Wall clock time and date at job start Tue Mar 31 2020 20:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47259 * 2 1 4 4 C 1.36083 * 126.34888 * 269.99572 * 3 2 1 5 5 C 1.50700 * 124.95332 * 0.02562 * 4 3 2 6 6 O 1.45204 * 109.46996 * 269.97050 * 5 4 3 7 7 C 1.34226 * 116.99836 * 180.02562 * 6 5 4 8 8 O 1.20826 * 120.00363 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99697 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.47280 * 179.97438 * 9 7 6 11 11 C 1.76198 * 100.00568 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99668 * 0.02562 * 11 10 9 13 13 C 1.38795 * 120.00339 * 179.97438 * 11 10 9 14 14 N 1.31625 * 119.99998 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99963 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47265 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46820 * 120.00157 * 15 13 11 18 18 H 1.48503 * 109.47474 * 240.00423 * 15 13 11 19 19 N 1.30077 * 110.08965 * 179.97438 * 4 3 2 20 20 C 1.35816 * 109.63716 * 0.02562 * 19 4 3 21 21 C 1.38079 * 126.34634 * 90.00322 * 3 2 1 22 22 C 1.38833 * 134.04242 * 359.97438 * 21 3 2 23 23 C 1.37844 * 119.87525 * 180.02562 * 22 21 3 24 24 C 1.38745 * 120.47685 * 0.02562 * 23 22 21 25 25 C 1.37834 * 120.49809 * 359.97438 * 24 23 22 26 26 F 1.35099 * 120.13794 * 179.97438 * 25 24 23 27 27 H 1.09003 * 109.46791 * 299.99917 * 1 2 3 28 28 H 1.08995 * 109.46640 * 59.99483 * 1 2 3 29 29 H 1.08997 * 109.46986 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46791 * 240.00083 * 2 1 3 31 31 H 1.09006 * 109.47021 * 120.00248 * 2 1 3 32 32 H 1.09003 * 109.47532 * 29.96877 * 5 4 3 33 33 H 1.08997 * 109.47092 * 149.96829 * 5 4 3 34 34 H 1.09001 * 109.47335 * 299.99722 * 9 7 6 35 35 H 1.09000 * 109.47698 * 59.99830 * 9 7 6 36 36 H 0.97005 * 120.00309 * 179.97438 * 14 13 11 37 37 H 1.08004 * 120.05843 * 0.02661 * 22 21 3 38 38 H 1.08004 * 119.76292 * 180.02562 * 23 22 21 39 39 H 1.08002 * 119.75388 * 179.72310 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2873 2.1416 -1.0960 5 6 2.1258 1.6862 -2.5235 6 8 3.3648 1.0838 -2.9824 7 6 3.3882 0.6236 -4.2431 8 8 2.4059 0.7205 -4.9400 9 6 4.6396 -0.0139 -4.7894 10 16 4.3567 -0.5286 -6.5014 11 6 5.9334 -1.2191 -6.8780 12 1 6.7126 -1.2256 -6.1301 13 6 6.1738 -1.7556 -8.1353 14 7 5.2240 -1.7480 -9.0466 15 14 7.8456 -2.4869 -8.5347 16 1 8.7319 -2.3729 -7.3487 17 1 7.6860 -3.9182 -8.8970 18 1 8.4479 -1.7516 -9.6757 19 7 2.7031 3.3191 -0.7318 20 6 2.7298 3.3945 0.6239 21 6 2.2912 2.1527 1.1122 22 6 2.2136 1.9343 2.4810 23 6 2.5679 2.9374 3.3575 24 6 3.0020 4.1664 2.8822 25 6 3.0857 4.4023 1.5267 26 9 3.5088 5.6020 1.0719 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.3216 0.9528 -2.5822 33 1 1.8833 2.5425 -3.1528 34 1 5.4580 0.7054 -4.7564 35 1 4.8968 -0.8847 -4.1864 36 1 5.3921 -2.1226 -9.9255 37 1 1.8762 0.9802 2.8583 38 1 2.5072 2.7653 4.4221 39 1 3.2724 4.9457 3.5794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728620143.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:15 Heat of formation + Delta-G solvation = -56.890387 kcal Electronic energy + Delta-G solvation = -25459.678107 eV Core-core repulsion = 21409.186751 eV Total energy + Delta-G solvation = -4050.491356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.03431 -42.63485 -40.18357 -37.74198 -36.29976 -35.46620 -32.52488 -31.57468 -31.06645 -29.70534 -29.62390 -27.37729 -25.58374 -24.41363 -22.81763 -22.49477 -21.23782 -20.43437 -18.23648 -18.03248 -17.91978 -17.34486 -16.64853 -16.29174 -16.28728 -15.89604 -15.84545 -15.28936 -14.97773 -14.88071 -14.62990 -14.19509 -13.91853 -13.69138 -13.41402 -13.27353 -12.82013 -12.73731 -12.48295 -12.39403 -12.13979 -12.08079 -11.87158 -11.75424 -11.12333 -11.12298 -10.85345 -10.78570 -10.66145 -10.43577 -10.21455 -9.93937 -9.16049 -8.85927 -8.41775 -8.34667 -6.65499 -6.31394 -4.04508 0.35261 0.96470 1.89960 2.13339 2.49537 2.75922 3.17442 3.20217 3.26255 3.31039 3.41272 3.65815 3.84934 4.04838 4.11295 4.16317 4.46929 4.47406 4.64092 4.66693 4.73274 4.85195 4.93362 5.02309 5.04883 5.12153 5.20779 5.23179 5.32002 5.46222 5.57103 5.63105 5.69865 5.85042 5.88627 5.99656 6.01292 6.39542 6.42514 6.64091 7.43419 7.52208 7.97528 8.26799 9.14506 10.76123 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.002188 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.829711 B =12796.771030 C =13306.959312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 N -0.475 5.475 4 C 0.288 3.712 5 C 0.145 3.855 6 O -0.355 6.355 7 C 0.484 3.516 8 O -0.482 6.482 9 C -0.128 4.128 10 S -0.056 6.056 11 C -0.536 4.536 12 H 0.077 0.923 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.922 3.078 16 H -0.270 1.270 17 H -0.279 1.279 18 H -0.279 1.279 19 N -0.457 5.457 20 C 0.009 3.991 21 C 0.083 3.917 22 C -0.121 4.121 23 C -0.073 4.073 24 C -0.168 4.168 25 C 0.160 3.840 26 F -0.127 7.127 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.269 0.731 37 H 0.130 0.870 38 H 0.141 0.859 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.869 5.237 26.485 28.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.165 5.165 4 C 0.022 3.978 5 C 0.069 3.931 6 O -0.272 6.272 7 C 0.325 3.675 8 O -0.367 6.367 9 C -0.276 4.276 10 S 0.170 5.830 11 C -0.684 4.684 12 H 0.095 0.905 13 C -0.135 4.135 14 N -0.502 5.502 15 Si 0.748 3.252 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.205 1.205 19 N -0.177 5.177 20 C -0.111 4.111 21 C -0.028 4.028 22 C -0.142 4.142 23 C -0.093 4.093 24 C -0.189 4.189 25 C 0.139 3.861 26 F -0.105 7.105 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.148 0.852 38 H 0.159 0.841 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.974 5.881 24.857 27.421 hybrid contribution 1.891 -0.983 0.890 2.309 sum -8.083 4.898 25.746 27.426 Atomic orbital electron populations 1.22213 0.93684 1.03746 1.03383 1.21967 0.95855 0.78799 1.05524 1.45445 1.53433 1.13126 1.04522 1.22940 0.98364 0.86726 0.89768 1.21036 0.86168 0.99855 0.86088 1.86586 1.37742 1.70731 1.32189 1.23399 0.90473 0.75218 0.78438 1.90692 1.35774 1.52302 1.57935 1.23326 0.95167 1.03318 1.05753 1.85418 1.20370 1.76673 1.00514 1.22875 0.98324 1.45499 1.01703 0.90492 1.25006 0.98187 0.95294 0.95031 1.70013 1.32500 1.42833 1.04836 0.86062 0.81914 0.78661 0.78558 1.19491 1.20502 1.20454 1.70453 1.19020 1.18119 1.10104 1.18871 1.07577 0.93975 0.90699 1.18595 1.03011 0.91708 0.89458 1.19980 1.05079 1.00793 0.88358 1.20698 0.97404 0.91475 0.99710 1.20875 1.05847 0.99664 0.92549 1.16818 0.98827 0.79765 0.90690 1.91521 1.86962 1.42281 1.89782 0.91700 0.91557 0.89892 0.88069 0.88506 0.88793 0.87121 0.87626 0.87819 0.92076 0.85250 0.84105 0.83921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.24 37.16 0.38 -0.57 16 2 C 0.10 0.69 6.45 -4.04 -0.03 0.66 16 3 N -0.48 -5.00 2.81 -111.16 -0.31 -5.31 16 4 C 0.29 3.77 7.50 -154.81 -1.16 2.61 16 5 C 0.14 1.86 5.53 36.01 0.20 2.05 16 6 O -0.36 -5.51 10.20 -39.25 -0.40 -5.91 16 7 C 0.48 8.80 7.97 36.00 0.29 9.09 16 8 O -0.48 -9.89 15.61 -18.75 -0.29 -10.19 16 9 C -0.13 -2.52 6.27 36.00 0.23 -2.29 16 10 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 11 C -0.54 -14.79 9.50 30.94 0.29 -14.49 16 12 H 0.08 2.02 7.80 -52.48 -0.41 1.61 16 13 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -25.39 13.22 55.49 0.73 -24.65 16 15 Si 0.92 20.94 29.55 -169.99 -5.02 15.91 16 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 N -0.46 -7.03 11.27 -8.19 -0.09 -7.12 16 20 C 0.01 0.12 7.21 -84.64 -0.61 -0.49 16 21 C 0.08 0.90 6.87 -83.99 -0.58 0.33 16 22 C -0.12 -0.92 10.04 -39.51 -0.40 -1.32 16 23 C -0.07 -0.48 10.02 -39.54 -0.40 -0.87 16 24 C -0.17 -1.39 9.99 -39.54 -0.40 -1.78 16 25 C 0.16 1.92 7.34 -39.10 -0.29 1.63 16 26 F -0.13 -1.70 17.27 2.25 0.04 -1.66 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 0.71 7.62 -51.93 -0.40 0.31 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.99 7.64 -51.93 -0.40 0.59 16 33 H 0.11 1.43 8.13 -51.93 -0.42 1.01 16 34 H 0.11 1.98 8.14 -51.92 -0.42 1.55 16 35 H 0.10 1.86 8.14 -51.92 -0.42 1.44 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 38 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 39 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -34.60 364.80 -9.19 -43.79 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -4.56 Total: -3.21 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -2.56 Total: -3.49 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.33 Total: -37.08 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.69 Total: -16.10 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.60 -9.19 -43.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728620143.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.102 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds