Wall clock time and date at job start Tue Mar 31 2020 20:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86807 * 120.00309 * 2 1 4 4 H 1.48498 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46652 * 300.00000 * 3 2 1 6 6 H 1.48496 * 109.47137 * 59.99497 * 3 2 1 7 7 C 1.38952 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99815 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99813 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00160 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99932 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00572 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47731 * 179.97438 * 12 10 9 14 14 C 1.34771 * 120.00471 * 179.97438 * 13 12 10 15 15 O 1.21586 * 119.99555 * 0.02562 * 14 13 12 16 16 C 1.47608 * 120.00279 * 180.02562 * 14 13 12 17 17 C 1.40167 * 119.93491 * 0.02912 * 16 14 13 18 18 C 1.36185 * 120.51847 * 180.02562 * 17 16 14 19 19 C 1.40008 * 120.08115 * 359.97438 * 18 17 16 20 20 N 1.35554 * 133.40758 * 179.67338 * 19 18 17 21 21 C 1.30220 * 109.70949 * 179.88046 * 20 19 18 22 22 C 1.50696 * 124.92975 * 180.12259 * 21 20 19 23 23 F 1.39899 * 109.47168 * 120.32874 * 22 21 20 24 24 F 1.39897 * 109.47287 * 240.33201 * 22 21 20 25 25 N 1.35855 * 110.14782 * 0.41278 * 21 20 19 26 26 H 0.96998 * 126.37137 * 179.74663 * 25 21 20 27 27 C 1.38188 * 107.27034 * 359.74617 * 25 21 20 28 28 C 1.38412 * 134.02271 * 179.97438 * 27 25 21 29 29 H 0.97002 * 119.99750 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00079 * 0.02562 * 9 7 2 31 31 H 1.09010 * 109.46589 * 60.00261 * 12 10 9 32 32 H 1.08998 * 109.47245 * 300.00782 * 12 10 9 33 33 H 0.97001 * 119.99585 * 0.02562 * 13 12 10 34 34 H 1.08003 * 119.74369 * 0.02562 * 17 16 14 35 35 H 1.08006 * 119.96033 * 180.02562 * 18 17 16 36 36 H 1.09004 * 109.46876 * 0.33083 * 22 21 20 37 37 H 1.07998 * 120.21259 * 0.05592 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0011 13 7 2.1956 -5.9765 0.0004 14 6 1.7464 -7.2472 0.0013 15 8 0.5510 -7.4692 0.0022 16 6 2.7055 -8.3691 0.0011 17 6 4.0833 -8.1115 0.0006 18 6 4.9787 -9.1376 -0.0001 19 6 4.5273 -10.4629 0.0002 20 7 5.1592 -11.6622 -0.0059 21 6 4.2793 -12.6222 0.0003 22 6 4.6071 -14.0930 -0.0010 23 9 4.0657 -14.6925 1.1412 24 9 4.0640 -14.6909 -1.1433 25 7 3.0229 -12.1054 0.0015 26 1 2.1938 -12.6089 0.0023 27 6 3.1454 -10.7289 0.0016 28 6 2.2394 -9.6826 0.0022 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3906 -0.0002 31 1 0.6167 -4.9208 -0.8887 32 1 0.6173 -4.9205 0.8913 33 1 3.1493 -5.7993 0.0000 34 1 4.4376 -7.0913 0.0008 35 1 6.0384 -8.9288 0.0000 36 1 5.6892 -14.2241 -0.0020 37 1 1.1781 -9.8827 0.0036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000553307698.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:04 Heat of formation + Delta-G solvation = -123.385863 kcal Electronic energy + Delta-G solvation = -26914.116747 eV Core-core repulsion = 22326.821507 eV Total energy + Delta-G solvation = -4587.295241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.27710 -48.28051 -43.47064 -41.19699 -39.99699 -38.12043 -36.27987 -35.40490 -34.56452 -33.37418 -31.98224 -31.33908 -29.64686 -27.98599 -26.38691 -24.39498 -23.69721 -22.51996 -21.74386 -21.39048 -20.12926 -19.74805 -19.23928 -18.66796 -18.56949 -17.71233 -17.55833 -17.18584 -16.91682 -16.81915 -16.43022 -16.32238 -15.83406 -15.47539 -15.46933 -15.13098 -15.11159 -14.94125 -14.62153 -14.26182 -13.98716 -13.88778 -13.68438 -13.54341 -12.95161 -12.87055 -12.84614 -12.69696 -12.43244 -12.10476 -12.10335 -11.56998 -11.47267 -11.25006 -10.55508 -10.30679 -10.08285 -9.78973 -9.46180 -8.50412 -6.00221 -0.73076 0.17245 1.03394 1.32055 1.35976 1.44304 1.57978 1.81450 1.90095 1.92202 2.05719 2.31845 2.68761 2.95866 3.10886 3.17143 3.17702 3.56089 3.65443 3.73025 3.75438 3.96837 4.04503 4.08327 4.21402 4.35808 4.43306 4.46941 4.84464 4.97266 5.13717 5.14617 5.20119 5.39925 5.48500 5.92691 5.97137 6.34603 6.40784 6.49813 7.02537 7.05117 7.45142 7.95028 8.66601 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.040304 B = 0.001737 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.546787 B =16112.872120 C =16627.623310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.088 0.912 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.622 6.622 12 C 0.120 3.880 13 N -0.699 5.699 14 C 0.562 3.438 15 O -0.573 6.573 16 C -0.116 4.116 17 C -0.091 4.091 18 C -0.060 4.060 19 C 0.051 3.949 20 N -0.473 5.473 21 C 0.216 3.784 22 C 0.365 3.635 23 F -0.191 7.191 24 F -0.191 7.191 25 N -0.566 5.566 26 H 0.443 0.557 27 C 0.042 3.958 28 C -0.041 4.041 29 H 0.279 0.721 30 H 0.399 0.601 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.415 0.585 34 H 0.152 0.848 35 H 0.161 0.839 36 H 0.191 0.809 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.201 -27.191 0.009 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.106 0.894 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.510 6.510 12 C -0.008 4.008 13 N -0.353 5.353 14 C 0.351 3.649 15 O -0.454 6.454 16 C -0.121 4.121 17 C -0.112 4.112 18 C -0.079 4.079 19 C -0.069 4.069 20 N -0.195 5.195 21 C -0.053 4.053 22 C 0.310 3.690 23 F -0.172 7.172 24 F -0.172 7.172 25 N -0.178 5.178 26 H 0.285 0.715 27 C -0.069 4.069 28 C -0.062 4.062 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.255 0.745 34 H 0.169 0.831 35 H 0.179 0.821 36 H 0.208 0.792 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.877 -27.248 0.002 28.363 hybrid contribution -1.491 0.916 0.004 1.750 sum 6.386 -26.332 0.007 27.095 Atomic orbital electron populations 1.69685 1.06991 1.29530 1.49417 1.26124 0.96530 1.02682 0.95863 0.84815 0.78195 0.76784 0.78218 1.19349 1.19746 1.19757 1.19780 0.93010 0.83494 1.50167 0.89438 1.41844 1.09623 1.04607 1.63405 1.20389 0.88142 0.85870 0.83590 1.90475 1.15073 1.87507 1.57966 1.20842 0.91606 0.83636 1.04678 1.45585 1.11732 1.04308 1.73635 1.18290 0.87927 0.82773 0.75941 1.90757 1.17339 1.85242 1.52102 1.19486 0.93754 0.92050 1.06765 1.21003 0.90793 1.00710 0.98648 1.20159 1.01711 0.87407 0.98664 1.19454 0.89379 0.93558 1.04505 1.70206 1.31729 0.97172 1.20354 1.24385 0.80918 0.97788 1.02223 1.20041 0.99716 0.78013 0.71234 1.93081 1.88947 1.84085 1.51059 1.93080 1.88887 1.84152 1.51060 1.42811 1.09959 1.04815 1.60205 0.71479 1.18712 0.96524 0.84222 1.07431 1.20018 0.99569 0.88656 0.97973 0.91120 0.76676 0.88351 0.88343 0.74458 0.83080 0.82118 0.79230 0.83618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.03 13.05 21.66 0.28 -47.75 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 3 Si 1.00 41.21 29.55 68.60 2.03 43.24 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.34 -18.11 9.68 84.04 0.81 -17.30 16 8 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.56 -27.38 5.29 -306.99 -1.62 -29.01 16 10 C 0.43 19.29 7.85 87.66 0.69 19.98 16 11 O -0.62 -30.96 15.24 -3.07 -0.05 -31.01 16 12 C 0.12 4.18 6.15 85.63 0.53 4.71 16 13 N -0.70 -21.94 5.48 -469.94 -2.57 -24.51 16 14 C 0.56 17.03 7.76 86.72 0.67 17.70 16 15 O -0.57 -20.36 16.33 -3.99 -0.07 -20.43 16 16 C -0.12 -2.83 5.88 -20.06 -0.12 -2.95 16 17 C -0.09 -1.89 9.46 22.26 0.21 -1.68 16 18 C -0.06 -1.16 10.03 22.22 0.22 -0.94 16 19 C 0.05 1.09 7.23 39.61 0.29 1.38 16 20 N -0.47 -9.27 11.26 -179.81 -2.03 -11.29 16 21 C 0.22 3.22 7.51 137.95 1.04 4.25 16 22 C 0.37 3.03 5.86 71.23 0.42 3.45 16 23 F -0.19 -2.01 17.32 44.97 0.78 -1.23 16 24 F -0.19 -2.01 17.32 44.97 0.78 -1.24 16 25 N -0.57 -8.38 6.23 -179.33 -1.12 -9.50 16 26 H 0.44 4.03 8.96 -92.71 -0.83 3.20 16 27 C 0.04 0.84 7.29 38.79 0.28 1.12 16 28 C -0.04 -0.89 9.61 22.58 0.22 -0.67 16 29 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 30 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 31 H 0.10 3.24 8.14 -2.38 -0.02 3.22 16 32 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.42 12.58 5.44 -92.71 -0.50 12.08 16 34 H 0.15 2.85 6.36 -2.91 -0.02 2.83 16 35 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 36 H 0.19 0.31 8.14 -2.38 -0.02 0.29 16 37 H 0.15 3.04 7.64 -2.91 -0.02 3.02 16 Total: -1.00 -69.66 342.45 1.28 -68.38 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.86 Total: 35.42 kcal Atomic # 6 Polarization: 23.20 SS G_CDS: 5.72 Total: 28.93 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -7.06 Total: -122.06 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -0.11 Total: -51.43 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 1.56 Total: -2.46 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -69.66 1.28 -68.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553307698.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.010 kcal (2) G-P(sol) polarization free energy of solvation -69.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds