Wall clock time and date at job start Tue Mar 31 2020 21:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00234 * 2 1 4 4 H 1.48497 * 109.46957 * 240.00251 * 3 2 1 5 5 H 1.48494 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47157 * 120.00230 * 3 2 1 7 7 C 1.38820 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00283 * 197.25961 * 7 2 1 9 9 N 1.36937 * 119.99269 * 17.25596 * 7 2 1 10 10 C 1.46928 * 120.62751 * 207.39032 * 9 7 2 11 11 C 1.53184 * 108.89946 * 233.68087 * 10 9 7 12 12 C 1.53045 * 109.31045 * 305.29664 * 11 10 9 13 13 N 1.46500 * 109.45772 * 181.38140 * 12 11 10 14 14 C 1.34777 * 119.99730 * 154.99987 * 13 12 11 15 15 O 1.21779 * 120.00234 * 359.97438 * 14 13 12 16 16 C 1.41715 * 120.00074 * 180.02562 * 14 13 12 17 17 S 1.75654 * 125.10295 * 0.02562 * 16 14 13 18 18 C 1.75557 * 91.21517 * 179.97438 * 17 16 14 19 19 C 1.34205 * 110.67739 * 359.97258 * 18 17 16 20 20 C 1.37149 * 125.10268 * 179.72175 * 16 14 13 21 21 O 1.37658 * 124.48334 * 0.26915 * 20 16 14 22 22 C 1.43375 * 114.49887 * 163.26102 * 21 20 16 23 23 C 1.53220 * 109.13472 * 46.53789 * 22 21 20 24 24 O 1.38238 * 124.13993 * 180.21424 * 19 18 17 25 25 C 1.53036 * 109.53839 * 61.36417 * 12 11 10 26 26 C 1.47200 * 120.81872 * 27.54201 * 9 7 2 27 27 H 0.97008 * 119.99917 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.58457 * 113.81908 * 10 9 7 29 29 H 1.09001 * 109.58548 * 353.54535 * 10 9 7 30 30 H 1.09004 * 109.49587 * 65.24382 * 11 10 9 31 31 H 1.09000 * 109.49989 * 185.34836 * 11 10 9 32 32 H 1.08993 * 109.45838 * 301.34309 * 12 11 10 33 33 H 0.96999 * 120.00683 * 335.00295 * 13 12 11 34 34 H 1.07999 * 124.65967 * 179.97438 * 18 17 16 35 35 H 1.09005 * 109.52759 * 166.43654 * 22 21 20 36 36 H 1.08995 * 109.53033 * 286.56681 * 22 21 20 37 37 H 1.09004 * 109.52151 * 57.62766 * 23 22 21 38 38 H 1.08997 * 109.52442 * 177.75277 * 23 22 21 39 39 H 1.09007 * 109.49849 * 58.58654 * 25 12 11 40 40 H 1.09003 * 109.49941 * 178.65147 * 25 12 11 41 41 H 1.09001 * 109.53557 * 6.52997 * 26 9 7 42 42 H 1.09002 * 109.67524 * 246.22900 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0538 -1.2234 0.2769 9 7 1.3717 -2.3612 -0.3529 10 6 1.8234 -3.6553 0.1762 11 6 2.0756 -4.6095 -0.9953 12 6 0.8160 -4.6926 -1.8606 13 7 1.0425 -5.6298 -2.9636 14 6 -0.0023 -6.2527 -3.5440 15 8 -1.1346 -6.0368 -3.1512 16 6 0.2168 -7.1597 -4.6106 17 16 1.7877 -7.5708 -5.2803 18 6 1.0495 -8.6644 -6.4383 19 6 -0.2841 -8.6827 -6.2892 20 6 -0.7654 -7.8527 -5.2709 21 8 -2.1096 -7.7578 -4.9898 22 6 -2.9696 -8.2608 -6.0209 23 6 -2.4490 -9.6239 -6.4885 24 8 -1.1399 -9.4524 -7.0549 25 6 0.4915 -3.3083 -2.4264 26 6 0.2213 -2.3393 -1.2711 27 1 -0.4850 0.8401 0.0004 28 1 1.0553 -4.0719 0.8279 29 1 2.7458 -3.5175 0.7404 30 1 2.9055 -4.2369 -1.5959 31 1 2.3194 -5.6002 -0.6117 32 1 -0.0192 -5.0417 -1.2534 33 1 1.9445 -5.8022 -3.2762 34 1 1.5938 -9.2430 -7.1700 35 1 -3.9810 -8.3717 -5.6298 36 1 -2.9778 -7.5653 -6.8600 37 1 -2.4004 -10.3060 -5.6396 38 1 -3.1206 -10.0305 -7.2445 39 1 1.3363 -2.9479 -3.0135 40 1 -0.3919 -3.3728 -3.0618 41 1 0.0872 -1.3312 -1.6633 42 1 -0.6788 -2.6470 -0.7390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593977122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:23 Heat of formation + Delta-G solvation = -43.885652 kcal Electronic energy + Delta-G solvation = -27004.669051 eV Core-core repulsion = 23078.201928 eV Total energy + Delta-G solvation = -3926.467123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.33508 -39.64457 -37.48258 -37.14253 -35.85238 -34.34739 -32.20864 -30.52403 -30.15696 -29.83018 -29.07666 -25.63966 -24.41763 -24.06082 -22.22246 -22.05845 -20.78386 -19.70113 -19.50700 -18.85639 -17.56792 -17.20893 -16.72888 -16.52788 -15.78318 -15.43542 -15.12249 -14.96121 -14.72974 -14.54917 -14.46734 -13.87336 -13.66026 -13.46295 -13.42182 -13.02388 -12.95413 -12.52335 -12.35548 -11.66572 -11.45611 -11.42641 -11.33557 -11.10159 -11.07447 -10.90248 -10.69185 -10.36115 -10.23198 -10.04009 -9.85414 -9.72004 -9.48615 -8.92664 -8.62949 -8.38310 -8.29355 -6.66116 -5.75239 -3.17526 0.14767 1.03968 1.27599 1.88932 2.90558 3.11329 3.33438 3.37070 3.41291 3.46726 3.47629 3.80627 4.19333 4.46328 4.52150 4.52282 4.88926 4.98555 5.01398 5.14692 5.16126 5.36252 5.44501 5.49098 5.64556 5.66901 5.86823 6.12087 6.26981 6.28692 6.37588 6.47658 6.64379 6.68747 6.74108 6.81882 6.95400 6.97821 7.41306 7.68597 7.73614 7.82172 8.40277 8.47802 9.23638 9.87363 10.44553 11.33465 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.023900 B = 0.002527 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.288530 B =11077.001560 C =11571.327044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.140 4.140 12 C 0.153 3.847 13 N -0.723 5.723 14 C 0.585 3.415 15 O -0.515 6.515 16 C -0.271 4.271 17 S 0.210 5.790 18 C -0.214 4.214 19 C 0.034 3.966 20 C 0.124 3.876 21 O -0.258 6.258 22 C 0.011 3.989 23 C 0.018 3.982 24 O -0.292 6.292 25 C -0.146 4.146 26 C 0.173 3.827 27 H 0.255 0.745 28 H 0.020 0.980 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.390 0.610 34 H 0.181 0.819 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 -21.518 -15.375 26.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.022 3.978 11 C -0.179 4.179 12 C 0.050 3.950 13 N -0.374 5.374 14 C 0.371 3.629 15 O -0.393 6.393 16 C -0.391 4.391 17 S 0.473 5.527 18 C -0.351 4.351 19 C -0.022 4.022 20 C 0.062 3.938 21 O -0.170 6.170 22 C -0.065 4.065 23 C -0.058 4.058 24 O -0.208 6.208 25 C -0.187 4.187 26 C 0.047 3.953 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.223 0.777 34 H 0.199 0.801 35 H 0.144 0.856 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.142 0.858 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.547 -20.754 -14.736 25.459 hybrid contribution -0.790 0.179 -0.711 1.077 sum -0.243 -20.575 -15.446 25.729 Atomic orbital electron populations 1.70028 1.05260 1.25632 1.53635 1.25047 0.95271 0.98417 1.00922 0.86370 0.78899 0.83413 0.78074 1.21076 1.21660 1.20898 1.19131 0.92635 0.84856 1.41730 0.91652 1.44155 1.35512 1.01301 1.50589 1.20828 0.97978 0.86746 0.92287 1.22350 0.96628 0.99808 0.99159 1.21062 0.98846 0.88710 0.86382 1.46229 1.08361 1.45573 1.37194 1.15548 0.85692 0.80090 0.81536 1.90901 1.21825 1.63652 1.62893 1.22726 0.96717 1.10368 1.09317 1.84098 1.03718 1.38776 1.26124 1.24927 0.94994 1.07865 1.07309 1.18245 0.90699 0.97057 0.96230 1.18905 0.85510 0.94437 0.94898 1.87227 1.11120 1.78449 1.40246 1.23741 0.95279 0.95069 0.92387 1.23692 0.83406 0.97475 1.01274 1.87119 1.22698 1.67498 1.43471 1.22566 1.00539 0.95026 1.00552 1.20805 0.88576 0.98221 0.87702 0.93543 0.96171 0.92336 0.91815 0.92550 0.89804 0.77703 0.80143 0.85556 0.90201 0.90236 0.85759 0.92644 0.92762 0.89207 0.96073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 11.18 55.49 0.62 -25.98 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.99 9.59 -15.06 -0.14 -7.13 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.99 3.01 -172.10 -0.52 -15.51 16 10 C 0.15 3.10 6.50 -3.71 -0.02 3.08 16 11 C -0.14 -2.38 5.55 -26.61 -0.15 -2.52 16 12 C 0.15 2.79 2.42 -67.89 -0.16 2.62 16 13 N -0.72 -11.18 5.06 -56.63 -0.29 -11.47 16 14 C 0.58 9.92 7.56 -14.93 -0.11 9.81 16 15 O -0.52 -10.79 15.52 -11.90 -0.18 -10.97 16 16 C -0.27 -3.76 6.25 -38.65 -0.24 -4.00 16 17 S 0.21 1.97 22.17 -107.50 -2.38 -0.42 16 18 C -0.21 -1.92 11.17 29.31 0.33 -1.59 16 19 C 0.03 0.38 6.54 -40.38 -0.26 0.12 16 20 C 0.12 1.67 6.58 -39.35 -0.26 1.41 16 21 O -0.26 -3.61 9.60 -49.15 -0.47 -4.08 16 22 C 0.01 0.10 7.13 37.27 0.27 0.36 16 23 C 0.02 0.12 7.15 37.27 0.27 0.39 16 24 O -0.29 -2.88 10.78 -35.37 -0.38 -3.26 16 25 C -0.15 -3.03 5.65 -26.61 -0.15 -3.18 16 26 C 0.17 4.30 5.33 -3.56 -0.02 4.28 16 27 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.70 7.57 -51.93 -0.39 1.31 16 33 H 0.39 4.91 7.54 -40.82 -0.31 4.60 16 34 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.13 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.09 2.48 6.04 -51.93 -0.31 2.17 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 355.32 15.07 5.35 5.35 Total: -1.00 -34.65 355.32 -9.66 -44.30 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.63 Total: 1.62 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -0.75 Total: 3.61 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.18 Total: -52.95 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -1.04 Total: -18.32 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.38 Total: -0.42 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.65 -9.66 -44.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593977122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.419 kcal (2) G-P(sol) polarization free energy of solvation -34.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds