Wall clock time and date at job start Tue Mar 31 2020 21:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31516 * 119.99546 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00061 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47023 * 90.00536 * 8 6 4 10 10 H 1.48503 * 109.47041 * 210.00292 * 8 6 4 11 11 H 1.48500 * 109.47388 * 329.99951 * 8 6 4 12 12 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 13 13 C 1.46907 * 110.99846 * 306.04564 * 12 2 1 14 14 C 1.46894 * 111.00206 * 70.00284 * 12 2 1 15 15 N 1.46497 * 109.47229 * 170.00001 * 14 12 2 16 16 C 1.36539 * 127.14315 * 269.68001 * 15 14 12 17 17 S 1.76201 * 126.48217 * 0.02562 * 16 15 14 18 18 N 1.31281 * 107.03161 * 179.89607 * 16 15 14 19 19 N 1.28519 * 109.86035 * 0.38293 * 18 16 15 20 20 C 1.30297 * 110.07605 * 359.75784 * 19 18 16 21 21 C 1.50701 * 126.34256 * 179.97438 * 20 19 18 22 22 C 1.50701 * 109.46822 * 270.01955 * 21 20 19 23 23 C 1.33401 * 125.19996 * 89.71871 * 22 21 20 24 24 C 1.38426 * 114.91796 * 179.85957 * 23 22 21 25 25 C 1.33387 * 114.91904 * 0.42901 * 24 23 22 26 26 S 1.75876 * 125.20837 * 270.02312 * 22 21 20 27 27 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 30 30 H 0.97005 * 119.99945 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46867 * 60.00675 * 13 12 2 32 32 H 1.08998 * 109.46750 * 180.02562 * 13 12 2 33 33 H 1.08994 * 109.46944 * 299.99912 * 13 12 2 34 34 H 1.08998 * 109.46955 * 290.00099 * 14 12 2 35 35 H 1.08998 * 109.47049 * 49.99909 * 14 12 2 36 36 H 1.41002 * 100.00313 * 89.99741 * 17 16 15 37 37 H 1.08998 * 109.47253 * 30.02070 * 21 20 19 38 38 H 1.08995 * 109.47295 * 150.02213 * 21 20 19 39 39 H 1.08000 * 122.53590 * 0.02562 * 23 22 21 40 40 H 1.07995 * 122.53777 * 180.19927 * 24 23 22 41 41 H 1.08000 * 125.19929 * 179.79167 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6258 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1774 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7530 0.0972 -2.4090 15 7 2.4573 -0.4993 -3.5467 16 6 3.7204 -0.2109 -3.9776 17 16 4.8281 0.9603 -3.2662 18 7 3.9544 -0.9732 -5.0205 19 7 2.9258 -1.7031 -5.2673 20 6 1.9839 -1.4562 -4.4015 21 6 0.6245 -2.1046 -4.3514 22 6 -0.3440 -1.3059 -5.1852 23 6 -0.5794 -1.4967 -6.4843 24 6 -1.5155 -0.6412 -7.0392 25 6 -2.0338 0.2500 -6.1928 26 16 -1.3312 0.0251 -4.5962 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9033 -0.5279 4.4376 31 1 0.3490 -1.9549 -1.3694 32 1 1.8140 -2.5261 -2.2040 33 1 1.7059 -2.6221 -0.4301 34 1 0.6815 0.1053 -2.6087 35 1 2.1026 1.1188 -2.2603 36 1 5.4916 0.1354 -2.3348 37 1 0.6912 -3.1193 -4.7440 38 1 0.2750 -2.1367 -3.3195 39 1 -0.0794 -2.2624 -7.0589 40 1 -1.8018 -0.6892 -8.0794 41 1 -2.7721 0.9955 -6.4487 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728902512.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:46 Heat of formation + Delta-G solvation = 144.016076 kcal Electronic energy + Delta-G solvation = -25301.472082 eV Core-core repulsion = 21858.198612 eV Total energy + Delta-G solvation = -3443.273470 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.93908 -38.21209 -38.02111 -34.54414 -33.49827 -32.47382 -29.94822 -29.76610 -27.64876 -26.58691 -25.57674 -24.29461 -23.53966 -22.48191 -21.00243 -19.74940 -19.46446 -18.13661 -17.51202 -17.05179 -16.52659 -16.37578 -15.67395 -15.07996 -14.97838 -14.90951 -14.41480 -14.18524 -13.61080 -13.49660 -13.24826 -13.02914 -12.80571 -12.69513 -12.45531 -12.00421 -11.97683 -11.83759 -11.64424 -11.44614 -11.36425 -11.11836 -10.93585 -10.73685 -10.48644 -10.33003 -10.26438 -9.70533 -9.36318 -9.19668 -8.90320 -8.78063 -8.69246 -8.27929 -7.89814 -6.25294 -4.26312 0.71210 1.09564 1.36414 1.52497 1.75926 2.37388 2.47668 2.69168 2.95867 3.10683 3.19710 3.25156 4.15338 4.21212 4.36949 4.47284 4.56795 4.76385 4.86122 5.05064 5.15754 5.22892 5.33445 5.35586 5.41448 5.57657 5.68045 5.76953 5.89749 5.90849 5.93306 6.01564 6.05538 6.18793 6.25336 6.31738 6.55632 6.61664 6.82998 7.25416 7.48618 7.60158 8.38195 8.60576 8.80266 9.34073 10.87284 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.011045 B = 0.004510 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.364725 B = 6207.472148 C = 7741.688749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.189 3.811 3 H 0.047 0.953 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.075 3.925 7 N -0.893 5.893 8 Si 0.883 3.117 9 H -0.279 1.279 10 H -0.294 1.294 11 H -0.267 1.267 12 N -0.531 5.531 13 C 0.020 3.980 14 C 0.260 3.740 15 N -0.439 5.439 16 C 0.168 3.832 17 S -0.022 6.022 18 N -0.249 5.249 19 N -0.287 5.287 20 C 0.200 3.800 21 C 0.028 3.972 22 C -0.180 4.180 23 C -0.117 4.117 24 C -0.135 4.135 25 C -0.210 4.210 26 S 0.099 5.901 27 H 0.028 0.972 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.266 0.734 31 H 0.029 0.971 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.169 2.098 -16.938 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.082 3.918 3 H 0.065 0.935 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.128 4.128 7 N -0.530 5.530 8 Si 0.713 3.287 9 H -0.206 1.206 10 H -0.221 1.221 11 H -0.192 1.192 12 N -0.255 5.255 13 C -0.128 4.128 14 C 0.048 3.952 15 N -0.132 5.132 16 C -0.208 4.208 17 S 0.128 5.872 18 N -0.094 5.094 19 N -0.130 5.130 20 C -0.069 4.069 21 C -0.014 4.014 22 C -0.299 4.299 23 C -0.148 4.148 24 C -0.165 4.165 25 C -0.345 4.345 26 S 0.363 5.637 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.134 0.866 36 H 0.084 0.916 37 H 0.139 0.861 38 H 0.121 0.879 39 H 0.163 0.837 40 H 0.159 0.841 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.656 2.945 -16.180 17.392 hybrid contribution -2.265 -0.420 0.171 2.310 sum -7.921 2.526 -16.009 18.040 Atomic orbital electron populations 1.22897 1.01077 1.01554 0.99485 1.19801 0.89077 0.95434 0.87498 0.93530 1.20770 1.32336 1.14115 0.87410 0.89991 1.24883 0.95712 0.96538 0.95693 1.69860 1.45030 1.40118 0.98014 0.86933 0.80571 0.83773 0.77375 1.20561 1.22109 1.19173 1.62135 1.59563 1.02907 1.00915 1.22581 0.96475 0.91166 1.02587 1.22566 0.94291 0.96868 0.81510 1.47193 1.12814 1.29674 1.23484 1.25806 0.89043 1.06002 0.99978 1.86749 1.42224 1.10250 1.48004 1.74741 1.18554 1.04334 1.11768 1.74045 0.97402 1.20022 1.21509 1.24672 0.98503 0.92837 0.90925 1.18740 0.83604 0.97882 1.01127 1.24165 1.04431 1.02933 0.98327 1.20206 0.99294 1.01667 0.93631 1.20184 0.98692 0.96528 1.01144 1.25668 1.07031 1.05594 0.96255 1.84472 1.37173 1.30465 1.11614 0.95260 0.91994 0.92935 0.92341 0.95268 0.93422 0.89064 0.91644 0.86561 0.91620 0.86087 0.87889 0.83726 0.84112 0.81834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.58 7.92 37.16 0.29 -3.29 16 2 C 0.19 3.89 1.90 -68.86 -0.13 3.76 16 3 H 0.05 0.99 6.99 -51.93 -0.36 0.63 16 4 C -0.51 -12.89 8.55 -34.44 -0.29 -13.19 16 5 H 0.08 2.32 7.35 -52.49 -0.39 1.94 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 7 N -0.89 -25.62 13.96 55.43 0.77 -24.85 16 8 Si 0.88 20.09 24.37 -169.99 -4.14 15.94 16 9 H -0.28 -6.19 6.87 56.52 0.39 -5.80 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -5.70 6.53 56.52 0.37 -5.33 16 12 N -0.53 -9.54 4.84 -240.20 -1.16 -10.71 16 13 C 0.02 0.33 7.31 60.07 0.44 0.77 16 14 C 0.26 3.97 5.09 -63.32 -0.32 3.65 16 15 N -0.44 -6.81 2.75 -116.81 -0.32 -7.13 16 16 C 0.17 2.74 8.37 -88.34 -0.74 2.00 16 17 S -0.02 -0.31 25.77 -107.50 -2.77 -3.08 16 18 N -0.25 -4.43 12.23 30.68 0.38 -4.06 16 19 N -0.29 -4.86 12.17 33.00 0.40 -4.46 16 20 C 0.20 2.97 6.07 -153.99 -0.93 2.04 16 21 C 0.03 0.32 5.35 -29.03 -0.16 0.17 16 22 C -0.18 -2.03 5.75 -36.00 -0.21 -2.24 16 23 C -0.12 -1.21 10.05 -41.20 -0.41 -1.63 16 24 C -0.13 -1.25 10.18 -41.21 -0.42 -1.67 16 25 C -0.21 -1.95 11.23 29.04 0.33 -1.62 16 26 S 0.10 1.08 22.57 -107.50 -2.43 -1.35 16 27 H 0.03 0.46 6.91 -51.93 -0.36 0.10 16 28 H 0.06 1.13 6.33 -51.93 -0.33 0.80 16 29 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 30 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.03 0.44 5.42 -51.93 -0.28 0.16 16 32 H 0.05 0.73 5.39 -51.93 -0.28 0.45 16 33 H 0.09 1.73 6.86 -51.93 -0.36 1.37 16 34 H 0.07 0.92 6.02 -51.93 -0.31 0.61 16 35 H 0.12 1.73 7.64 -51.93 -0.40 1.33 16 36 H 0.12 1.65 9.55 96.90 0.93 2.58 16 37 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.10 1.18 4.94 -51.93 -0.26 0.93 16 39 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 349.65 15.07 5.27 5.27 Total: -1.00 -29.63 349.65 -10.09 -39.72 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -3.44 Total: 4.05 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -2.65 Total: -9.35 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 0.07 Total: -51.20 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.14 Total: 15.94 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -5.20 Total: -4.43 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.63 -10.09 -39.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728902512.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.737 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds