Wall clock time and date at job start Tue Mar 31 2020 20:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86807 * 120.00309 * 2 1 4 4 H 1.48498 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46652 * 300.00000 * 3 2 1 6 6 H 1.48496 * 109.47137 * 59.99497 * 3 2 1 7 7 C 1.38952 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99815 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99813 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00160 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99932 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00572 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47731 * 179.97438 * 12 10 9 14 14 C 1.34771 * 120.00471 * 179.97438 * 13 12 10 15 15 O 1.21586 * 119.99555 * 0.02562 * 14 13 12 16 16 C 1.47608 * 120.00279 * 180.02562 * 14 13 12 17 17 C 1.40167 * 119.93491 * 0.02912 * 16 14 13 18 18 C 1.36185 * 120.51847 * 180.02562 * 17 16 14 19 19 C 1.40008 * 120.08115 * 359.97438 * 18 17 16 20 20 N 1.35554 * 133.40758 * 179.67338 * 19 18 17 21 21 C 1.30220 * 109.70949 * 179.88046 * 20 19 18 22 22 C 1.50696 * 124.92975 * 180.12259 * 21 20 19 23 23 F 1.39899 * 109.47168 * 120.32874 * 22 21 20 24 24 F 1.39897 * 109.47287 * 240.33201 * 22 21 20 25 25 N 1.35855 * 110.14782 * 0.41278 * 21 20 19 26 26 H 0.96998 * 126.37137 * 179.74663 * 25 21 20 27 27 C 1.38188 * 107.27034 * 359.74617 * 25 21 20 28 28 C 1.38412 * 134.02271 * 179.97438 * 27 25 21 29 29 H 0.97002 * 119.99750 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00079 * 0.02562 * 9 7 2 31 31 H 1.09010 * 109.46589 * 60.00261 * 12 10 9 32 32 H 1.08998 * 109.47245 * 300.00782 * 12 10 9 33 33 H 0.97001 * 119.99585 * 0.02562 * 13 12 10 34 34 H 1.08003 * 119.74369 * 0.02562 * 17 16 14 35 35 H 1.08006 * 119.96033 * 180.02562 * 18 17 16 36 36 H 1.09004 * 109.46876 * 0.33083 * 22 21 20 37 37 H 1.07998 * 120.21259 * 0.05592 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0011 13 7 2.1956 -5.9765 0.0004 14 6 1.7464 -7.2472 0.0013 15 8 0.5510 -7.4692 0.0022 16 6 2.7055 -8.3691 0.0011 17 6 4.0833 -8.1115 0.0006 18 6 4.9787 -9.1376 -0.0001 19 6 4.5273 -10.4629 0.0002 20 7 5.1592 -11.6622 -0.0059 21 6 4.2793 -12.6222 0.0003 22 6 4.6071 -14.0930 -0.0010 23 9 4.0657 -14.6925 1.1412 24 9 4.0640 -14.6909 -1.1433 25 7 3.0229 -12.1054 0.0015 26 1 2.1938 -12.6089 0.0023 27 6 3.1454 -10.7289 0.0016 28 6 2.2394 -9.6826 0.0022 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3906 -0.0002 31 1 0.6167 -4.9208 -0.8887 32 1 0.6173 -4.9205 0.8913 33 1 3.1493 -5.7993 0.0000 34 1 4.4376 -7.0913 0.0008 35 1 6.0384 -8.9288 0.0000 36 1 5.6892 -14.2241 -0.0020 37 1 1.1781 -9.8827 0.0036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553307698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:05 Heat of formation + Delta-G solvation = -99.723430 kcal Electronic energy + Delta-G solvation = -26913.090667 eV Core-core repulsion = 22326.821507 eV Total energy + Delta-G solvation = -4586.269161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.80128 -47.80204 -42.70892 -39.92544 -38.29501 -37.16045 -34.59617 -33.85767 -33.73042 -31.46677 -31.12803 -30.50925 -28.46513 -26.93430 -24.66698 -23.41586 -22.87234 -21.83279 -20.63418 -19.69637 -18.91901 -18.52167 -18.21667 -18.08325 -17.76774 -17.02894 -16.31869 -15.99812 -15.78508 -15.43501 -15.30945 -14.65410 -14.64958 -14.58749 -14.28541 -14.14235 -14.09436 -13.92903 -13.68034 -13.42107 -13.11118 -12.32351 -12.26754 -12.26325 -11.94462 -11.87629 -11.66625 -11.31749 -11.16827 -10.66911 -10.43376 -10.35897 -10.00412 -9.68416 -9.06111 -8.89033 -8.68811 -8.61483 -8.14107 -6.55049 -3.97109 0.11521 1.00648 1.84587 1.98060 2.59585 2.85339 3.07992 3.17928 3.22134 3.28987 3.36959 3.61732 3.70449 3.87725 4.07706 4.09678 4.19088 4.49494 4.62807 4.77104 4.81096 4.86542 4.92333 5.13527 5.17823 5.63471 5.77218 5.87099 5.89152 5.97667 6.00083 6.02023 6.28700 6.54095 6.59588 7.09713 7.43113 7.66245 7.88071 8.26989 8.40935 9.00968 9.35010 9.82345 10.61760 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.040304 B = 0.001737 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.546787 B =16112.872120 C =16627.623310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.107 0.893 9 N -0.548 5.548 10 C 0.427 3.573 11 O -0.597 6.597 12 C 0.108 3.892 13 N -0.698 5.698 14 C 0.557 3.443 15 O -0.544 6.544 16 C -0.098 4.098 17 C -0.093 4.093 18 C -0.060 4.060 19 C 0.064 3.936 20 N -0.452 5.452 21 C 0.207 3.793 22 C 0.359 3.641 23 F -0.187 7.187 24 F -0.187 7.187 25 N -0.573 5.573 26 H 0.430 0.570 27 C 0.051 3.949 28 C -0.046 4.046 29 H 0.274 0.726 30 H 0.396 0.604 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.412 0.588 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.156 0.844 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.429 -25.942 0.009 26.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.125 0.875 9 N -0.182 5.182 10 C 0.213 3.787 11 O -0.484 6.484 12 C -0.019 4.019 13 N -0.352 5.352 14 C 0.344 3.656 15 O -0.424 6.424 16 C -0.103 4.103 17 C -0.114 4.114 18 C -0.080 4.080 19 C -0.056 4.056 20 N -0.173 5.173 21 C -0.061 4.061 22 C 0.303 3.697 23 F -0.168 7.168 24 F -0.168 7.168 25 N -0.184 5.184 26 H 0.270 0.730 27 C -0.059 4.059 28 C -0.068 4.068 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.251 0.749 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.173 0.827 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.126 -25.966 0.002 26.926 hybrid contribution -1.273 0.708 0.004 1.456 sum 5.853 -25.258 0.006 25.927 Atomic orbital electron populations 1.69622 1.06029 1.28479 1.49242 1.25341 0.95677 0.99989 0.96732 0.85750 0.79696 0.80760 0.77840 1.19095 1.20602 1.20607 1.19787 0.93519 0.81939 1.48198 0.87544 1.41798 1.09513 1.04480 1.62432 1.19701 0.88292 0.84952 0.85799 1.90496 1.13661 1.86791 1.57475 1.21009 0.91792 0.85590 1.03545 1.45605 1.11888 1.04422 1.73246 1.17959 0.87876 0.82659 0.77152 1.90778 1.16004 1.84905 1.50669 1.19694 0.93672 0.92696 1.04244 1.20968 0.91461 1.00105 0.98849 1.19968 1.00841 0.87858 0.99296 1.19125 0.88902 0.92852 1.04751 1.70195 1.31110 0.97104 1.18935 1.23708 0.81292 0.96617 1.04528 1.19699 0.98238 0.80046 0.71730 1.93084 1.88686 1.84262 1.50750 1.93084 1.88625 1.84329 1.50748 1.42753 1.09150 1.05535 1.60987 0.72979 1.18732 0.96804 0.83358 1.06958 1.20014 0.99272 0.88791 0.98735 0.91603 0.77008 0.89530 0.89521 0.74850 0.83805 0.84010 0.82710 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.48 13.05 55.50 0.72 -22.75 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.20 29.55 -169.99 -5.02 15.18 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.31 -8.12 9.68 -14.94 -0.14 -8.26 16 8 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.22 5.29 -10.97 -0.06 -13.28 16 10 C 0.43 9.45 7.85 -10.99 -0.09 9.36 16 11 O -0.60 -14.72 15.24 5.55 0.08 -14.64 16 12 C 0.11 1.90 6.15 -5.20 -0.03 1.87 16 13 N -0.70 -11.08 5.48 -62.51 -0.34 -11.42 16 14 C 0.56 8.52 7.76 -12.44 -0.10 8.42 16 15 O -0.54 -9.73 16.33 5.29 0.09 -9.64 16 16 C -0.10 -1.22 5.88 -104.93 -0.62 -1.84 16 17 C -0.09 -1.00 9.46 -39.60 -0.37 -1.38 16 18 C -0.06 -0.62 10.03 -39.66 -0.40 -1.02 16 19 C 0.06 0.72 7.23 -84.62 -0.61 0.11 16 20 N -0.45 -4.84 11.26 -8.19 -0.09 -4.93 16 21 C 0.21 1.75 7.51 -154.90 -1.16 0.59 16 22 C 0.36 1.95 5.86 36.00 0.21 2.16 16 23 F -0.19 -1.20 17.32 2.25 0.04 -1.16 16 24 F -0.19 -1.20 17.32 2.25 0.04 -1.16 16 25 N -0.57 -4.71 6.23 -8.03 -0.05 -4.76 16 26 H 0.43 2.31 8.96 -40.82 -0.37 1.95 16 27 C 0.05 0.55 7.29 -84.00 -0.61 -0.07 16 28 C -0.05 -0.52 9.61 -39.10 -0.38 -0.90 16 29 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.40 9.19 7.90 -40.82 -0.32 8.87 16 31 H 0.09 1.45 8.14 -51.92 -0.42 1.03 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.41 6.29 5.44 -40.82 -0.22 6.07 16 34 H 0.14 1.40 6.36 -52.48 -0.33 1.07 16 35 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 36 H 0.16 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.14 1.52 7.64 -52.49 -0.40 1.12 16 LS Contribution 342.45 15.07 5.16 5.16 Total: -1.00 -32.79 342.45 -6.67 -39.47 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -2.85 Total: 14.32 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: -4.40 Total: 9.61 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.18 Total: -57.14 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: 0.17 Total: -24.28 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.08 Total: -2.32 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.79 -6.67 -39.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553307698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.258 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds