Wall clock time and date at job start Tue Mar 31 2020 21:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00153 * 2 1 4 4 H 1.48500 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47038 * 299.99891 * 3 2 1 6 6 H 1.48500 * 109.47110 * 59.99722 * 3 2 1 7 7 C 1.37877 * 119.99630 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99811 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00421 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47505 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00231 * 169.99435 * 10 9 7 12 12 C 1.53239 * 109.34051 * 187.24990 * 11 10 9 13 13 N 1.47083 * 108.52395 * 306.17598 * 12 11 10 14 14 C 1.34774 * 120.87835 * 231.18474 * 13 12 11 15 15 O 1.21776 * 120.00329 * 5.67669 * 14 13 12 16 16 C 1.41719 * 119.99692 * 185.67165 * 14 13 12 17 17 S 1.75664 * 125.10035 * 42.35142 * 16 14 13 18 18 C 1.75560 * 91.20941 * 180.02562 * 17 16 14 19 19 C 1.34196 * 110.68292 * 359.61957 * 18 17 16 20 20 C 1.37152 * 125.10645 * 222.03839 * 16 14 13 21 21 O 1.37656 * 124.47815 * 0.21592 * 20 16 14 22 22 C 1.43382 * 114.50216 * 163.28189 * 21 20 16 23 23 C 1.53222 * 109.13155 * 46.52869 * 22 21 20 24 24 O 1.38243 * 124.14826 * 180.47875 * 19 18 17 25 25 C 1.47079 * 118.23756 * 51.45549 * 13 12 11 26 26 C 1.46900 * 110.99828 * 294.30319 * 10 9 7 27 27 H 0.96997 * 119.99715 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47512 * 59.99579 * 9 7 2 29 29 H 1.09007 * 109.46880 * 299.99058 * 9 7 2 30 30 H 1.09003 * 109.48835 * 67.29832 * 11 10 9 31 31 H 1.08994 * 109.51404 * 307.22715 * 11 10 9 32 32 H 1.08991 * 109.63205 * 186.46180 * 12 11 10 33 33 H 1.09000 * 109.62775 * 65.88272 * 12 11 10 34 34 H 1.07999 * 124.65747 * 179.88689 * 18 17 16 35 35 H 1.09002 * 109.52769 * 166.42283 * 22 21 20 36 36 H 1.09000 * 109.52402 * 286.55733 * 22 21 20 37 37 H 1.09001 * 109.52291 * 57.63559 * 23 22 21 38 38 H 1.08999 * 109.51986 * 177.82795 * 23 22 21 39 39 H 1.09000 * 109.63308 * 68.24977 * 25 13 12 40 40 H 1.09002 * 109.63125 * 188.83816 * 25 13 12 41 41 H 1.09004 * 109.48923 * 292.70215 * 26 10 9 42 42 H 1.08991 * 109.49654 * 52.77865 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5211 -4.8935 0.2388 12 6 2.5636 -6.0033 0.4115 13 7 3.4614 -5.9863 -0.7534 14 6 3.7117 -7.1125 -1.4503 15 8 3.1137 -8.1392 -1.1834 16 6 4.6706 -7.1017 -2.4937 17 16 6.2335 -6.3030 -2.4210 18 6 6.6203 -6.8301 -4.0503 19 6 5.6168 -7.5583 -4.5637 20 6 4.5204 -7.7184 -3.7095 21 8 3.4072 -8.4345 -4.0877 22 6 3.3005 -8.6664 -5.4986 23 6 4.6540 -9.1467 -6.0324 24 8 5.6329 -8.1201 -5.8267 25 6 4.0836 -4.7091 -1.1339 26 6 2.9766 -3.6492 -1.2494 27 1 -0.4849 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5568 0.8904 30 1 0.8795 -5.1264 -0.6111 31 1 0.9157 -4.8194 1.1421 32 1 2.0631 -6.9694 0.4740 33 1 3.1394 -5.8266 1.3200 34 1 7.5413 -6.6033 -4.5667 35 1 2.5437 -9.4281 -5.6864 36 1 3.0177 -7.7406 -5.9996 37 1 4.9561 -10.0488 -5.5003 38 1 4.5699 -9.3619 -7.0976 39 1 4.8026 -4.4103 -0.3711 40 1 4.5884 -4.8193 -2.0938 41 1 2.3147 -3.8994 -2.0785 42 1 3.4270 -2.6723 -1.4251 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602198682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:15 Heat of formation + Delta-G solvation = -44.713038 kcal Electronic energy + Delta-G solvation = -27389.562465 eV Core-core repulsion = 23463.059464 eV Total energy + Delta-G solvation = -3926.503001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.32935 -39.92657 -37.61279 -37.20442 -35.84967 -34.39607 -32.46903 -31.14992 -30.17107 -29.79865 -28.16111 -25.90005 -24.61483 -24.06898 -23.26560 -22.11247 -21.00764 -19.76070 -19.58166 -18.37548 -17.46141 -17.21155 -16.58140 -16.35192 -15.97224 -15.56091 -15.14436 -15.01337 -14.73301 -14.66302 -14.57073 -14.36752 -13.91397 -13.65140 -13.55995 -13.36884 -12.99291 -12.72835 -12.30533 -11.90301 -11.59545 -11.42082 -11.35122 -11.29116 -11.09172 -11.02719 -10.88984 -10.73903 -10.60564 -10.51393 -9.92689 -9.80938 -9.26882 -8.82163 -8.50559 -8.40611 -8.15700 -7.32584 -6.06615 -4.08566 0.25700 1.04668 1.34343 1.99260 2.76954 2.95293 3.21501 3.28466 3.34289 3.36239 3.40158 3.79439 4.19378 4.38666 4.48795 4.52086 4.78905 4.84929 4.92295 5.04028 5.13640 5.19651 5.27171 5.30861 5.40989 5.54558 5.65902 5.68565 5.76624 5.89863 6.04019 6.29355 6.32337 6.45565 6.48267 6.69016 6.76287 7.21894 7.28514 7.50740 7.74401 8.01161 8.11871 8.22295 8.47331 8.98949 9.56023 11.04277 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016191 B = 0.002987 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.889710 B = 9370.554204 C = 9828.548944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.041 3.959 12 C 0.120 3.880 13 N -0.603 5.603 14 C 0.592 3.408 15 O -0.529 6.529 16 C -0.271 4.271 17 S 0.238 5.762 18 C -0.226 4.226 19 C 0.037 3.963 20 C 0.116 3.884 21 O -0.270 6.270 22 C 0.013 3.987 23 C 0.019 3.981 24 O -0.292 6.292 25 C 0.098 3.902 26 C 0.054 3.946 27 H 0.261 0.739 28 H -0.009 1.009 29 H 0.032 0.968 30 H 0.027 0.973 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.181 0.819 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.025 0.975 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.487 -16.887 -10.881 23.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.260 5.260 11 C -0.088 4.088 12 C -0.002 4.002 13 N -0.337 5.337 14 C 0.380 3.620 15 O -0.408 6.408 16 C -0.391 4.391 17 S 0.502 5.498 18 C -0.363 4.363 19 C -0.019 4.019 20 C 0.055 3.945 21 O -0.183 6.183 22 C -0.063 4.063 23 C -0.057 4.057 24 O -0.208 6.208 25 C -0.026 4.026 26 C -0.075 4.075 27 H 0.071 0.929 28 H 0.009 0.991 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.199 0.801 35 H 0.144 0.856 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.142 0.858 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.043 0.957 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.063 -16.414 -9.289 22.942 hybrid contribution -1.068 -0.011 -2.028 2.292 sum 11.996 -16.425 -11.317 23.276 Atomic orbital electron populations 1.69969 1.06105 1.26736 1.50880 1.25001 0.94860 0.99375 0.95389 0.86443 0.80072 0.83398 0.77517 1.19579 1.21147 1.21011 1.21178 0.93517 0.89831 1.50193 0.91695 1.19735 0.90007 0.87165 0.96253 1.62083 1.28085 1.02745 1.33131 1.22401 0.94949 0.90480 1.01011 1.21784 0.91688 0.99738 0.86996 1.48131 1.47024 1.08161 1.30379 1.15571 0.81756 0.83790 0.80853 1.90833 1.50831 1.31711 1.67427 1.22458 1.03923 1.12539 1.00173 1.84384 1.07196 1.49402 1.08854 1.25063 1.03231 1.07469 1.00503 1.18189 0.93900 1.02270 0.87582 1.18776 0.87414 0.95135 0.93188 1.87121 1.38855 1.68502 1.23856 1.23724 0.98555 1.03535 0.80488 1.23612 0.87842 0.90271 1.03996 1.87044 1.55692 1.52011 1.26009 1.22411 0.96560 0.82747 1.00869 1.22373 0.94911 0.98812 0.91446 0.92934 0.99115 0.94970 0.95472 0.89934 0.89234 0.90668 0.80149 0.85647 0.90175 0.90376 0.85780 0.90156 0.89914 0.95662 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -13.79 8.41 -34.44 -0.29 -14.08 16 8 H 0.06 1.72 7.13 -52.48 -0.37 1.34 16 9 C 0.19 4.92 4.72 -4.98 -0.02 4.89 16 10 N -0.54 -11.21 4.62 -235.47 -1.09 -12.29 16 11 C 0.04 0.75 5.62 -3.70 -0.02 0.73 16 12 C 0.12 1.94 6.61 -3.60 -0.02 1.92 16 13 N -0.60 -9.82 3.00 -175.55 -0.53 -10.35 16 14 C 0.59 10.12 7.25 -14.93 -0.11 10.01 16 15 O -0.53 -10.58 16.19 4.90 0.08 -10.50 16 16 C -0.27 -3.93 5.15 -38.65 -0.20 -4.13 16 17 S 0.24 2.50 20.21 -107.50 -2.17 0.32 16 18 C -0.23 -2.22 11.17 29.31 0.33 -1.89 16 19 C 0.04 0.43 6.55 -40.38 -0.26 0.17 16 20 C 0.12 1.61 6.55 -39.35 -0.26 1.35 16 21 O -0.27 -3.80 10.32 -37.41 -0.39 -4.18 16 22 C 0.01 0.11 7.14 37.27 0.27 0.38 16 23 C 0.02 0.14 7.14 37.27 0.27 0.41 16 24 O -0.29 -3.06 10.77 -35.39 -0.38 -3.44 16 25 C 0.10 1.48 5.67 -3.36 -0.02 1.46 16 26 C 0.05 1.01 5.47 -3.46 -0.02 0.99 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 29 H 0.03 0.88 7.97 -51.92 -0.41 0.46 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 1.45 7.99 -51.93 -0.41 1.03 16 32 H 0.09 1.44 7.04 -51.93 -0.37 1.07 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.13 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.08 1.10 4.77 -39.81 -0.19 0.91 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.10 1.92 6.67 -51.93 -0.35 1.57 16 LS Contribution 353.36 15.07 5.33 5.33 Total: -1.00 -34.10 353.36 -9.36 -43.47 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -5.47 Total: -2.50 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -0.46 Total: 3.64 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.88 Total: -48.18 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.69 Total: -18.12 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.17 Total: 0.32 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.10 -9.36 -43.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602198682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.246 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds