Wall clock time and date at job start Tue Mar 31 2020 21:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00234 * 2 1 4 4 H 1.48497 * 109.46957 * 240.00251 * 3 2 1 5 5 H 1.48494 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47157 * 120.00230 * 3 2 1 7 7 C 1.38820 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00283 * 197.25961 * 7 2 1 9 9 N 1.36937 * 119.99269 * 17.25596 * 7 2 1 10 10 C 1.46928 * 120.62751 * 207.39032 * 9 7 2 11 11 C 1.53184 * 108.89946 * 233.68087 * 10 9 7 12 12 C 1.53045 * 109.31045 * 305.29664 * 11 10 9 13 13 N 1.46500 * 109.45772 * 181.38140 * 12 11 10 14 14 C 1.34777 * 119.99730 * 154.99987 * 13 12 11 15 15 O 1.21779 * 120.00234 * 359.97438 * 14 13 12 16 16 C 1.41715 * 120.00074 * 180.02562 * 14 13 12 17 17 S 1.75654 * 125.10295 * 0.02562 * 16 14 13 18 18 C 1.75557 * 91.21517 * 179.97438 * 17 16 14 19 19 C 1.34205 * 110.67739 * 359.97258 * 18 17 16 20 20 C 1.37149 * 125.10268 * 179.72175 * 16 14 13 21 21 O 1.37658 * 124.48334 * 0.26915 * 20 16 14 22 22 C 1.43375 * 114.49887 * 163.26102 * 21 20 16 23 23 C 1.53220 * 109.13472 * 46.53789 * 22 21 20 24 24 O 1.38238 * 124.13993 * 180.21424 * 19 18 17 25 25 C 1.53036 * 109.53839 * 61.36417 * 12 11 10 26 26 C 1.47200 * 120.81872 * 27.54201 * 9 7 2 27 27 H 0.97008 * 119.99917 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.58457 * 113.81908 * 10 9 7 29 29 H 1.09001 * 109.58548 * 353.54535 * 10 9 7 30 30 H 1.09004 * 109.49587 * 65.24382 * 11 10 9 31 31 H 1.09000 * 109.49989 * 185.34836 * 11 10 9 32 32 H 1.08993 * 109.45838 * 301.34309 * 12 11 10 33 33 H 0.96999 * 120.00683 * 335.00295 * 13 12 11 34 34 H 1.07999 * 124.65967 * 179.97438 * 18 17 16 35 35 H 1.09005 * 109.52759 * 166.43654 * 22 21 20 36 36 H 1.08995 * 109.53033 * 286.56681 * 22 21 20 37 37 H 1.09004 * 109.52151 * 57.62766 * 23 22 21 38 38 H 1.08997 * 109.52442 * 177.75277 * 23 22 21 39 39 H 1.09007 * 109.49849 * 58.58654 * 25 12 11 40 40 H 1.09003 * 109.49941 * 178.65147 * 25 12 11 41 41 H 1.09001 * 109.53557 * 6.52997 * 26 9 7 42 42 H 1.09002 * 109.67524 * 246.22900 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0538 -1.2234 0.2769 9 7 1.3717 -2.3612 -0.3529 10 6 1.8234 -3.6553 0.1762 11 6 2.0756 -4.6095 -0.9953 12 6 0.8160 -4.6926 -1.8606 13 7 1.0425 -5.6298 -2.9636 14 6 -0.0023 -6.2527 -3.5440 15 8 -1.1346 -6.0368 -3.1512 16 6 0.2168 -7.1597 -4.6106 17 16 1.7877 -7.5708 -5.2803 18 6 1.0495 -8.6644 -6.4383 19 6 -0.2841 -8.6827 -6.2892 20 6 -0.7654 -7.8527 -5.2709 21 8 -2.1096 -7.7578 -4.9898 22 6 -2.9696 -8.2608 -6.0209 23 6 -2.4490 -9.6239 -6.4885 24 8 -1.1399 -9.4524 -7.0549 25 6 0.4915 -3.3083 -2.4264 26 6 0.2213 -2.3393 -1.2711 27 1 -0.4850 0.8401 0.0004 28 1 1.0553 -4.0719 0.8279 29 1 2.7458 -3.5175 0.7404 30 1 2.9055 -4.2369 -1.5959 31 1 2.3194 -5.6002 -0.6117 32 1 -0.0192 -5.0417 -1.2534 33 1 1.9445 -5.8022 -3.2762 34 1 1.5938 -9.2430 -7.1700 35 1 -3.9810 -8.3717 -5.6298 36 1 -2.9778 -7.5653 -6.8600 37 1 -2.4004 -10.3060 -5.6396 38 1 -3.1206 -10.0305 -7.2445 39 1 1.3363 -2.9479 -3.0135 40 1 -0.3919 -3.3728 -3.0618 41 1 0.0872 -1.3312 -1.6633 42 1 -0.6788 -2.6470 -0.7390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593977122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:23 Heat of formation + Delta-G solvation = -68.240168 kcal Electronic energy + Delta-G solvation = -27005.725142 eV Core-core repulsion = 23078.201928 eV Total energy + Delta-G solvation = -3927.523214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.14144 -40.96149 -39.00240 -38.06593 -36.71804 -35.99640 -34.00226 -32.05752 -31.50792 -30.81447 -30.39135 -27.19690 -25.79336 -24.74513 -23.93104 -23.62955 -22.03338 -21.20192 -20.34746 -20.04302 -18.83374 -18.34365 -18.02218 -17.51132 -17.01767 -16.70137 -16.36403 -16.06104 -15.83751 -15.63188 -15.48801 -15.37855 -15.35521 -14.87964 -14.64445 -14.36641 -14.17537 -14.04676 -13.67369 -13.20011 -13.01023 -12.66690 -12.55819 -12.44273 -12.14956 -12.11901 -12.09541 -12.04046 -11.87527 -11.80348 -11.55805 -11.42617 -11.06326 -10.57665 -10.14222 -9.66344 -9.04838 -8.72523 -7.86860 -5.32620 -0.75058 0.25225 0.48862 1.04285 1.48130 1.51204 1.57861 2.05484 2.08837 2.23476 2.46514 2.52423 3.06452 3.29036 3.52280 3.64881 3.81381 3.90205 3.96033 4.04192 4.06496 4.23917 4.31219 4.39484 4.45713 4.51303 4.58381 4.65060 4.76457 4.82058 4.87839 5.02472 5.06043 5.11988 5.30145 5.44155 5.48024 5.59318 5.63878 5.68667 5.96447 6.38192 6.47117 7.12795 7.15821 7.83831 8.37640 9.20522 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.023900 B = 0.002527 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.288530 B =11077.001560 C =11571.327044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.056 4.056 3 Si 0.971 3.029 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.272 1.272 7 C -0.262 4.262 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.142 3.858 11 C -0.123 4.123 12 C 0.163 3.837 13 N -0.710 5.710 14 C 0.585 3.415 15 O -0.569 6.569 16 C -0.323 4.323 17 S 0.274 5.726 18 C -0.190 4.190 19 C 0.012 3.988 20 C 0.119 3.881 21 O -0.297 6.297 22 C 0.001 3.999 23 C 0.019 3.981 24 O -0.299 6.299 25 C -0.130 4.130 26 C 0.183 3.817 27 H 0.249 0.751 28 H 0.012 0.988 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.407 0.593 34 H 0.216 0.784 35 H 0.148 0.852 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.162 0.838 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.057 0.943 42 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 -23.652 -17.228 29.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.251 4.251 3 Si 0.799 3.201 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.198 1.198 7 C -0.391 4.391 8 H 0.093 0.907 9 N -0.333 5.333 10 C 0.016 3.984 11 C -0.162 4.162 12 C 0.059 3.941 13 N -0.361 5.361 14 C 0.374 3.626 15 O -0.450 6.450 16 C -0.443 4.443 17 S 0.538 5.462 18 C -0.327 4.327 19 C -0.044 4.044 20 C 0.057 3.943 21 O -0.210 6.210 22 C -0.074 4.074 23 C -0.056 4.056 24 O -0.215 6.215 25 C -0.171 4.171 26 C 0.057 3.943 27 H 0.058 0.942 28 H 0.030 0.970 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.244 0.756 34 H 0.233 0.767 35 H 0.166 0.834 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.180 0.820 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges 3.294 -22.930 -16.602 28.500 hybrid contribution -1.659 0.735 -0.172 1.823 sum 1.635 -22.196 -16.774 27.869 Atomic orbital electron populations 1.70210 1.06952 1.25926 1.55466 1.25886 0.95998 1.01854 1.01331 0.85290 0.77460 0.78899 0.78501 1.20226 1.22441 1.19758 1.19553 0.93186 0.85794 1.40616 0.90662 1.44401 1.35258 1.02541 1.51098 1.21034 0.97980 0.85509 0.93876 1.22165 0.95933 1.00664 0.97426 1.20705 0.98887 0.87523 0.86982 1.45902 1.09191 1.44678 1.36358 1.15954 0.84938 0.79957 0.81719 1.90865 1.23838 1.65569 1.64758 1.22600 0.99890 1.11754 1.10035 1.83764 1.00148 1.37546 1.24758 1.25475 0.94516 1.06220 1.06480 1.18282 0.91647 0.97906 0.96551 1.19307 0.85403 0.94417 0.95202 1.87162 1.12147 1.79073 1.42631 1.24087 0.95613 0.96029 0.91630 1.23918 0.82797 0.96367 1.02559 1.87100 1.23582 1.67222 1.43599 1.22309 1.00280 0.95814 0.98657 1.20495 0.87806 0.97343 0.88676 0.94195 0.97046 0.91100 0.90385 0.88904 0.92351 0.75608 0.76701 0.83438 0.90098 0.90064 0.82038 0.91849 0.93914 0.92506 0.99290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.61 11.18 21.65 0.24 -57.37 16 2 C -0.06 -3.17 4.92 84.86 0.42 -2.75 16 3 Si 0.97 45.34 29.59 68.60 2.03 47.37 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.26 -14.45 9.59 84.04 0.81 -13.64 16 8 H 0.08 3.94 7.89 -2.91 -0.02 3.92 16 9 N -0.61 -31.28 3.01 -698.39 -2.10 -33.38 16 10 C 0.14 5.82 6.50 86.36 0.56 6.38 16 11 C -0.12 -3.91 5.55 30.67 0.17 -3.74 16 12 C 0.16 5.94 2.42 45.02 0.11 6.05 16 13 N -0.71 -21.34 5.06 -451.26 -2.28 -23.63 16 14 C 0.59 20.12 7.56 85.10 0.64 20.77 16 15 O -0.57 -25.09 15.52 11.67 0.18 -24.91 16 16 C -0.32 -8.77 6.25 22.87 0.14 -8.63 16 17 S 0.27 4.32 22.17 -56.49 -1.25 3.06 16 18 C -0.19 -2.74 11.17 66.90 0.75 -1.99 16 19 C 0.01 0.24 6.54 21.75 0.14 0.39 16 20 C 0.12 3.19 6.58 22.42 0.15 3.34 16 21 O -0.30 -8.55 9.60 -90.59 -0.87 -9.42 16 22 C 0.00 0.02 7.13 72.06 0.51 0.54 16 23 C 0.02 0.23 7.15 72.06 0.52 0.74 16 24 O -0.30 -5.24 10.78 -112.95 -1.22 -6.46 16 25 C -0.13 -5.53 5.65 30.67 0.17 -5.36 16 26 C 0.18 9.55 5.33 86.31 0.46 10.01 16 27 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16 28 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.06 2.46 7.57 -2.39 -0.02 2.44 16 33 H 0.41 9.26 7.54 -92.71 -0.70 8.56 16 34 H 0.22 1.55 8.06 -2.91 -0.02 1.52 16 35 H 0.15 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.16 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 2.57 8.14 -2.38 -0.02 2.56 16 40 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 3.32 6.04 -2.39 -0.01 3.30 16 42 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 Total: -1.00 -80.05 355.32 0.64 -79.41 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.36 Total: 13.22 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 5.55 Total: 12.10 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -4.14 Total: -114.37 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -1.91 Total: -40.79 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.25 Total: 3.06 kcal Total: -80.05 0.64 -79.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593977122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.169 kcal (2) G-P(sol) polarization free energy of solvation -80.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds