Wall clock time and date at job start Tue Mar 31 2020 21:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.47186 * 179.97438 * 11 10 9 13 13 O 1.42102 * 110.54376 * 291.62375 * 12 11 10 14 14 O 1.42104 * 110.54252 * 68.37033 * 12 11 10 15 15 N 1.65603 * 104.45253 * 179.97438 * 12 11 10 16 16 C 1.46500 * 119.99490 * 64.99880 * 15 12 11 17 17 H 1.08996 * 109.41921 * 334.86946 * 16 15 12 18 18 C 1.52889 * 109.41644 * 214.99880 * 16 15 12 19 19 C 1.50712 * 109.68773 * 288.09668 * 18 16 15 20 20 C 1.38158 * 119.93970 * 147.08438 * 19 18 16 21 21 C 1.38262 * 120.05049 * 179.49644 * 20 19 18 22 22 C 1.38304 * 120.12542 * 359.93994 * 21 20 19 23 23 C 1.38078 * 120.08196 * 0.25207 * 22 21 20 24 24 C 1.38747 * 120.07710 * 326.99805 * 19 18 16 25 25 N 1.39758 * 120.23647 * 1.20758 * 24 19 18 26 26 C 1.34433 * 120.67215 * 14.18465 * 25 24 19 27 27 O 1.21291 * 119.69957 * 185.86735 * 26 25 24 28 28 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 30 30 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 31 31 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 32 32 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 33 33 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 34 34 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 35 35 H 0.96997 * 120.00428 * 245.00018 * 15 12 11 36 36 H 1.09006 * 109.43125 * 48.15904 * 18 16 15 37 37 H 1.09001 * 109.43666 * 168.07098 * 18 16 15 38 38 H 1.07990 * 119.97353 * 359.47587 * 20 19 18 39 39 H 1.07993 * 119.93659 * 179.97438 * 21 20 19 40 40 H 1.07997 * 119.96443 * 180.27867 * 22 21 20 41 41 H 1.07994 * 120.03926 * 180.02562 * 23 22 21 42 42 H 0.97002 * 119.66342 * 194.21570 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 16 2.6592 -6.3658 -0.0019 13 8 3.3559 -6.4256 -1.2390 14 8 3.3561 -6.4267 1.2350 15 7 1.7089 -7.7221 -0.0019 16 6 0.8490 -8.0139 -1.1515 17 1 0.6137 -7.0861 -1.6728 18 6 -0.4455 -8.6662 -0.6654 19 6 -0.1632 -10.0732 -0.2048 20 6 -0.8901 -10.6166 0.8368 21 6 -0.6402 -11.9108 1.2544 22 6 0.3368 -12.6650 0.6304 23 6 1.0692 -12.1258 -0.4085 24 6 0.8244 -10.8235 -0.8266 25 7 1.5789 -10.2709 -1.8653 26 6 1.5682 -8.9457 -2.0909 27 8 2.1427 -8.4964 -3.0600 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8720 -3.6043 -0.8905 32 1 2.8720 -3.6043 0.8894 33 1 0.8535 -5.0451 0.8886 34 1 0.8539 -5.0446 -0.8913 35 1 1.7215 -8.3232 0.7593 36 1 -0.8537 -8.0882 0.1637 37 1 -1.1680 -8.6904 -1.4811 38 1 -1.6540 -10.0301 1.3254 39 1 -1.2092 -12.3336 2.0691 40 1 0.5268 -13.6772 0.9557 41 1 1.8316 -12.7156 -0.8956 42 1 2.1154 -10.8496 -2.4293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599458024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:25 Heat of formation + Delta-G solvation = -122.890084 kcal Electronic energy + Delta-G solvation = -26848.786945 eV Core-core repulsion = 22918.893933 eV Total energy + Delta-G solvation = -3929.893012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.15079 -39.69737 -38.24249 -37.17098 -37.03469 -36.46744 -36.03111 -34.16366 -33.20580 -30.56338 -29.68164 -29.63969 -25.64421 -25.46300 -23.86263 -23.55379 -22.46192 -20.69337 -20.35606 -19.03052 -18.91691 -18.51490 -18.15415 -17.66221 -17.19468 -16.74918 -16.47712 -16.37081 -16.08263 -15.82459 -15.37112 -15.29868 -14.83331 -14.61369 -14.49192 -14.08644 -13.85353 -13.63722 -13.46851 -13.38189 -13.25252 -13.15950 -13.00074 -12.77592 -12.74285 -12.62442 -12.26588 -12.14362 -12.07585 -11.89736 -11.73584 -11.65317 -11.36004 -11.08646 -10.56092 -10.51947 -9.70727 -8.97780 -8.21971 -6.32163 -0.86170 0.22289 0.44139 1.24805 1.40671 1.41138 1.52351 1.82866 1.95386 2.40348 2.66962 2.88576 3.11715 3.13258 3.24505 3.49347 3.61132 3.69804 3.86333 3.95016 4.03669 4.24395 4.32341 4.41409 4.49571 4.57574 4.66109 4.68778 4.80556 4.95242 5.00481 5.07123 5.11788 5.21849 5.46985 5.49754 5.65481 5.67127 5.70284 5.80902 5.85000 5.92673 6.17777 6.21412 6.83148 6.87551 7.36841 8.89374 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.021683 B = 0.002525 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.041748 B =11086.142881 C =11444.963371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.553 4.553 8 H 0.057 0.943 9 C 0.032 3.968 10 C -0.108 4.108 11 C -0.601 4.601 12 S 2.614 3.386 13 O -0.983 6.983 14 O -0.986 6.986 15 N -1.092 6.092 16 C 0.136 3.864 17 H 0.134 0.866 18 C -0.084 4.084 19 C -0.135 4.135 20 C -0.082 4.082 21 C -0.143 4.143 22 C -0.093 4.093 23 C -0.160 4.160 24 C 0.138 3.862 25 N -0.654 5.654 26 C 0.499 3.501 27 O -0.546 6.546 28 H 0.265 0.735 29 H 0.006 0.994 30 H 0.008 0.992 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.429 0.571 36 H 0.132 0.868 37 H 0.116 0.884 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.158 -28.927 2.797 29.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.591 4.591 8 H 0.076 0.924 9 C -0.006 4.006 10 C -0.147 4.147 11 C -0.733 4.733 12 S 2.710 3.290 13 O -0.973 6.973 14 O -0.976 6.976 15 N -0.853 5.853 16 C 0.025 3.975 17 H 0.152 0.848 18 C -0.122 4.122 19 C -0.137 4.137 20 C -0.100 4.100 21 C -0.162 4.162 22 C -0.112 4.112 23 C -0.181 4.181 24 C 0.043 3.957 25 N -0.298 5.298 26 C 0.284 3.716 27 O -0.421 6.421 28 H 0.074 0.926 29 H 0.024 0.976 30 H 0.027 0.973 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.177 0.823 34 H 0.168 0.832 35 H 0.266 0.734 36 H 0.150 0.850 37 H 0.134 0.866 38 H 0.171 0.829 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.156 0.844 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -5.089 -28.305 2.165 28.840 hybrid contribution 0.239 0.626 -0.239 0.712 sum -4.849 -27.679 1.926 28.166 Atomic orbital electron populations 1.70053 1.07474 1.27868 1.51375 1.25884 0.95818 1.03040 0.94640 0.85524 0.78748 0.78784 0.78497 1.19882 1.20408 1.19056 1.21742 0.93676 0.92664 1.51017 0.92432 1.18958 0.93945 0.91450 0.96253 1.21327 0.98812 0.92596 1.01993 1.30438 1.16273 1.12629 1.13945 1.04804 0.75521 0.75632 0.73002 1.93622 1.71101 1.85983 1.46586 1.93547 1.71479 1.86400 1.46194 1.55419 1.61601 1.41652 1.26651 1.21128 0.91076 0.99605 0.85726 0.84831 1.20975 0.94188 0.92152 1.04843 1.19592 0.97832 0.96636 0.99682 1.21190 0.98509 0.95840 0.94487 1.21474 0.98979 0.94481 1.01242 1.21294 0.94720 1.00831 0.94315 1.21032 1.02987 0.93807 1.00231 1.17911 0.93333 0.94211 0.90294 1.43540 1.46325 1.07624 1.32293 1.21577 0.80408 0.83625 0.85994 1.90839 1.44271 1.76377 1.30567 0.92610 0.97609 0.97314 0.91934 0.91529 0.82275 0.83178 0.73355 0.85025 0.86635 0.82925 0.83597 0.83523 0.84450 0.74777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.02 13.29 21.45 0.28 -54.73 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.55 -31.35 9.11 25.60 0.23 -31.12 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 9 C 0.03 1.63 4.97 29.85 0.15 1.78 16 10 C -0.11 -4.33 5.16 30.59 0.16 -4.17 16 11 C -0.60 -16.96 5.96 71.98 0.43 -16.53 16 12 S 2.61 75.87 5.38 -56.49 -0.30 75.56 16 13 O -0.98 -37.18 17.62 -127.64 -2.25 -39.43 16 14 O -0.99 -33.94 18.08 -127.65 -2.31 -36.24 16 15 N -1.09 -21.82 5.32 -172.82 -0.92 -22.74 16 16 C 0.14 2.51 2.81 44.18 0.12 2.64 16 17 H 0.13 2.28 7.14 -2.39 -0.02 2.26 16 18 C -0.08 -0.88 5.58 29.81 0.17 -0.72 16 19 C -0.13 -1.61 5.24 -19.76 -0.10 -1.72 16 20 C -0.08 -0.70 9.68 22.26 0.22 -0.48 16 21 C -0.14 -1.12 10.04 22.29 0.22 -0.90 16 22 C -0.09 -0.80 10.04 22.25 0.22 -0.58 16 23 C -0.16 -1.82 9.90 22.40 0.22 -1.60 16 24 C 0.14 2.01 6.53 38.17 0.25 2.26 16 25 N -0.65 -12.04 5.35 -304.20 -1.63 -13.67 16 26 C 0.50 12.31 7.22 87.68 0.63 12.94 16 27 O -0.55 -18.87 17.79 -3.06 -0.05 -18.92 16 28 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 29 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.16 3.61 8.14 -2.39 -0.02 3.59 16 34 H 0.15 3.58 7.44 -2.39 -0.02 3.56 16 35 H 0.43 6.88 8.42 -96.75 -0.82 6.07 16 36 H 0.13 0.74 8.06 -2.38 -0.02 0.72 16 37 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.15 0.61 8.06 -2.92 -0.02 0.58 16 39 H 0.15 0.52 8.06 -2.91 -0.02 0.50 16 40 H 0.15 0.62 8.06 -2.91 -0.02 0.60 16 41 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.41 6.66 8.81 -92.71 -0.82 5.84 16 Total: -1.00 -84.79 368.40 -2.34 -87.13 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -0.57 Total: 14.28 kcal Atomic # 6 Polarization: -40.85 SS G_CDS: 3.38 Total: -37.47 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -2.26 Total: -91.14 kcal Atomic # 8 Polarization: -89.98 SS G_CDS: -4.61 Total: -94.60 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 75.87 SS G_CDS: -0.30 Total: 75.56 kcal Total: -84.79 -2.34 -87.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599458024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.764 kcal (2) G-P(sol) polarization free energy of solvation -84.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds