Wall clock time and date at job start Tue Mar 31 2020 20:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47028 * 240.00373 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99982 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.35349 * 126.75364 * 94.71254 * 11 10 9 13 13 N 1.35313 * 106.17218 * 179.85517 * 12 11 10 14 14 C 1.46497 * 125.86667 * 180.18574 * 13 12 11 15 15 C 1.50702 * 109.47236 * 125.29282 * 14 13 12 16 16 C 1.38287 * 119.98374 * 264.72969 * 15 14 13 17 17 C 1.38215 * 120.13951 * 179.77378 * 16 15 14 18 18 C 1.38281 * 120.14511 * 0.46213 * 17 16 15 19 19 C 1.38506 * 120.02668 * 359.79855 * 18 17 16 20 20 C 1.38501 * 119.98842 * 85.00011 * 15 14 13 21 21 O 1.36500 * 131.53519 * 0.02562 * 20 15 14 22 22 C 1.43983 * 105.48488 * 197.25838 * 21 20 15 23 23 F 1.39903 * 110.56876 * 91.44714 * 22 21 20 24 24 F 1.39906 * 110.57151 * 214.16218 * 22 21 20 25 25 O 1.36495 * 131.53894 * 179.97438 * 19 18 17 26 26 N 1.28710 * 108.26491 * 0.41269 * 13 12 11 27 27 N 1.28635 * 110.18134 * 359.73681 * 26 13 12 28 28 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 31 31 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 32 32 H 1.08001 * 126.90852 * 0.02562 * 12 11 10 33 33 H 1.08997 * 109.47505 * 245.29001 * 14 13 12 34 34 H 1.09004 * 109.47427 * 5.29359 * 14 13 12 35 35 H 1.08004 * 119.92813 * 359.97222 * 16 15 14 36 36 H 1.07995 * 119.92301 * 180.26006 * 17 16 15 37 37 H 1.07997 * 119.98325 * 179.77681 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0787 -4.8022 -0.0001 12 6 0.6206 -5.4755 -1.0812 13 7 -0.2300 -6.4152 -0.6074 14 6 -0.9686 -7.3895 -1.4144 15 6 -0.6787 -8.7805 -0.9123 16 6 0.3116 -9.5386 -1.5099 17 6 0.5833 -10.8129 -1.0490 18 6 -0.1402 -11.3390 0.0054 19 6 -1.1371 -10.5875 0.6053 20 6 -1.4078 -9.3013 0.1438 21 8 -2.4221 -8.7746 0.8902 22 6 -2.4926 -9.5915 2.0737 23 9 -1.6892 -9.0585 3.0875 24 9 -3.8165 -9.7118 2.5098 25 8 -1.9813 -10.8659 1.6411 26 7 -0.2823 -6.3028 0.6737 27 7 0.4869 -5.3498 1.0674 28 1 -0.4849 0.8400 -0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.6847 -3.7145 -0.8895 31 1 2.6847 -3.7145 0.8905 32 1 0.8834 -5.2999 -2.1139 33 1 -2.0374 -7.1905 -1.3362 34 1 -0.6591 -7.3075 -2.4564 35 1 0.8759 -9.1327 -2.3365 36 1 1.3603 -11.4003 -1.5156 37 1 0.0719 -12.3364 0.3611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603248224.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:49 Heat of formation + Delta-G solvation = 22.078865 kcal Electronic energy + Delta-G solvation = -28494.804231 eV Core-core repulsion = 23913.816814 eV Total energy + Delta-G solvation = -4580.987417 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -50.17255 -48.60051 -43.72989 -41.73126 -40.11192 -37.07594 -36.71487 -36.40949 -34.67985 -32.62052 -30.64514 -29.36973 -29.08623 -26.70814 -26.50971 -25.45844 -23.03489 -22.92604 -22.63007 -21.95137 -21.14551 -19.66506 -19.14928 -18.95093 -18.72445 -18.28948 -17.39416 -17.12961 -16.62181 -16.28379 -16.14259 -15.98030 -15.50342 -15.44313 -15.37917 -14.94357 -14.83028 -14.71954 -14.45508 -14.37709 -14.06918 -14.06273 -13.87744 -13.71283 -13.40279 -13.08820 -12.45846 -12.30276 -12.10583 -11.96329 -11.61409 -11.49360 -11.28410 -11.14660 -10.89871 -10.84067 -10.22418 -10.01851 -8.20222 -8.02644 -3.88558 -1.58831 0.55554 0.84513 1.05836 1.29254 1.38123 1.68242 1.76628 1.96460 2.01113 2.12407 2.15503 2.49321 2.74392 3.22337 3.43681 3.55211 3.72697 3.81257 3.88039 4.01753 4.22928 4.34372 4.44337 4.67186 4.78942 4.85221 4.92761 5.06589 5.11054 5.21361 5.36713 5.48406 5.53804 5.73425 5.99855 6.15440 6.28001 6.79960 7.19473 7.31050 7.48632 7.58485 8.07652 8.35570 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.019427 B = 0.002537 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.953717 B =11035.327517 C =11888.767422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.091 4.091 3 Si 1.048 2.952 4 H -0.215 1.215 5 H -0.274 1.274 6 H -0.223 1.223 7 C 0.380 3.620 8 H 0.294 0.706 9 N -0.521 5.521 10 C 0.174 3.826 11 C -0.110 4.110 12 C -0.062 4.062 13 N -0.256 5.256 14 C 0.201 3.799 15 C -0.520 4.520 16 C -0.144 4.144 17 C -0.151 4.151 18 C -0.599 4.599 19 C -0.021 4.021 20 C -0.034 4.034 21 O -0.316 6.316 22 C 0.541 3.459 23 F -0.196 7.196 24 F -0.143 7.143 25 O -0.348 6.348 26 N -0.139 5.139 27 N -0.326 5.326 28 H 0.378 0.622 29 H 0.431 0.569 30 H 0.188 0.812 31 H 0.158 0.842 32 H 0.217 0.783 33 H 0.029 0.971 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.892 55.918 -4.916 58.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.326 4.326 3 Si 0.859 3.141 4 H -0.137 1.137 5 H -0.198 1.198 6 H -0.146 1.146 7 C 0.196 3.804 8 H 0.309 0.691 9 N -0.108 5.108 10 C 0.052 3.948 11 C -0.252 4.252 12 C -0.218 4.218 13 N -0.051 5.051 14 C 0.096 3.904 15 C -0.528 4.528 16 C -0.163 4.163 17 C -0.171 4.171 18 C -0.619 4.619 19 C -0.063 4.063 20 C -0.075 4.075 21 O -0.237 6.237 22 C 0.431 3.569 23 F -0.179 7.179 24 F -0.124 7.124 25 O -0.270 6.270 26 N -0.118 5.118 27 N -0.189 5.189 28 H 0.197 0.803 29 H 0.271 0.729 30 H 0.205 0.795 31 H 0.175 0.825 32 H 0.234 0.766 33 H 0.047 0.953 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 16.638 54.935 -3.560 57.509 hybrid contribution -1.083 -0.666 -0.103 1.276 sum 15.555 54.269 -3.663 56.573 Atomic orbital electron populations 1.69751 1.10369 1.42140 0.96746 1.29131 0.97594 1.07928 0.97995 0.84046 0.78283 0.67586 0.84222 1.13704 1.19794 1.14563 1.27089 1.04134 0.81180 0.68004 0.69081 1.47727 1.15585 1.08616 1.38879 1.21149 0.89687 0.72919 1.11003 1.22384 1.08080 1.05709 0.89054 1.24675 0.99752 0.94010 1.03373 1.52841 1.26788 1.19964 1.05479 1.20102 0.92352 0.86247 0.91729 1.15272 1.22354 0.98382 1.16790 1.18987 1.02270 0.94303 1.00729 1.19120 1.01224 0.96817 0.99894 1.16511 1.22316 1.00498 1.22587 1.19293 0.97862 0.97527 0.91614 1.18618 0.96237 0.91269 1.01409 1.87179 1.53262 1.55313 1.27908 1.23613 0.74268 0.79345 0.79625 1.93095 1.74824 1.86589 1.63347 1.93014 1.33865 1.95708 1.89848 1.87101 1.61131 1.27011 1.51754 1.78504 1.20168 1.15056 0.98070 1.74884 1.09248 1.06257 1.28546 0.80255 0.72885 0.79481 0.82478 0.76637 0.95286 0.89057 0.91178 0.93022 0.97866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.57 5.90 13.06 21.65 0.28 6.19 16 2 C -0.09 1.71 5.50 84.86 0.47 2.18 16 3 Si 1.05 -19.92 29.55 68.60 2.03 -17.89 16 4 H -0.22 4.13 7.11 99.48 0.71 4.83 16 5 H -0.27 3.32 7.11 99.48 0.71 4.03 16 6 H -0.22 4.01 7.11 99.48 0.71 4.71 16 7 C 0.38 -8.94 9.99 84.04 0.84 -8.10 16 8 H 0.29 -11.27 7.83 -2.91 -0.02 -11.29 16 9 N -0.52 5.86 5.59 -347.17 -1.94 3.92 16 10 C 0.17 -0.72 6.82 85.63 0.58 -0.14 16 11 C -0.11 -2.39 6.61 41.59 0.28 -2.11 16 12 C -0.06 -1.83 11.50 83.49 0.96 -0.87 16 13 N -0.26 -12.51 3.43 -351.47 -1.21 -13.71 16 14 C 0.20 11.56 6.58 85.63 0.56 12.12 16 15 C -0.52 -38.53 5.26 -19.79 -0.10 -38.64 16 16 C -0.14 -10.82 9.67 22.28 0.22 -10.60 16 17 C -0.15 -12.35 10.04 22.27 0.22 -12.13 16 18 C -0.60 -53.49 10.06 22.34 0.22 -53.26 16 19 C -0.02 -1.86 7.15 22.59 0.16 -1.70 16 20 C -0.03 -2.76 6.82 22.59 0.15 -2.61 16 21 O -0.32 -23.91 11.34 -76.05 -0.86 -24.77 16 22 C 0.54 38.90 3.69 113.37 0.42 39.32 16 23 F -0.20 -13.61 17.57 44.97 0.79 -12.82 16 24 F -0.14 -8.87 17.57 44.97 0.79 -8.08 16 25 O -0.35 -28.22 11.34 -75.99 -0.86 -29.08 16 26 N -0.14 -7.61 12.91 37.02 0.48 -7.13 16 27 N -0.33 -12.94 12.41 -48.60 -0.60 -13.54 16 28 H 0.38 -4.46 8.31 -92.71 -0.77 -5.23 16 29 H 0.43 -1.87 7.66 -92.71 -0.71 -2.58 16 30 H 0.19 -2.71 8.14 -2.38 -0.02 -2.73 16 31 H 0.16 -1.25 8.14 -2.38 -0.02 -1.27 16 32 H 0.22 3.78 8.06 -2.91 -0.02 3.76 16 33 H 0.03 1.73 8.12 -2.39 -0.02 1.71 16 34 H 0.09 4.44 7.98 -2.39 -0.02 4.42 16 35 H 0.07 4.59 8.06 -2.91 -0.02 4.57 16 36 H 0.05 3.88 8.06 -2.91 -0.02 3.86 16 37 H 0.00 0.25 8.06 -2.91 -0.02 0.23 16 Total: -1.00 -188.78 344.21 4.32 -184.45 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.45 Total: 9.01 kcal Atomic # 6 Polarization: -81.52 SS G_CDS: 4.98 Total: -76.54 kcal Atomic # 7 Polarization: -21.30 SS G_CDS: -2.99 Total: -24.29 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -1.72 Total: -53.85 kcal Atomic # 9 Polarization: -22.48 SS G_CDS: 1.58 Total: -20.90 kcal Atomic # 14 Polarization: -19.92 SS G_CDS: 2.03 Total: -17.89 kcal Total: -188.78 4.32 -184.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603248224.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.532 kcal (2) G-P(sol) polarization free energy of solvation -188.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -184.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds