Wall clock time and date at job start Tue Mar 31 2020 20:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47028 * 240.00373 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99982 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.35349 * 126.75364 * 94.71254 * 11 10 9 13 13 N 1.35313 * 106.17218 * 179.85517 * 12 11 10 14 14 C 1.46497 * 125.86667 * 180.18574 * 13 12 11 15 15 C 1.50702 * 109.47236 * 125.29282 * 14 13 12 16 16 C 1.38287 * 119.98374 * 264.72969 * 15 14 13 17 17 C 1.38215 * 120.13951 * 179.77378 * 16 15 14 18 18 C 1.38281 * 120.14511 * 0.46213 * 17 16 15 19 19 C 1.38506 * 120.02668 * 359.79855 * 18 17 16 20 20 C 1.38501 * 119.98842 * 85.00011 * 15 14 13 21 21 O 1.36500 * 131.53519 * 0.02562 * 20 15 14 22 22 C 1.43983 * 105.48488 * 197.25838 * 21 20 15 23 23 F 1.39903 * 110.56876 * 91.44714 * 22 21 20 24 24 F 1.39906 * 110.57151 * 214.16218 * 22 21 20 25 25 O 1.36495 * 131.53894 * 179.97438 * 19 18 17 26 26 N 1.28710 * 108.26491 * 0.41269 * 13 12 11 27 27 N 1.28635 * 110.18134 * 359.73681 * 26 13 12 28 28 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 31 31 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 32 32 H 1.08001 * 126.90852 * 0.02562 * 12 11 10 33 33 H 1.08997 * 109.47505 * 245.29001 * 14 13 12 34 34 H 1.09004 * 109.47427 * 5.29359 * 14 13 12 35 35 H 1.08004 * 119.92813 * 359.97222 * 16 15 14 36 36 H 1.07995 * 119.92301 * 180.26006 * 17 16 15 37 37 H 1.07997 * 119.98325 * 179.77681 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0787 -4.8022 -0.0001 12 6 0.6206 -5.4755 -1.0812 13 7 -0.2300 -6.4152 -0.6074 14 6 -0.9686 -7.3895 -1.4144 15 6 -0.6787 -8.7805 -0.9123 16 6 0.3116 -9.5386 -1.5099 17 6 0.5833 -10.8129 -1.0490 18 6 -0.1402 -11.3390 0.0054 19 6 -1.1371 -10.5875 0.6053 20 6 -1.4078 -9.3013 0.1438 21 8 -2.4221 -8.7746 0.8902 22 6 -2.4926 -9.5915 2.0737 23 9 -1.6892 -9.0585 3.0875 24 9 -3.8165 -9.7118 2.5098 25 8 -1.9813 -10.8659 1.6411 26 7 -0.2823 -6.3028 0.6737 27 7 0.4869 -5.3498 1.0674 28 1 -0.4849 0.8400 -0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.6847 -3.7145 -0.8895 31 1 2.6847 -3.7145 0.8905 32 1 0.8834 -5.2999 -2.1139 33 1 -2.0374 -7.1905 -1.3362 34 1 -0.6591 -7.3075 -2.4564 35 1 0.8759 -9.1327 -2.3365 36 1 1.3603 -11.4003 -1.5156 37 1 0.0719 -12.3364 0.3611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603248224.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:51 Heat of formation + Delta-G solvation = -13.027273 kcal Electronic energy + Delta-G solvation = -28496.326547 eV Core-core repulsion = 23913.816814 eV Total energy + Delta-G solvation = -4582.509733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -49.74007 -48.18901 -43.01926 -42.63284 -38.74823 -37.45673 -35.39540 -34.41458 -31.92071 -31.54838 -30.43783 -29.82991 -27.38596 -25.75699 -25.61880 -23.97652 -23.17694 -22.75319 -21.54541 -20.56992 -19.56727 -19.54185 -19.07926 -18.00493 -17.32548 -16.93734 -16.38669 -16.15351 -15.96747 -15.33817 -15.04095 -14.92076 -14.70639 -14.55920 -14.45010 -14.28712 -14.22229 -14.15098 -13.73342 -13.54311 -13.20700 -13.08075 -12.68858 -12.55392 -12.44352 -11.97959 -11.84978 -11.19101 -10.87412 -10.77422 -10.42048 -10.11141 -9.88796 -9.69388 -9.56502 -9.05755 -8.85667 -8.80467 -6.89201 -5.71263 -3.00958 0.32508 0.38542 1.28222 1.78548 1.85215 2.40855 2.95006 3.01060 3.47912 3.50360 3.51934 3.52193 3.53555 3.63980 3.91785 4.24790 4.33484 4.43006 4.45318 4.63430 4.66804 4.77989 4.86865 5.15466 5.28273 5.33428 5.49526 5.53786 5.55908 5.65310 5.66135 5.87156 6.20316 6.20702 6.43539 6.68300 6.75188 6.81691 7.72838 8.45997 8.88396 9.57596 10.13703 10.49627 11.51465 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.019427 B = 0.002537 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.953717 B =11035.327517 C =11888.767422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.726 5.726 10 C 0.233 3.767 11 C -0.005 4.005 12 C -0.044 4.044 13 N -0.301 5.301 14 C 0.162 3.838 15 C -0.081 4.081 16 C -0.078 4.078 17 C -0.104 4.104 18 C -0.071 4.071 19 C 0.021 3.979 20 C 0.067 3.933 21 O -0.275 6.275 22 C 0.572 3.428 23 F -0.145 7.145 24 F -0.117 7.117 25 O -0.289 6.289 26 N -0.088 5.088 27 N -0.253 5.253 28 H 0.256 0.744 29 H 0.386 0.614 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.190 0.810 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.290 -28.753 -6.273 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.371 5.371 10 C 0.104 3.896 11 C -0.143 4.143 12 C -0.194 4.194 13 N -0.095 5.095 14 C 0.041 3.959 15 C -0.083 4.083 16 C -0.097 4.097 17 C -0.122 4.122 18 C -0.089 4.089 19 C -0.022 4.022 20 C 0.022 3.978 21 O -0.194 6.194 22 C 0.464 3.536 23 F -0.126 7.126 24 F -0.098 7.098 25 O -0.208 6.208 26 N -0.067 5.067 27 N -0.120 5.120 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.207 0.793 33 H 0.127 0.873 34 H 0.141 0.859 35 H 0.167 0.833 36 H 0.168 0.832 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.047 -29.166 -4.848 29.723 hybrid contribution 0.071 1.351 -0.595 1.478 sum -2.976 -27.815 -5.443 28.499 Atomic orbital electron populations 1.69673 1.05180 1.25754 1.57454 1.24761 0.95512 0.97712 1.02921 0.86233 0.78463 0.83414 0.77851 1.21249 1.21747 1.21191 1.19189 0.91057 0.83851 1.43054 0.90945 1.42305 1.05991 0.99257 1.89520 1.18941 0.90049 0.81397 0.99206 1.22489 1.02554 1.00793 0.88441 1.23415 0.98786 0.95119 1.02067 1.47250 1.31110 1.24257 1.06858 1.20758 0.98347 0.82365 0.94443 1.18791 0.96763 0.96112 0.96638 1.21038 0.95052 0.93932 0.99669 1.21029 0.99748 0.95675 0.95741 1.20238 0.91747 1.00745 0.96202 1.19566 0.95689 0.94595 0.92385 1.19295 0.90488 0.91673 0.96319 1.87702 1.49207 1.52927 1.29552 1.21849 0.75722 0.76695 0.79333 1.93329 1.73280 1.85422 1.60595 1.93255 1.32435 1.94973 1.89131 1.87617 1.58069 1.27177 1.47987 1.78331 1.19263 1.16759 0.92320 1.75132 1.06492 1.04102 1.26316 0.93464 0.78093 0.94494 0.94394 0.79286 0.87252 0.85872 0.83315 0.83221 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -19.22 5.59 -61.08 -0.34 -19.56 16 10 C 0.23 4.94 6.82 -5.20 -0.04 4.90 16 11 C -0.01 -0.10 6.61 -82.78 -0.55 -0.65 16 12 C -0.04 -0.65 11.50 -17.05 -0.20 -0.84 16 13 N -0.30 -4.22 3.43 -62.44 -0.21 -4.44 16 14 C 0.16 1.44 6.58 -5.19 -0.03 1.41 16 15 C -0.08 -0.72 5.26 -104.51 -0.55 -1.27 16 16 C -0.08 -0.46 9.67 -39.57 -0.38 -0.84 16 17 C -0.10 -0.52 10.04 -39.57 -0.40 -0.92 16 18 C -0.07 -0.47 10.06 -39.47 -0.40 -0.87 16 19 C 0.02 0.22 7.15 -39.09 -0.28 -0.06 16 20 C 0.07 0.75 6.82 -39.09 -0.27 0.48 16 21 O -0.28 -3.59 11.34 -45.69 -0.52 -4.11 16 22 C 0.57 7.12 3.69 101.05 0.37 7.50 16 23 F -0.14 -2.02 17.57 2.25 0.04 -1.98 16 24 F -0.12 -1.37 17.57 2.25 0.04 -1.33 16 25 O -0.29 -3.26 11.34 -45.67 -0.52 -3.78 16 26 N -0.09 -1.61 12.91 60.35 0.78 -0.83 16 27 N -0.25 -5.32 12.41 33.29 0.41 -4.91 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.39 11.03 7.66 -40.82 -0.31 10.72 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.19 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.11 0.96 8.12 -51.93 -0.42 0.54 16 34 H 0.12 0.56 7.98 -51.93 -0.41 0.15 16 35 H 0.15 0.46 8.06 -52.48 -0.42 0.03 16 36 H 0.15 0.28 8.06 -52.49 -0.42 -0.14 16 37 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -36.78 344.21 -5.62 -42.40 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -3.23 Total: 2.62 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -2.96 Total: 1.36 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 1.36 Total: -58.02 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -1.04 Total: -7.89 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.08 Total: -3.31 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.78 -5.62 -42.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603248224.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.375 kcal (2) G-P(sol) polarization free energy of solvation -36.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds