Wall clock time and date at job start Tue Mar 31 2020 20:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48504 * 109.46789 * 240.00168 * 3 2 1 5 5 H 1.48491 * 109.47329 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46872 * 120.00848 * 3 2 1 7 7 C 1.38813 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99517 * 186.81802 * 7 2 1 9 9 N 1.36937 * 119.99939 * 6.81608 * 7 2 1 10 10 C 1.46968 * 120.59249 * 214.20562 * 9 7 2 11 11 C 1.53366 * 108.63758 * 235.20775 * 10 9 7 12 12 N 1.46966 * 108.63316 * 310.57493 * 11 10 9 13 13 C 1.34774 * 120.59525 * 235.20634 * 12 11 10 14 14 O 1.21703 * 120.00057 * 354.74786 * 13 12 11 15 15 C 1.46348 * 120.00066 * 174.75454 * 13 12 11 16 16 C 1.34888 * 119.99868 * 172.83403 * 15 13 12 17 17 C 1.47105 * 120.00110 * 348.89935 * 16 15 13 18 18 C 1.39909 * 120.13909 * 132.13215 * 17 16 15 19 19 C 1.37785 * 119.88066 * 179.97438 * 18 17 16 20 20 C 1.38682 * 120.15292 * 0.02562 * 19 18 17 21 21 F 1.35108 * 119.85498 * 179.97438 * 20 19 18 22 22 C 1.38767 * 120.28259 * 359.97438 * 20 19 18 23 23 Cl 1.73595 * 119.93819 * 180.02562 * 22 20 19 24 24 C 1.37909 * 120.11952 * 359.74251 * 22 20 19 25 25 C 1.46965 * 118.81119 * 55.47979 * 12 11 10 26 26 C 1.46958 * 120.59473 * 34.18691 * 9 7 2 27 27 H 0.96991 * 120.00420 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.60825 * 115.45802 * 10 9 7 29 29 H 1.09006 * 109.75167 * 355.03643 * 10 9 7 30 30 H 1.08993 * 109.61094 * 190.83408 * 11 10 9 31 31 H 1.08995 * 109.61045 * 70.31542 * 11 10 9 32 32 H 1.08004 * 119.99666 * 352.82803 * 15 13 12 33 33 H 1.08002 * 119.99784 * 169.17659 * 16 15 13 34 34 H 1.08003 * 120.06440 * 359.95603 * 18 17 16 35 35 H 1.07996 * 119.92501 * 179.97438 * 19 18 17 36 36 H 1.08006 * 120.08045 * 180.25515 * 24 22 20 37 37 H 1.08998 * 109.61151 * 64.26556 * 25 12 11 38 38 H 1.09002 * 109.61060 * 184.78023 * 25 12 11 39 39 H 1.09000 * 109.61214 * 244.53768 * 26 9 7 40 40 H 1.09003 * 109.61073 * 5.05046 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0846 -1.2054 0.1105 9 7 1.3329 -2.3838 -0.1418 10 6 1.7927 -3.5968 0.5490 11 6 1.9965 -4.7056 -0.4907 12 7 0.7964 -4.7835 -1.3355 13 6 0.1297 -5.9465 -1.4746 14 8 0.5723 -6.9649 -0.9765 15 6 -1.1264 -5.9847 -2.2246 16 6 -1.7190 -7.1675 -2.4877 17 6 -0.9944 -8.4240 -2.2422 18 6 -1.6153 -9.4692 -1.5497 19 6 -0.9319 -10.6440 -1.3232 20 6 0.3694 -10.7920 -1.7794 21 9 1.0341 -11.9463 -1.5534 22 6 0.9915 -9.7595 -2.4669 23 17 2.6204 -9.9547 -3.0346 24 6 0.3161 -8.5810 -2.7051 25 6 0.3399 -3.5719 -2.0309 26 6 0.1329 -2.4616 -0.9866 27 1 -0.4850 0.8399 0.0004 28 1 1.0432 -3.9101 1.2759 29 1 2.7349 -3.3956 1.0588 30 1 2.1497 -5.6584 0.0158 31 1 2.8640 -4.4730 -1.1083 32 1 -1.5789 -5.0659 -2.5672 33 1 -2.7238 -7.1920 -2.8829 34 1 -2.6284 -9.3554 -1.1931 35 1 -1.4103 -11.4510 -0.7884 36 1 0.7995 -7.7794 -3.2439 37 1 1.0922 -3.2605 -2.7555 38 1 -0.6012 -3.7758 -2.5416 39 1 -0.7348 -2.6942 -0.3692 40 1 -0.0203 -1.5087 -1.4932 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491924528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:44 Heat of formation + Delta-G solvation = 0.904897 kcal Electronic energy + Delta-G solvation = -26571.682950 eV Core-core repulsion = 22521.654079 eV Total energy + Delta-G solvation = -4050.028870 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.03482 -40.11368 -38.87486 -36.90629 -36.53574 -33.91762 -33.78309 -31.47726 -31.07477 -30.25310 -29.35474 -27.01437 -24.54673 -23.55592 -23.12063 -22.70646 -21.58250 -19.89198 -18.46634 -17.94234 -17.56403 -16.67164 -16.27187 -16.00050 -15.81660 -15.21548 -14.88694 -14.73886 -14.24889 -14.06602 -13.95500 -13.63008 -13.52406 -13.36694 -13.29874 -12.99520 -12.95405 -12.39091 -12.09357 -11.73896 -11.59177 -11.50593 -11.23733 -11.00050 -10.89524 -10.76676 -10.55549 -10.26817 -10.17418 -9.93834 -9.86877 -9.50413 -8.92343 -8.62649 -8.24932 -8.23672 -6.67084 -5.90290 -3.43351 0.50910 1.01318 1.54341 1.97561 3.30998 3.35784 3.36797 3.37215 3.43314 3.54252 3.98891 4.38834 4.45726 4.50440 4.75424 4.90256 5.02416 5.18031 5.29156 5.38169 5.41098 5.61527 5.74350 5.78809 5.82692 5.84625 5.91129 5.96252 6.07392 6.13802 6.22564 6.27809 6.33332 6.41752 6.57684 6.76344 6.89826 7.18212 7.44912 7.67334 7.87396 8.36064 8.51079 9.09260 9.68235 10.28093 11.16842 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.023318 B = 0.002638 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.487225 B =10612.134655 C =11226.263920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.008 3.992 3 Si 0.908 3.092 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.132 3.868 11 C 0.096 3.904 12 N -0.586 5.586 13 C 0.529 3.471 14 O -0.548 6.548 15 C -0.185 4.185 16 C -0.049 4.049 17 C -0.048 4.048 18 C -0.073 4.073 19 C -0.150 4.150 20 C 0.107 3.893 21 F -0.132 7.132 22 C -0.075 4.075 23 Cl -0.057 7.057 24 C -0.012 4.012 25 C 0.075 3.925 26 C 0.159 3.841 27 H 0.257 0.743 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.024 0.976 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.752 -17.448 -7.554 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.737 3.263 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.388 4.388 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.005 3.995 11 C -0.028 4.028 12 N -0.317 5.317 13 C 0.319 3.681 14 O -0.430 6.430 15 C -0.205 4.205 16 C -0.069 4.069 17 C -0.049 4.049 18 C -0.092 4.092 19 C -0.169 4.169 20 C 0.087 3.913 21 F -0.111 7.111 22 C -0.103 4.103 23 Cl -0.028 7.028 24 C -0.031 4.031 25 C -0.049 4.049 26 C 0.032 3.968 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.151 0.849 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.042 0.958 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.420 -17.824 -7.307 19.764 hybrid contribution 0.662 0.959 0.115 1.171 sum -3.758 -16.865 -7.192 18.715 Atomic orbital electron populations 1.69900 1.05334 1.25869 1.53808 1.25269 0.95494 0.98535 0.99766 0.86302 0.78845 0.82925 0.78239 1.20839 1.21518 1.20757 1.19140 0.90333 0.83350 1.45947 0.91763 1.43903 1.30467 1.05534 1.51491 1.21313 0.98554 0.87227 0.92426 1.22214 0.86123 1.00691 0.93780 1.48046 1.27771 1.09378 1.46505 1.18410 0.84647 0.83359 0.81696 1.90832 1.68851 1.32441 1.50852 1.23374 0.97231 0.99017 1.00928 1.22221 0.98216 0.90461 0.96014 1.18821 0.93295 0.94030 0.98748 1.21100 1.00040 0.91309 0.96714 1.20892 0.92700 0.99940 1.03385 1.17506 0.91302 0.82156 1.00307 1.91513 1.80426 1.46417 1.92708 1.20708 0.88360 0.96271 1.04927 1.98373 1.19282 1.97512 1.87669 1.20881 0.92301 0.93812 0.96136 1.22905 0.98888 0.86247 0.96889 1.21289 0.88663 0.96289 0.90554 0.93335 0.95927 0.91549 0.89960 0.91984 0.84134 0.84119 0.84470 0.84088 0.84865 0.91690 0.90819 0.95796 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.83 11.01 55.49 0.61 -24.22 16 2 C 0.01 0.22 5.12 -17.43 -0.09 0.13 16 3 Si 0.91 20.77 29.56 -169.99 -5.02 15.74 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.26 -6.75 9.56 -15.06 -0.14 -6.89 16 8 H 0.06 1.65 7.84 -52.48 -0.41 1.24 16 9 N -0.59 -14.11 2.95 -171.76 -0.51 -14.61 16 10 C 0.13 2.73 6.67 -3.60 -0.02 2.70 16 11 C 0.10 1.74 6.58 -3.60 -0.02 1.71 16 12 N -0.59 -10.11 2.94 -173.88 -0.51 -10.62 16 13 C 0.53 8.51 6.82 -13.00 -0.09 8.42 16 14 O -0.55 -9.88 11.92 5.19 0.06 -9.82 16 15 C -0.19 -2.25 9.21 -37.51 -0.35 -2.59 16 16 C -0.05 -0.50 9.78 -37.17 -0.36 -0.86 16 17 C -0.05 -0.56 4.33 -105.06 -0.46 -1.02 16 18 C -0.07 -0.74 9.79 -39.12 -0.38 -1.13 16 19 C -0.15 -1.58 10.01 -39.58 -0.40 -1.98 16 20 C 0.11 1.37 7.28 -39.22 -0.29 1.08 16 21 F -0.13 -1.73 16.82 2.25 0.04 -1.69 16 22 C -0.08 -1.01 6.32 -39.51 -0.25 -1.26 16 23 Cl -0.06 -0.76 28.60 -51.86 -1.48 -2.24 16 24 C -0.01 -0.16 6.56 -39.09 -0.26 -0.42 16 25 C 0.07 1.26 6.54 -3.36 -0.02 1.24 16 26 C 0.16 3.46 5.45 -3.37 -0.02 3.44 16 27 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 1.32 7.94 -51.93 -0.41 0.91 16 30 H 0.08 1.47 7.02 -51.93 -0.36 1.11 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.14 1.45 5.93 -52.48 -0.31 1.14 16 33 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 35 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.13 1.79 7.46 -52.48 -0.39 1.39 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 1.00 5.32 -51.93 -0.28 0.72 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.10 2.44 6.11 -51.93 -0.32 2.12 16 LS Contribution 347.81 15.07 5.24 5.24 Total: -1.00 -30.16 347.81 -9.30 -39.46 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.58 Total: 0.19 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -3.14 Total: 2.58 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.41 Total: -49.46 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.06 Total: -9.82 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.48 Total: -2.24 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.16 -9.30 -39.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491924528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.367 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds