Wall clock time and date at job start Tue Mar 31 2020 20:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47259 * 2 1 4 4 C 1.36083 * 126.34888 * 269.99572 * 3 2 1 5 5 C 1.50700 * 124.95332 * 0.02562 * 4 3 2 6 6 O 1.45204 * 109.46996 * 269.97050 * 5 4 3 7 7 C 1.34226 * 116.99836 * 180.02562 * 6 5 4 8 8 O 1.20826 * 120.00363 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99697 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.47280 * 179.97438 * 9 7 6 11 11 C 1.76198 * 100.00568 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99668 * 0.02562 * 11 10 9 13 13 C 1.38795 * 120.00339 * 179.97438 * 11 10 9 14 14 N 1.31625 * 119.99998 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99963 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47265 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46820 * 120.00157 * 15 13 11 18 18 H 1.48503 * 109.47474 * 240.00423 * 15 13 11 19 19 N 1.30077 * 110.08965 * 179.97438 * 4 3 2 20 20 C 1.35816 * 109.63716 * 0.02562 * 19 4 3 21 21 C 1.38079 * 126.34634 * 90.00322 * 3 2 1 22 22 C 1.38833 * 134.04242 * 359.97438 * 21 3 2 23 23 C 1.37844 * 119.87525 * 180.02562 * 22 21 3 24 24 C 1.38745 * 120.47685 * 0.02562 * 23 22 21 25 25 C 1.37834 * 120.49809 * 359.97438 * 24 23 22 26 26 F 1.35099 * 120.13794 * 179.97438 * 25 24 23 27 27 H 1.09003 * 109.46791 * 299.99917 * 1 2 3 28 28 H 1.08995 * 109.46640 * 59.99483 * 1 2 3 29 29 H 1.08997 * 109.46986 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46791 * 240.00083 * 2 1 3 31 31 H 1.09006 * 109.47021 * 120.00248 * 2 1 3 32 32 H 1.09003 * 109.47532 * 29.96877 * 5 4 3 33 33 H 1.08997 * 109.47092 * 149.96829 * 5 4 3 34 34 H 1.09001 * 109.47335 * 299.99722 * 9 7 6 35 35 H 1.09000 * 109.47698 * 59.99830 * 9 7 6 36 36 H 0.97005 * 120.00309 * 179.97438 * 14 13 11 37 37 H 1.08004 * 120.05843 * 0.02661 * 22 21 3 38 38 H 1.08004 * 119.76292 * 180.02562 * 23 22 21 39 39 H 1.08002 * 119.75388 * 179.72310 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2873 2.1416 -1.0960 5 6 2.1258 1.6862 -2.5235 6 8 3.3648 1.0838 -2.9824 7 6 3.3882 0.6236 -4.2431 8 8 2.4059 0.7205 -4.9400 9 6 4.6396 -0.0139 -4.7894 10 16 4.3567 -0.5286 -6.5014 11 6 5.9334 -1.2191 -6.8780 12 1 6.7126 -1.2256 -6.1301 13 6 6.1738 -1.7556 -8.1353 14 7 5.2240 -1.7480 -9.0466 15 14 7.8456 -2.4869 -8.5347 16 1 8.7319 -2.3729 -7.3487 17 1 7.6860 -3.9182 -8.8970 18 1 8.4479 -1.7516 -9.6757 19 7 2.7031 3.3191 -0.7318 20 6 2.7298 3.3945 0.6239 21 6 2.2912 2.1527 1.1122 22 6 2.2136 1.9343 2.4810 23 6 2.5679 2.9374 3.3575 24 6 3.0020 4.1664 2.8822 25 6 3.0857 4.4023 1.5267 26 9 3.5088 5.6020 1.0719 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.3216 0.9528 -2.5822 33 1 1.8833 2.5425 -3.1528 34 1 5.4580 0.7054 -4.7564 35 1 4.8968 -0.8847 -4.1864 36 1 5.3921 -2.1226 -9.9255 37 1 1.8762 0.9802 2.8583 38 1 2.5072 2.7653 4.4221 39 1 3.2724 4.9457 3.5794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728620143.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:14 Heat of formation + Delta-G solvation = -76.595818 kcal Electronic energy + Delta-G solvation = -25460.532598 eV Core-core repulsion = 21409.186751 eV Total energy + Delta-G solvation = -4051.345847 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.91731 -43.44996 -41.59114 -38.49655 -37.63347 -36.17127 -34.61952 -32.50721 -31.88807 -30.99943 -30.32374 -28.37659 -27.67539 -24.98662 -23.54247 -23.38074 -22.57257 -21.25127 -19.95236 -19.01190 -18.88827 -18.60916 -17.78943 -17.51159 -17.15547 -16.93757 -16.88853 -16.59939 -16.22379 -15.95380 -15.76649 -15.19027 -15.13336 -14.79868 -14.58078 -14.24408 -13.91635 -13.69962 -13.69000 -13.29355 -13.18133 -12.94520 -12.92353 -12.70695 -12.67642 -12.55750 -12.29192 -12.03877 -11.78579 -11.74260 -11.43665 -11.31493 -11.18250 -10.39702 -9.62265 -9.10072 -8.74202 -8.38568 -6.17878 -0.43350 0.26848 0.76906 1.01791 1.30873 1.37965 1.41572 1.46888 1.57715 1.99767 2.22525 2.57894 2.69484 2.96809 3.07884 3.24214 3.30851 3.58262 3.68845 3.84020 3.86094 3.98064 4.04252 4.09669 4.14194 4.24120 4.29701 4.35107 4.41503 4.62943 4.72141 4.78368 5.03561 5.06735 5.15063 5.15692 5.20922 5.33188 5.41043 5.75210 5.88483 6.17618 6.53623 6.56676 7.03731 8.70751 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.002188 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.829711 B =12796.771030 C =13306.959312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.092 3.908 3 N -0.468 5.468 4 C 0.271 3.729 5 C 0.146 3.854 6 O -0.350 6.350 7 C 0.496 3.504 8 O -0.509 6.509 9 C -0.109 4.109 10 S -0.130 6.130 11 C -0.548 4.548 12 H 0.085 0.915 13 C 0.017 3.983 14 N -0.909 5.909 15 Si 0.999 3.001 16 H -0.258 1.258 17 H -0.272 1.272 18 H -0.275 1.275 19 N -0.504 5.504 20 C -0.032 4.032 21 C 0.076 3.924 22 C -0.113 4.113 23 C -0.059 4.059 24 C -0.151 4.151 25 C 0.116 3.884 26 F -0.148 7.148 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.273 0.727 37 H 0.166 0.834 38 H 0.188 0.812 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.338 3.729 30.055 31.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.028 4.028 3 N -0.158 5.158 4 C 0.006 3.994 5 C 0.071 3.929 6 O -0.266 6.266 7 C 0.338 3.662 8 O -0.396 6.396 9 C -0.257 4.257 10 S 0.097 5.903 11 C -0.696 4.696 12 H 0.103 0.897 13 C -0.189 4.189 14 N -0.545 5.545 15 Si 0.821 3.179 16 H -0.182 1.182 17 H -0.197 1.197 18 H -0.200 1.200 19 N -0.225 5.225 20 C -0.151 4.151 21 C -0.035 4.035 22 C -0.134 4.134 23 C -0.079 4.079 24 C -0.172 4.172 25 C 0.095 3.905 26 F -0.126 7.126 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.122 0.878 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.082 0.918 37 H 0.183 0.817 38 H 0.205 0.795 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.455 4.364 28.460 30.306 hybrid contribution 1.650 -0.444 0.024 1.709 sum -7.806 3.920 28.484 29.793 Atomic orbital electron populations 1.22191 0.92605 1.04844 1.02838 1.22303 0.96721 0.77042 1.06711 1.45604 1.52582 1.13935 1.03657 1.22737 0.99525 0.86982 0.90185 1.21192 0.85375 1.00078 0.86257 1.86532 1.39367 1.70288 1.30409 1.22960 0.89465 0.74778 0.78999 1.90687 1.36576 1.53485 1.58882 1.23104 0.96298 1.04601 1.01704 1.85494 1.21263 1.77308 1.06186 1.23215 0.98604 1.45451 1.02281 0.89689 1.26090 1.02412 0.95566 0.94787 1.70156 1.34937 1.43980 1.05407 0.84902 0.76655 0.77798 0.78590 1.18178 1.19732 1.20019 1.70319 1.20539 1.19722 1.11968 1.19303 1.09476 0.95981 0.90347 1.18997 1.03023 0.90742 0.90745 1.20510 1.03592 1.02576 0.86703 1.21289 0.94870 0.89921 1.01781 1.21330 1.03567 1.01132 0.91128 1.17355 1.01538 0.79389 0.92177 1.91454 1.87593 1.43369 1.90232 0.91371 0.92993 0.87891 0.88398 0.85833 0.86488 0.87825 0.86400 0.85589 0.91816 0.81656 0.79512 0.81364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.24 71.98 0.74 -0.76 16 2 C 0.09 1.06 6.45 86.38 0.56 1.62 16 3 N -0.47 -9.37 2.81 -505.60 -1.42 -10.79 16 4 C 0.27 7.27 7.50 137.92 1.03 8.31 16 5 C 0.15 3.84 5.53 71.24 0.39 4.23 16 6 O -0.35 -10.83 10.20 -51.38 -0.52 -11.36 16 7 C 0.50 18.11 7.97 71.23 0.57 18.68 16 8 O -0.51 -21.31 15.61 21.96 0.34 -20.96 16 9 C -0.11 -4.26 6.27 71.23 0.45 -3.81 16 10 S -0.13 -6.86 20.57 -56.49 -1.16 -8.03 16 11 C -0.55 -30.34 9.50 67.95 0.65 -29.69 16 12 H 0.09 4.40 7.80 -2.91 -0.02 4.38 16 13 C 0.02 0.92 5.49 84.86 0.47 1.39 16 14 N -0.91 -54.12 13.22 21.65 0.29 -53.83 16 15 Si 1.00 42.67 29.55 68.60 2.03 44.70 16 16 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 19 N -0.50 -16.33 11.27 -179.84 -2.03 -18.35 16 20 C -0.03 -0.88 7.21 39.47 0.28 -0.59 16 21 C 0.08 1.54 6.87 38.84 0.27 1.81 16 22 C -0.11 -1.28 10.04 22.32 0.22 -1.06 16 23 C -0.06 -0.51 10.02 22.30 0.22 -0.29 16 24 C -0.15 -2.12 9.99 22.30 0.22 -1.90 16 25 C 0.12 2.82 7.34 22.58 0.17 2.99 16 26 F -0.15 -4.20 17.27 44.97 0.78 -3.43 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 1.21 7.62 -2.39 -0.02 1.19 16 31 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.12 2.47 7.64 -2.39 -0.02 2.45 16 33 H 0.10 2.84 8.13 -2.39 -0.02 2.82 16 34 H 0.12 4.35 8.14 -2.39 -0.02 4.33 16 35 H 0.13 4.38 8.14 -2.40 -0.02 4.36 16 36 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 37 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 38 H 0.19 -0.04 8.06 -2.91 -0.02 -0.07 16 39 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -79.51 364.80 5.62 -73.89 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 1.08 Total: 7.24 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 6.24 Total: 0.93 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -3.16 Total: -82.98 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.18 Total: -32.32 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.78 Total: -3.43 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: -6.86 SS G_CDS: -1.16 Total: -8.03 kcal Total: -79.51 5.62 -73.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728620143.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.706 kcal (2) G-P(sol) polarization free energy of solvation -79.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds