43.87082 * 15 13 4 17 17 C 1.50708 * 109.46825 * 283.87590 * 15 13 4 18 18 C 1.38453 * 120.01861 * 315.45426 * 17 15 13 19 19 F 1.35105 * 120.02261 * 359.97438 * 18 17 15 20 20 C 1.38449 * 119.96390 * 179.97438 * 18 17 15 21 21 C 1.38220 * 120.00132 * 0.02562 * 20 18 17 22 22 C 1.38210 * 120.03438 * 359.97146 * 21 20 18 23 23 C 1.38292 * 120.01907 * 135.17655 * 17 15 13 24 24 Cl 1.73598 * 120.00248 * 359.97438 * 23 17 15 25 25 N 1.46897 * 109.47223 * 163.88119 * 15 13 4 26 26 C 1.46893 * 111.00406 * 70.67425 * 25 15 13 27 27 C 1.46903 * 110.99946 * 194.62925 * 25 15 13 28 28 H 4.40646 * 5.51315 * 180.02562 * 4 1 2 29 29 H 1.09001 * 109.46800 * 252.06113 * 3 2 1 30 30 H 1.09002 * 109.46908 * 132.05480 * 3 2 1 31 31 H 0.96999 * 120.00037 * 180.02562 * 8 7 5 32 32 H 1.07997 * 120.00010 * 180.02562 * 20 18 17 33 33 H 1.08002 * 119.98343 * 179.97438 * 21 20 18 34 34 H 1.08008 * 119.97814 * 180.02562 * 22 21 20 35 35 H 1.09005 * 109.47263 * 61.25495 * 26 25 15 36 36 H 1.09001 * 109.47330 * 181.25672 * 26 25 15 37 37 H 1.08998 * 109.47351 * 301.25838 * 26 25 15 38 38 H 1.08998 * 109.47167 * 59.99918 * 27 25 15 39 39 H 1.08997 * 109.47023 * 179.97438 * 27 25 15 40 40 H 1.08995 * 109.47388 * 299.99896 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3499 -0.2885 5 6 3.2723 -1.7662 -1.5875 6 1 3.0858 -2.7980 -1.8466 7 6 3.6516 -0.8607 -2.5709 8 7 4.3261 0.2189 -2.2451 9 14 3.2026 -1.1781 -4.3561 10 1 1.9423 -0.4644 -4.6840 11 1 4.2931 -0.6863 -5.2359 12 1 3.0153 -2.6360 -4.5678 13 6 3.4497 -2.1831 0.7230 14 8 3.9325 -3.2701 0.4855 15 6 3.2015 -1.7642 2.1491 16 1 2.2188 -1.2989 2.2255 17 6 4.2587 -0.7778 2.5741 18 6 5.5883 -1.0122 2.2670 19 9 5.9388 -2.1256 1.5867 20 6 6.5585 -0.1050 2.6575 21 6 6.1997 1.0337 3.3540 22 6 4.8724 1.2677 3.6605 23 6 3.9007 0.3649 3.2660 24 17 2.2331 0.6637 3.6447 25 7 3.2538 -2.9444 3.0223 26 6 4.6278 -3.4495 3.1431 27 6 2.6840 -2.6474 4.3434 28 1 -1.0498 -0.0003 -0.0002 29 1 3.0092 0.3174 0.9777 30 1 3.0090 0.6892 -0.7631 31 1 4.5905 0.8512 -2.9315 32 1 7.5957 -0.2870 2.4179 33 1 6.9568 1.7410 3.6588 34 1 4.5930 2.1580 4.2044 35 1 5.2599 -2.6806 3.5874 36 1 4.6345 -4.3363 3.7768 37 1 5.0087 -3.7064 2.1547 38 1 1.6438 -2.3422 4.2301 39 1 2.7348 -3.5382 4.9695 40 1 3.2502 -1.8417 4.8105 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490984286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:36 Heat of formation + Delta-G solvation = 22.656206 kcal Electronic energy + Delta-G solvation = -29024.434979 eV Core-core repulsion = 24975.349317 eV Total energy + Delta-G solvation = -4049.085663 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.11951 -41.50070 -39.78538 -38.00714 -37.56783 -36.75708 -34.35695 -33.23012 -32.55837 -31.49286 -29.11492 -28.54950 -28.20887 -26.37060 -24.13891 -23.87320 -22.81335 -20.59955 -19.80925 -18.96461 -18.57649 -18.21417 -17.46830 -17.44413 -17.16711 -16.55238 -16.05873 -15.97099 -15.78516 -15.57936 -15.41122 -15.18964 -14.73909 -14.41519 -14.29397 -13.98201 -13.85568 -13.52751 -13.38784 -13.20430 -12.97795 -12.87277 -12.74435 -12.70261 -12.52319 -12.35745 -12.20504 -12.09401 -11.79015 -11.36019 -11.20292 -10.84994 -10.48163 -9.84165 -9.71970 -9.59580 -9.34001 -8.37694 -6.06956 -0.12783 -0.03243 0.90465 1.33930 1.38493 1.50185 1.79207 1.96846 2.01442 2.29550 2.34537 2.77402 2.94279 3.22043 3.30657 3.44660 3.69593 3.73648 3.83442 4.07764 4.15519 4.20913 4.32014 4.39322 4.40944 4.49332 4.60529 4.64495 4.83522 4.89549 4.95292 5.03524 5.10076 5.14584 5.18545 5.24762 5.46565 5.67260 5.79496 6.07466 6.18196 6.48138 6.79772 7.15801 7.37969 8.01922 8.64936 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012112 B = 0.005775 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.108628 B = 4847.728996 C = 5131.297051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.221 4.221 3 C 0.198 3.802 4 N -0.447 5.447 5 C -0.339 4.339 6 H 0.063 0.937 7 C 0.008 3.992 8 N -0.882 5.882 9 Si 0.976 3.024 10 H -0.265 1.265 11 H -0.272 1.272 12 H -0.275 1.275 13 C 0.465 3.535 14 O -0.586 6.586 15 C 0.119 3.881 16 H 0.110 0.890 17 C -0.157 4.157 18 C 0.101 3.899 19 F -0.136 7.136 20 C -0.155 4.155 21 C -0.058 4.058 22 C -0.115 4.115 23 C -0.012 4.012 24 Cl -0.047 7.047 25 N -0.530 5.530 26 C 0.011 3.989 27 C 0.025 3.975 28 H 0.253 0.747 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.276 0.724 32 H 0.158 0.842 33 H 0.190 0.810 34 H 0.177 0.823 35 H 0.024 0.976 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.007 7.811 15.054 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.222 4.222 3 C 0.075 3.925 4 N -0.166 5.166 5 C -0.467 4.467 6 H 0.081 0.919 7 C -0.195 4.195 8 N -0.519 5.519 9 Si 0.800 3.200 10 H -0.191 1.191 11 H -0.197 1.197 12 H -0.199 1.199 13 C 0.254 3.746 14 O -0.469 6.469 15 C 0.007 3.993 16 H 0.127 0.873 17 C -0.161 4.161 18 C 0.081 3.919 19 F -0.114 7.114 20 C -0.174 4.174 21 C -0.076 4.076 22 C -0.133 4.133 23 C -0.040 4.040 24 Cl -0.018 7.018 25 N -0.252 5.252 26 C -0.136 4.136 27 C -0.122 4.122 28 H 0.270 0.730 29 H 0.106 0.894 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.176 0.824 33 H 0.207 0.793 34 H 0.194 0.806 35 H 0.043 0.957 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.075 7.002 14.629 16.219 hybrid contribution 0.075 -0.080 -0.969 0.975 sum 0.000 6.922 13.661 15.314 Atomic orbital electron populations 1.25588 0.96388 0.98851 1.00940 1.24186 0.95650 1.01708 1.00688 1.18651 0.83794 0.87382 1.02627 1.43508 1.56056 1.12211 1.04870 1.19329 1.47403 0.96658 0.83282 0.91902 1.25999 0.93756 0.96118 1.03628 1.69929 1.32489 1.13404 1.36096 0.85186 0.78571 0.78642 0.77637 1.19055 1.19685 1.19933 1.20626 0.80817 0.86294 0.86867 1.90424 1.47307 1.24379 1.84827 1.20472 0.98059 0.89219 0.91548 0.87277 1.20073 0.94248 0.98069 1.03738 1.17868 0.93311 0.85439 0.95270 1.91582 1.92413 1.49692 1.77735 1.21626 1.00075 0.94831 1.00833 1.21483 0.96502 0.95455 0.94189 1.21528 0.91583 0.99526 1.00711 1.20742 0.87310 0.95205 1.00739 1.98371 1.15780 1.95167 1.92497 1.61996 1.21935 1.28238 1.13076 1.23017 0.87867 0.99025 1.03697 1.22523 0.99815 1.01411 0.88480 0.73033 0.89410 0.87230 0.91467 0.82428 0.79312 0.80598 0.95741 0.90657 0.90216 0.90996 0.89420 0.94911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.01 19.25 74.32 1.43 -5.58 16 2 C -0.22 -9.45 13.29 31.13 0.41 -9.04 16 3 C 0.20 9.41 5.16 84.57 0.44 9.85 16 4 N -0.45 -24.39 2.51 -645.40 -1.62 -26.01 16 5 C -0.34 -20.13 8.89 84.04 0.75 -19.38 16 6 H 0.06 4.02 7.77 -2.91 -0.02 3.99 16 7 C 0.01 0.44 4.95 84.93 0.42 0.86 16 8 N -0.88 -48.10 11.36 21.66 0.25 -47.86 16 9 Si 0.98 43.72 29.62 68.60 2.03 45.75 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 13 C 0.47 24.67 5.43 87.66 0.48 25.15 16 14 O -0.59 -35.15 13.19 -3.06 -0.04 -35.19 16 15 C 0.12 4.94 1.45 43.42 0.06 5.01 16 16 H 0.11 4.42 5.32 -2.39 -0.01 4.40 16 17 C -0.16 -5.65 2.50 -19.80 -0.05 -5.70 16 18 C 0.10 3.76 5.08 22.37 0.11 3.88 16 19 F -0.14 -6.20 11.36 44.97 0.51 -5.69 16 20 C -0.15 -4.20 10.03 22.32 0.22 -3.97 16 21 C -0.06 -1.12 10.04 22.26 0.22 -0.90 16 22 C -0.12 -2.39 9.83 22.30 0.22 -2.17 16 23 C -0.01 -0.35 4.96 22.32 0.11 -0.24 16 24 Cl -0.05 -1.23 26.46 -2.72 -0.07 -1.30 16 25 N -0.53 -20.45 4.75 -932.24 -4.43 -24.88 16 26 C 0.01 0.43 7.57 127.69 0.97 1.40 16 27 C 0.03 0.72 9.20 127.69 1.18 1.89 16 28 H 0.25 6.05 7.80 -4.43 -0.03 6.02 16 29 H 0.09 3.78 4.12 -2.39 -0.01 3.77 16 30 H 0.11 5.69 5.39 -2.39 -0.01 5.68 16 31 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 33 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.18 2.35 8.06 -2.91 -0.02 2.32 16 35 H 0.02 0.86 5.44 -2.38 -0.01 0.85 16 36 H 0.07 2.45 8.13 -2.39 -0.02 2.43 16 37 H 0.08 3.72 4.16 -2.39 -0.01 3.71 16 38 H 0.07 1.95 8.09 -2.39 -0.02 1.93 16 39 H 0.09 2.13 8.13 -2.39 -0.02 2.11 16 40 H 0.03 0.87 7.21 -2.39 -0.02 0.86 16 Total: -1.00 -75.51 342.28 4.68 -70.83 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 1.09 Total: 23.30 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 6.97 Total: 1.04 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -5.81 Total: -98.74 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -0.04 Total: -35.19 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.51 Total: -5.69 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.07 Total: -1.30 kcal Total: -75.51 4.68 -70.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490984286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.485 kcal (2) G-P(sol) polarization free energy of solvation -75.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds