Wall clock time and date at job start Tue Mar 31 2020 21:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46894 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47329 * 180.02562 * 10 9 7 12 12 S 1.81404 * 109.47109 * 180.02562 * 11 10 9 13 13 O 1.42100 * 110.54213 * 291.62230 * 12 11 10 14 14 O 1.42096 * 110.54259 * 68.37192 * 12 11 10 15 15 N 1.65600 * 104.44618 * 180.02562 * 12 11 10 16 16 C 1.46495 * 120.00296 * 64.99896 * 15 12 11 17 17 H 1.09000 * 109.42339 * 25.00145 * 16 15 12 18 18 C 1.52901 * 109.42187 * 144.87245 * 16 15 12 19 19 C 1.50585 * 109.72459 * 71.76613 * 18 16 15 20 20 C 1.38139 * 119.98606 * 212.66488 * 19 18 16 21 21 C 1.38265 * 120.07233 * 181.95271 * 20 19 18 22 22 C 1.38304 * 120.11171 * 0.14918 * 21 20 19 23 23 C 1.38083 * 120.06192 * 359.48574 * 22 21 20 24 24 C 1.38818 * 120.05176 * 33.49558 * 19 18 16 25 25 N 1.39755 * 120.10456 * 358.33981 * 24 19 18 26 26 C 1.34411 * 120.78238 * 345.81831 * 25 24 19 27 27 O 1.21280 * 119.68268 * 174.55430 * 26 25 24 28 28 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 30 30 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 31 31 H 1.09000 * 109.46984 * 300.00380 * 10 9 7 32 32 H 1.08999 * 109.46611 * 59.99865 * 10 9 7 33 33 H 1.09000 * 109.47250 * 300.00036 * 11 10 9 34 34 H 1.08998 * 109.47060 * 60.00002 * 11 10 9 35 35 H 0.97003 * 119.99726 * 244.99254 * 15 12 11 36 36 H 1.09004 * 109.44125 * 191.86307 * 18 16 15 37 37 H 1.08998 * 109.44358 * 311.75584 * 18 16 15 38 38 H 1.07999 * 119.96487 * 1.90348 * 20 19 18 39 39 H 1.08000 * 119.94386 * 180.17457 * 21 20 19 40 40 H 1.07999 * 119.96932 * 179.50505 * 22 21 20 41 41 H 1.08001 * 120.01222 * 179.63482 * 23 22 21 42 42 H 0.97007 * 119.61007 * 165.78823 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 16 6.1563 -4.3467 -0.0016 13 8 5.8602 -4.9807 1.2352 14 8 5.8602 -4.9798 -1.2387 15 7 7.8060 -4.2016 -0.0007 16 6 8.4882 -3.6039 1.1497 17 1 7.8703 -3.7231 2.0396 18 6 9.8302 -4.3043 1.3652 19 6 10.7900 -3.9104 0.2738 20 6 11.7366 -4.8124 -0.1719 21 6 12.6449 -4.4394 -1.1453 22 6 12.6103 -3.1616 -1.6734 23 6 11.6615 -2.2582 -1.2371 24 6 10.7358 -2.6356 -0.2730 25 7 9.7683 -1.7263 0.1633 26 6 8.7158 -2.1380 0.8908 27 8 7.9417 -1.3211 1.3428 28 1 -0.4849 0.8401 -0.0004 29 1 3.8746 -0.6800 -0.8911 30 1 3.8753 -0.6803 0.8889 31 1 3.6586 -3.1501 0.8892 32 1 3.6580 -3.1504 -0.8907 33 1 5.9150 -2.1226 -0.8909 34 1 5.9149 -2.1225 0.8890 35 1 8.3205 -4.5125 -0.7620 36 1 10.2406 -4.0126 2.3319 37 1 9.6833 -5.3842 1.3449 38 1 11.7678 -5.8098 0.2411 39 1 13.3822 -5.1471 -1.4943 40 1 13.3259 -2.8701 -2.4280 41 1 11.6390 -1.2588 -1.6457 42 1 9.8577 -0.7868 -0.0613 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599458025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:29 Heat of formation + Delta-G solvation = -120.244782 kcal Electronic energy + Delta-G solvation = -27201.155794 eV Core-core repulsion = 23271.377491 eV Total energy + Delta-G solvation = -3929.778303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.21351 -39.76167 -38.33245 -37.25785 -37.04268 -36.55241 -36.07325 -34.28991 -33.24928 -30.59392 -30.21755 -29.69255 -25.59881 -25.35563 -23.88889 -23.56965 -22.33351 -20.77849 -20.41117 -19.09268 -19.00200 -18.87207 -18.23250 -17.72903 -17.27896 -16.81270 -16.42383 -16.33049 -16.25510 -15.79957 -15.40874 -15.37574 -14.90868 -14.85637 -14.61649 -14.14929 -13.87742 -13.77008 -13.60699 -13.42374 -13.33743 -13.28644 -13.23931 -12.81538 -12.73302 -12.63489 -12.24878 -12.17513 -11.96208 -11.89107 -11.73763 -11.67027 -11.45125 -11.24110 -10.81322 -10.60445 -9.72236 -8.99645 -8.33821 -6.38936 -0.91096 0.17163 0.42786 1.14592 1.32410 1.33527 1.45857 1.77511 1.92328 2.32034 2.58126 2.86931 3.00848 3.06192 3.16417 3.44566 3.60150 3.61221 3.81975 3.90453 4.04374 4.20106 4.27355 4.32845 4.48669 4.53821 4.56617 4.66702 4.77386 4.81455 4.92358 4.97567 5.09894 5.19894 5.28233 5.39497 5.47708 5.58012 5.65561 5.66363 5.81469 5.89847 6.15108 6.21556 6.68206 6.80328 7.25574 8.82935 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.003112 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.858755 B = 8996.664208 C = 9942.948437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.248 1.248 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.036 0.964 9 C -0.003 4.003 10 C -0.099 4.099 11 C -0.620 4.620 12 S 2.629 3.371 13 O -0.975 6.975 14 O -0.980 6.980 15 N -1.090 6.090 16 C 0.130 3.870 17 H 0.136 0.864 18 C -0.079 4.079 19 C -0.134 4.134 20 C -0.084 4.084 21 C -0.142 4.142 22 C -0.094 4.094 23 C -0.157 4.157 24 C 0.138 3.862 25 N -0.647 5.647 26 C 0.499 3.501 27 O -0.546 6.546 28 H 0.268 0.732 29 H 0.026 0.974 30 H 0.022 0.978 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.431 0.569 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.139 0.861 42 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.311 -8.631 -1.282 36.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.172 1.172 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.054 0.946 9 C -0.042 4.042 10 C -0.138 4.138 11 C -0.750 4.750 12 S 2.724 3.276 13 O -0.965 6.965 14 O -0.970 6.970 15 N -0.852 5.852 16 C 0.019 3.981 17 H 0.154 0.846 18 C -0.118 4.118 19 C -0.137 4.137 20 C -0.102 4.102 21 C -0.160 4.160 22 C -0.112 4.112 23 C -0.177 4.177 24 C 0.043 3.957 25 N -0.291 5.291 26 C 0.284 3.716 27 O -0.421 6.421 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.268 0.732 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.169 0.831 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 34.086 -9.020 -0.798 35.268 hybrid contribution -0.125 1.988 -0.482 2.050 sum 33.961 -7.032 -1.280 34.705 Atomic orbital electron populations 1.70062 1.08216 1.28301 1.52238 1.26011 0.95676 1.03513 0.93925 0.85660 0.79455 0.78246 0.79319 1.19155 1.17170 1.20449 1.21512 0.91936 0.93519 1.50999 0.94578 1.19464 0.94035 0.93547 0.97144 1.21155 0.89760 1.00432 1.02463 1.30665 1.06341 1.24775 1.13253 1.04376 0.73104 0.76875 0.73292 1.93554 1.83461 1.73070 1.46418 1.93560 1.83309 1.74102 1.46016 1.55397 1.25281 1.76416 1.28070 1.21182 0.98970 0.87389 0.90527 0.84632 1.20851 0.88928 1.03285 0.98693 1.19565 1.00543 0.93254 1.00306 1.21172 0.93206 0.99596 0.96225 1.21473 1.00000 0.96971 0.97581 1.21303 0.97479 0.93258 0.99156 1.21015 0.96762 1.01890 0.98080 1.17851 0.91129 0.90004 0.96701 1.43493 1.22267 1.11978 1.51370 1.21529 0.80191 0.92668 0.77192 1.90843 1.45369 1.56469 1.49459 0.92309 0.95555 0.95953 0.91428 0.91306 0.83969 0.83718 0.73164 0.86564 0.85891 0.83115 0.83622 0.83557 0.84326 0.74438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16 2 C 0.01 0.36 5.47 84.65 0.46 0.82 16 3 Si 0.95 45.89 27.47 68.60 1.88 47.77 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.54 -32.73 9.66 25.60 0.25 -32.48 16 8 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 9 C 0.00 -0.17 4.04 29.85 0.12 -0.05 16 10 C -0.10 -4.12 5.16 30.60 0.16 -3.96 16 11 C -0.62 -19.74 5.62 71.98 0.40 -19.33 16 12 S 2.63 74.10 5.44 -56.49 -0.31 73.80 16 13 O -0.98 -32.27 17.39 -127.65 -2.22 -34.49 16 14 O -0.98 -32.74 18.08 -127.65 -2.31 -35.05 16 15 N -1.09 -20.38 5.32 -172.82 -0.92 -21.30 16 16 C 0.13 2.21 2.95 44.18 0.13 2.34 16 17 H 0.14 2.37 7.47 -2.39 -0.02 2.35 16 18 C -0.08 -0.79 5.57 29.78 0.17 -0.62 16 19 C -0.13 -1.42 5.23 -19.79 -0.10 -1.52 16 20 C -0.08 -0.62 9.68 22.25 0.22 -0.41 16 21 C -0.14 -0.95 10.04 22.29 0.22 -0.73 16 22 C -0.09 -0.70 10.04 22.25 0.22 -0.48 16 23 C -0.16 -1.54 9.90 22.39 0.22 -1.32 16 24 C 0.14 1.73 6.54 38.17 0.25 1.98 16 25 N -0.65 -9.90 5.35 -304.25 -1.63 -11.52 16 26 C 0.50 10.21 6.96 87.68 0.61 10.82 16 27 O -0.55 -15.59 15.83 -3.03 -0.05 -15.63 16 28 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 29 H 0.03 1.25 7.20 -2.39 -0.02 1.24 16 30 H 0.02 1.08 7.57 -2.38 -0.02 1.06 16 31 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.14 3.99 8.14 -2.39 -0.02 3.97 16 34 H 0.14 4.57 6.09 -2.39 -0.01 4.56 16 35 H 0.43 6.29 8.42 -96.74 -0.81 5.47 16 36 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.12 0.81 8.06 -2.39 -0.02 0.79 16 38 H 0.15 0.47 8.06 -2.91 -0.02 0.44 16 39 H 0.15 0.37 8.06 -2.91 -0.02 0.35 16 40 H 0.15 0.49 8.06 -2.91 -0.02 0.47 16 41 H 0.14 0.98 8.06 -2.91 -0.02 0.95 16 42 H 0.42 5.51 8.80 -92.70 -0.82 4.69 16 Total: -1.00 -83.84 361.17 -2.53 -86.38 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -0.62 Total: 15.80 kcal Atomic # 6 Polarization: -48.27 SS G_CDS: 3.33 Total: -44.94 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -2.25 Total: -93.63 kcal Atomic # 8 Polarization: -80.60 SS G_CDS: -4.58 Total: -85.18 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.77 kcal Atomic # 16 Polarization: 74.10 SS G_CDS: -0.31 Total: 73.80 kcal Total: -83.84 -2.53 -86.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599458025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.868 kcal (2) G-P(sol) polarization free energy of solvation -83.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds