Wall clock time and date at job start Tue Mar 31 2020 21:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00153 * 2 1 4 4 H 1.48500 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47038 * 299.99891 * 3 2 1 6 6 H 1.48500 * 109.47110 * 59.99722 * 3 2 1 7 7 C 1.37877 * 119.99630 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99811 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00421 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47505 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00231 * 169.99435 * 10 9 7 12 12 C 1.53239 * 109.34051 * 187.24990 * 11 10 9 13 13 N 1.47083 * 108.52395 * 306.17598 * 12 11 10 14 14 C 1.34774 * 120.87835 * 231.18474 * 13 12 11 15 15 O 1.21776 * 120.00329 * 5.67669 * 14 13 12 16 16 C 1.41719 * 119.99692 * 185.67165 * 14 13 12 17 17 S 1.75664 * 125.10035 * 42.35142 * 16 14 13 18 18 C 1.75560 * 91.20941 * 180.02562 * 17 16 14 19 19 C 1.34196 * 110.68292 * 359.61957 * 18 17 16 20 20 C 1.37152 * 125.10645 * 222.03839 * 16 14 13 21 21 O 1.37656 * 124.47815 * 0.21592 * 20 16 14 22 22 C 1.43382 * 114.50216 * 163.28189 * 21 20 16 23 23 C 1.53222 * 109.13155 * 46.52869 * 22 21 20 24 24 O 1.38243 * 124.14826 * 180.47875 * 19 18 17 25 25 C 1.47079 * 118.23756 * 51.45549 * 13 12 11 26 26 C 1.46900 * 110.99828 * 294.30319 * 10 9 7 27 27 H 0.96997 * 119.99715 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47512 * 59.99579 * 9 7 2 29 29 H 1.09007 * 109.46880 * 299.99058 * 9 7 2 30 30 H 1.09003 * 109.48835 * 67.29832 * 11 10 9 31 31 H 1.08994 * 109.51404 * 307.22715 * 11 10 9 32 32 H 1.08991 * 109.63205 * 186.46180 * 12 11 10 33 33 H 1.09000 * 109.62775 * 65.88272 * 12 11 10 34 34 H 1.07999 * 124.65747 * 179.88689 * 18 17 16 35 35 H 1.09002 * 109.52769 * 166.42283 * 22 21 20 36 36 H 1.09000 * 109.52402 * 286.55733 * 22 21 20 37 37 H 1.09001 * 109.52291 * 57.63559 * 23 22 21 38 38 H 1.08999 * 109.51986 * 177.82795 * 23 22 21 39 39 H 1.09000 * 109.63308 * 68.24977 * 25 13 12 40 40 H 1.09002 * 109.63125 * 188.83816 * 25 13 12 41 41 H 1.09004 * 109.48923 * 292.70215 * 26 10 9 42 42 H 1.08991 * 109.49654 * 52.77865 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5211 -4.8935 0.2388 12 6 2.5636 -6.0033 0.4115 13 7 3.4614 -5.9863 -0.7534 14 6 3.7117 -7.1125 -1.4503 15 8 3.1137 -8.1392 -1.1834 16 6 4.6706 -7.1017 -2.4937 17 16 6.2335 -6.3030 -2.4210 18 6 6.6203 -6.8301 -4.0503 19 6 5.6168 -7.5583 -4.5637 20 6 4.5204 -7.7184 -3.7095 21 8 3.4072 -8.4345 -4.0877 22 6 3.3005 -8.6664 -5.4986 23 6 4.6540 -9.1467 -6.0324 24 8 5.6329 -8.1201 -5.8267 25 6 4.0836 -4.7091 -1.1339 26 6 2.9766 -3.6492 -1.2494 27 1 -0.4849 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5568 0.8904 30 1 0.8795 -5.1264 -0.6111 31 1 0.9157 -4.8194 1.1421 32 1 2.0631 -6.9694 0.4740 33 1 3.1394 -5.8266 1.3200 34 1 7.5413 -6.6033 -4.5667 35 1 2.5437 -9.4281 -5.6864 36 1 3.0177 -7.7406 -5.9996 37 1 4.9561 -10.0488 -5.5003 38 1 4.5699 -9.3619 -7.0976 39 1 4.8026 -4.4103 -0.3711 40 1 4.5884 -4.8193 -2.0938 41 1 2.3147 -3.8994 -2.0785 42 1 3.4270 -2.6723 -1.4251 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602198682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:15 Heat of formation + Delta-G solvation = -69.892192 kcal Electronic energy + Delta-G solvation = -27390.654315 eV Core-core repulsion = 23463.059464 eV Total energy + Delta-G solvation = -3927.594851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.19099 -41.19949 -39.05849 -38.10572 -36.72740 -36.02376 -34.43523 -32.52027 -31.00036 -30.79530 -29.84389 -27.48485 -25.83983 -24.86036 -24.65007 -23.77882 -22.40699 -20.96062 -20.43804 -19.49587 -18.49296 -18.37098 -18.26394 -17.53140 -16.99531 -16.74206 -16.56784 -16.08052 -16.04297 -15.86049 -15.67097 -15.47388 -15.36753 -15.31219 -14.68690 -14.43853 -14.20436 -13.98528 -13.75910 -13.44909 -13.07464 -12.81999 -12.63987 -12.57746 -12.43414 -12.30481 -12.15304 -12.08150 -11.99223 -11.82615 -11.71990 -11.26661 -11.15255 -10.61587 -9.93212 -9.63549 -9.10178 -8.99323 -8.19044 -6.29423 -0.67931 0.16341 0.51503 1.09521 1.44775 1.45680 1.59106 1.62478 1.93781 2.25231 2.42687 2.47267 3.01591 3.12948 3.20528 3.46636 3.68522 3.89219 3.91844 3.97893 4.00789 4.18293 4.19233 4.25313 4.37452 4.39270 4.48777 4.52683 4.57707 4.68392 4.79063 4.86709 4.89953 4.96543 5.17253 5.21163 5.38299 5.57621 5.65360 5.94759 6.02012 6.16301 6.30246 6.53328 6.86555 6.93748 7.40692 8.92732 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016191 B = 0.002987 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.889710 B = 9370.554204 C = 9828.548944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.001 4.001 3 Si 0.972 3.028 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.073 0.927 9 C 0.208 3.792 10 N -0.535 5.535 11 C 0.043 3.957 12 C 0.128 3.872 13 N -0.607 5.607 14 C 0.594 3.406 15 O -0.570 6.570 16 C -0.321 4.321 17 S 0.284 5.716 18 C -0.202 4.202 19 C 0.017 3.983 20 C 0.112 3.888 21 O -0.305 6.305 22 C 0.004 3.996 23 C 0.019 3.981 24 O -0.299 6.299 25 C 0.109 3.891 26 C 0.054 3.946 27 H 0.263 0.737 28 H -0.043 1.043 29 H 0.007 0.993 30 H 0.010 0.990 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.215 0.785 35 H 0.151 0.849 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.162 0.838 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.008 0.992 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.610 -16.683 -12.022 25.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.179 1.179 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.091 0.909 9 C 0.082 3.918 10 N -0.259 5.259 11 C -0.086 4.086 12 C 0.006 3.994 13 N -0.340 5.340 14 C 0.384 3.616 15 O -0.451 6.451 16 C -0.441 4.441 17 S 0.548 5.452 18 C -0.339 4.339 19 C -0.039 4.039 20 C 0.050 3.950 21 O -0.219 6.219 22 C -0.071 4.071 23 C -0.057 4.057 24 O -0.215 6.215 25 C -0.014 4.014 26 C -0.075 4.075 27 H 0.072 0.928 28 H -0.025 1.025 29 H 0.025 0.975 30 H 0.028 0.972 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.231 0.769 35 H 0.168 0.832 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.180 0.820 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.027 0.973 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.209 -16.221 -10.437 25.195 hybrid contribution -2.071 -0.159 -1.759 2.722 sum 14.138 -16.379 -12.197 24.838 Atomic orbital electron populations 1.70111 1.07961 1.27840 1.51917 1.25962 0.95692 1.03402 0.94803 0.85294 0.79333 0.78327 0.77433 1.17913 1.20761 1.20777 1.21493 0.93955 0.90501 1.49805 0.90915 1.19398 0.90087 0.88944 0.93413 1.62035 1.26984 1.02535 1.34374 1.22438 0.95576 0.90058 1.00499 1.21692 0.91361 0.98509 0.87870 1.48205 1.46965 1.08507 1.30313 1.15893 0.81671 0.83149 0.80865 1.90793 1.52615 1.33022 1.68699 1.22444 1.05859 1.15695 1.00064 1.84100 1.04197 1.48003 1.08900 1.25537 1.03552 1.04927 0.99921 1.18249 0.93785 1.03665 0.88162 1.19135 0.87964 0.94381 0.93497 1.87061 1.39471 1.68509 1.26896 1.24082 1.00381 1.04508 0.78155 1.23866 0.86234 0.89380 1.06186 1.87027 1.56581 1.52734 1.25189 1.22408 0.95218 0.80920 1.02817 1.22406 0.95330 0.99969 0.89792 0.92784 1.02546 0.97507 0.97161 0.89483 0.89215 0.88897 0.76853 0.83184 0.90120 0.90208 0.82045 0.88224 0.87747 0.97344 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.07 13.29 21.45 0.28 -55.78 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 3 Si 0.97 42.95 29.54 68.60 2.03 44.98 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.52 -28.42 8.41 25.60 0.22 -28.20 16 8 H 0.07 3.79 7.13 -2.91 -0.02 3.77 16 9 C 0.21 10.99 4.72 85.56 0.40 11.39 16 10 N -0.53 -22.78 4.62 -898.88 -4.15 -26.93 16 11 C 0.04 1.64 5.62 86.38 0.49 2.12 16 12 C 0.13 4.13 6.61 86.35 0.57 4.70 16 13 N -0.61 -19.55 3.00 -827.50 -2.49 -22.04 16 14 C 0.59 20.39 7.25 85.10 0.62 21.00 16 15 O -0.57 -23.39 16.19 -4.38 -0.07 -23.47 16 16 C -0.32 -9.09 5.15 22.87 0.12 -8.98 16 17 S 0.28 5.22 20.21 -56.49 -1.14 4.08 16 18 C -0.20 -3.32 11.17 66.90 0.75 -2.58 16 19 C 0.02 0.37 6.55 21.75 0.14 0.51 16 20 C 0.11 3.06 6.55 22.42 0.15 3.21 16 21 O -0.31 -8.67 10.32 -101.78 -1.05 -9.72 16 22 C 0.00 0.06 7.14 72.06 0.51 0.57 16 23 C 0.02 0.24 7.14 72.06 0.51 0.75 16 24 O -0.30 -5.59 10.77 -113.00 -1.22 -6.81 16 25 C 0.11 3.16 5.67 86.50 0.49 3.65 16 26 C 0.05 2.03 5.47 86.54 0.47 2.50 16 27 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 28 H -0.04 -2.53 8.12 -2.39 -0.02 -2.55 16 29 H 0.01 0.39 7.97 -2.38 -0.02 0.37 16 30 H 0.01 0.41 8.14 -2.39 -0.02 0.40 16 31 H 0.09 3.16 7.99 -2.39 -0.02 3.14 16 32 H 0.09 2.93 7.04 -2.39 -0.02 2.91 16 33 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.21 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.15 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.16 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.10 2.55 8.14 -2.39 -0.02 2.54 16 40 H 0.10 2.58 4.77 -10.09 -0.05 2.54 16 41 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.09 3.60 6.67 -2.39 -0.02 3.58 16 Total: -1.00 -76.49 353.36 -0.89 -77.38 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.01 Total: 7.21 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 5.90 Total: 11.08 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -6.35 Total: -104.75 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -2.34 Total: -39.99 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 5.22 SS G_CDS: -1.14 Total: 4.08 kcal Total: -76.49 -0.89 -77.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602198682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.492 kcal (2) G-P(sol) polarization free energy of solvation -76.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds