Wall clock time and date at job start Tue Mar 31 2020 20:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48504 * 109.46789 * 240.00168 * 3 2 1 5 5 H 1.48491 * 109.47329 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46872 * 120.00848 * 3 2 1 7 7 C 1.38813 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99517 * 186.81802 * 7 2 1 9 9 N 1.36937 * 119.99939 * 6.81608 * 7 2 1 10 10 C 1.46968 * 120.59249 * 214.20562 * 9 7 2 11 11 C 1.53366 * 108.63758 * 235.20775 * 10 9 7 12 12 N 1.46966 * 108.63316 * 310.57493 * 11 10 9 13 13 C 1.34774 * 120.59525 * 235.20634 * 12 11 10 14 14 O 1.21703 * 120.00057 * 354.74786 * 13 12 11 15 15 C 1.46348 * 120.00066 * 174.75454 * 13 12 11 16 16 C 1.34888 * 119.99868 * 172.83403 * 15 13 12 17 17 C 1.47105 * 120.00110 * 348.89935 * 16 15 13 18 18 C 1.39909 * 120.13909 * 132.13215 * 17 16 15 19 19 C 1.37785 * 119.88066 * 179.97438 * 18 17 16 20 20 C 1.38682 * 120.15292 * 0.02562 * 19 18 17 21 21 F 1.35108 * 119.85498 * 179.97438 * 20 19 18 22 22 C 1.38767 * 120.28259 * 359.97438 * 20 19 18 23 23 Cl 1.73595 * 119.93819 * 180.02562 * 22 20 19 24 24 C 1.37909 * 120.11952 * 359.74251 * 22 20 19 25 25 C 1.46965 * 118.81119 * 55.47979 * 12 11 10 26 26 C 1.46958 * 120.59473 * 34.18691 * 9 7 2 27 27 H 0.96991 * 120.00420 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.60825 * 115.45802 * 10 9 7 29 29 H 1.09006 * 109.75167 * 355.03643 * 10 9 7 30 30 H 1.08993 * 109.61094 * 190.83408 * 11 10 9 31 31 H 1.08995 * 109.61045 * 70.31542 * 11 10 9 32 32 H 1.08004 * 119.99666 * 352.82803 * 15 13 12 33 33 H 1.08002 * 119.99784 * 169.17659 * 16 15 13 34 34 H 1.08003 * 120.06440 * 359.95603 * 18 17 16 35 35 H 1.07996 * 119.92501 * 179.97438 * 19 18 17 36 36 H 1.08006 * 120.08045 * 180.25515 * 24 22 20 37 37 H 1.08998 * 109.61151 * 64.26556 * 25 12 11 38 38 H 1.09002 * 109.61060 * 184.78023 * 25 12 11 39 39 H 1.09000 * 109.61214 * 244.53768 * 26 9 7 40 40 H 1.09003 * 109.61073 * 5.05046 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0846 -1.2054 0.1105 9 7 1.3329 -2.3838 -0.1418 10 6 1.7927 -3.5968 0.5490 11 6 1.9965 -4.7056 -0.4907 12 7 0.7964 -4.7835 -1.3355 13 6 0.1297 -5.9465 -1.4746 14 8 0.5723 -6.9649 -0.9765 15 6 -1.1264 -5.9847 -2.2246 16 6 -1.7190 -7.1675 -2.4877 17 6 -0.9944 -8.4240 -2.2422 18 6 -1.6153 -9.4692 -1.5497 19 6 -0.9319 -10.6440 -1.3232 20 6 0.3694 -10.7920 -1.7794 21 9 1.0341 -11.9463 -1.5534 22 6 0.9915 -9.7595 -2.4669 23 17 2.6204 -9.9547 -3.0346 24 6 0.3161 -8.5810 -2.7051 25 6 0.3399 -3.5719 -2.0309 26 6 0.1329 -2.4616 -0.9866 27 1 -0.4850 0.8399 0.0004 28 1 1.0432 -3.9101 1.2759 29 1 2.7349 -3.3956 1.0588 30 1 2.1497 -5.6584 0.0158 31 1 2.8640 -4.4730 -1.1083 32 1 -1.5789 -5.0659 -2.5672 33 1 -2.7238 -7.1920 -2.8829 34 1 -2.6284 -9.3554 -1.1931 35 1 -1.4103 -11.4510 -0.7884 36 1 0.7995 -7.7794 -3.2439 37 1 1.0922 -3.2605 -2.7555 38 1 -0.6012 -3.7758 -2.5416 39 1 -0.7348 -2.6942 -0.3692 40 1 -0.0203 -1.5087 -1.4932 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491924528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:44 Heat of formation + Delta-G solvation = -14.755681 kcal Electronic energy + Delta-G solvation = -26572.362043 eV Core-core repulsion = 22521.654079 eV Total energy + Delta-G solvation = -4050.707964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.99862 -41.27611 -39.93120 -38.35983 -37.56847 -35.56551 -34.74627 -33.21891 -31.96193 -31.85128 -30.36684 -28.64982 -25.93743 -24.99703 -24.26182 -23.89645 -22.82655 -21.30173 -19.76871 -19.09657 -18.63561 -17.99109 -17.54183 -17.23692 -16.79053 -16.70650 -16.29051 -16.02463 -15.50023 -15.30953 -15.24606 -14.93832 -14.87241 -14.76716 -14.50582 -14.07511 -14.00246 -13.75870 -13.32815 -13.11599 -12.92525 -12.71713 -12.54976 -12.45209 -12.41600 -12.24326 -12.00087 -11.98129 -11.86243 -11.66674 -10.87303 -10.68758 -10.55388 -9.92642 -9.63626 -9.18838 -8.55683 -7.87816 -5.44981 -0.39853 0.12315 0.64172 1.00974 1.49594 1.50042 1.57010 2.13744 2.32624 2.50594 2.54832 3.08458 3.28024 3.56637 3.62720 3.66912 3.76237 4.10240 4.15845 4.25443 4.30061 4.35394 4.51974 4.54393 4.63306 4.70174 4.79670 4.81126 4.83798 4.91051 5.03763 5.04977 5.11854 5.26248 5.32429 5.44664 5.61236 5.62099 5.69881 5.75228 6.40260 6.58619 7.13836 7.26352 7.78071 8.33822 9.15728 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.023318 B = 0.002638 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.487225 B =10612.134655 C =11226.263920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.039 4.039 3 Si 0.970 3.030 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.271 4.271 8 H 0.063 0.937 9 N -0.610 5.610 10 C 0.134 3.866 11 C 0.109 3.891 12 N -0.598 5.598 13 C 0.526 3.474 14 O -0.572 6.572 15 C -0.212 4.212 16 C -0.014 4.014 17 C -0.064 4.064 18 C -0.065 4.065 19 C -0.145 4.145 20 C 0.088 3.912 21 F -0.139 7.139 22 C -0.094 4.094 23 Cl -0.068 7.068 24 C -0.026 4.026 25 C 0.093 3.907 26 C 0.164 3.836 27 H 0.253 0.747 28 H 0.008 0.992 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.162 0.838 33 H 0.189 0.811 34 H 0.175 0.825 35 H 0.170 0.830 36 H 0.123 0.877 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.002 0.998 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.481 -18.345 -8.304 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.236 4.236 3 Si 0.797 3.203 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.401 4.401 8 H 0.081 0.919 9 N -0.334 5.334 10 C 0.007 3.993 11 C -0.016 4.016 12 N -0.328 5.328 13 C 0.319 3.681 14 O -0.455 6.455 15 C -0.232 4.232 16 C -0.033 4.033 17 C -0.065 4.065 18 C -0.083 4.083 19 C -0.164 4.164 20 C 0.068 3.932 21 F -0.118 7.118 22 C -0.121 4.121 23 Cl -0.039 7.039 24 C -0.045 4.045 25 C -0.031 4.031 26 C 0.038 3.962 27 H 0.062 0.938 28 H 0.026 0.974 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.179 0.821 33 H 0.206 0.794 34 H 0.192 0.808 35 H 0.187 0.813 36 H 0.141 0.859 37 H 0.083 0.917 38 H 0.131 0.869 39 H 0.020 0.980 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.146 -18.751 -8.070 21.319 hybrid contribution 1.164 1.089 0.395 1.642 sum -4.982 -17.661 -7.675 19.891 Atomic orbital electron populations 1.70057 1.06493 1.26170 1.54902 1.25952 0.96255 1.01377 0.99968 0.85325 0.77561 0.79104 0.78274 1.20104 1.21786 1.20586 1.19424 0.90628 0.84531 1.45478 0.91905 1.44169 1.30824 1.05799 1.52561 1.21335 0.97964 0.87071 0.92891 1.21916 0.87020 0.99351 0.93295 1.48091 1.27796 1.10040 1.46910 1.19087 0.85368 0.82321 0.81337 1.90825 1.69707 1.33006 1.51918 1.23313 0.95900 1.00888 1.03088 1.22698 0.99257 0.88684 0.92702 1.19175 0.92932 0.95399 0.98964 1.21538 1.01383 0.90198 0.95158 1.21288 0.91643 1.01000 1.02427 1.17823 0.92357 0.81921 1.01117 1.91490 1.80770 1.46710 1.92839 1.20907 0.88222 0.97073 1.05943 1.98359 1.20108 1.97568 1.87856 1.20897 0.93201 0.93453 0.96919 1.22661 1.00895 0.84476 0.95079 1.21123 0.87255 0.96909 0.90895 0.93761 0.97375 0.91432 0.89866 0.91854 0.82090 0.79416 0.80776 0.81299 0.85915 0.91725 0.86858 0.97999 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.99 11.01 21.65 0.24 -51.75 16 2 C -0.04 -2.09 5.12 84.86 0.43 -1.66 16 3 Si 0.97 42.99 29.56 68.60 2.03 45.01 16 4 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.27 -14.34 9.56 84.03 0.80 -13.54 16 8 H 0.06 3.27 7.84 -2.91 -0.02 3.25 16 9 N -0.61 -29.60 2.95 -697.33 -2.06 -31.66 16 10 C 0.13 5.64 6.67 86.41 0.58 6.21 16 11 C 0.11 3.94 6.58 86.41 0.57 4.51 16 12 N -0.60 -20.11 2.94 -822.26 -2.42 -22.53 16 13 C 0.53 16.14 6.82 86.35 0.59 16.72 16 14 O -0.57 -20.06 11.92 -4.36 -0.05 -20.11 16 15 C -0.21 -4.46 9.21 23.61 0.22 -4.24 16 16 C -0.01 -0.22 9.78 23.83 0.23 0.01 16 17 C -0.06 -1.30 4.33 -20.15 -0.09 -1.39 16 18 C -0.06 -1.06 9.79 22.57 0.22 -0.83 16 19 C -0.14 -2.63 10.01 22.27 0.22 -2.41 16 20 C 0.09 2.14 7.28 22.50 0.16 2.30 16 21 F -0.14 -3.58 16.82 44.97 0.76 -2.82 16 22 C -0.09 -2.50 6.32 22.32 0.14 -2.36 16 23 Cl -0.07 -1.82 28.60 -2.72 -0.08 -1.89 16 24 C -0.03 -0.65 6.56 22.59 0.15 -0.50 16 25 C 0.09 3.03 6.54 86.57 0.57 3.60 16 26 C 0.16 7.25 5.45 86.57 0.47 7.72 16 27 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 28 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.07 2.75 7.94 -2.38 -0.02 2.73 16 30 H 0.08 2.99 7.02 -2.39 -0.02 2.97 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.16 2.67 5.93 -2.91 -0.02 2.66 16 33 H 0.19 1.22 8.06 -2.91 -0.02 1.19 16 34 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.12 3.26 7.46 -2.91 -0.02 3.24 16 37 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.11 2.79 5.32 -2.39 -0.01 2.77 16 39 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.07 3.70 6.11 -2.39 -0.01 3.68 16 Total: -1.00 -67.50 347.81 4.76 -62.74 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 1.08 Total: 8.86 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 5.27 Total: 14.15 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -4.24 Total: -105.94 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.05 Total: -20.11 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.76 Total: -2.82 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.08 Total: -1.89 kcal Total: -67.50 4.76 -62.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491924528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.985 kcal (2) G-P(sol) polarization free energy of solvation -67.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds