Wall clock time and date at job start Tue Mar 31 2020 21:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31516 * 119.99546 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00061 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47023 * 90.00536 * 8 6 4 10 10 H 1.48503 * 109.47041 * 210.00292 * 8 6 4 11 11 H 1.48500 * 109.47388 * 329.99951 * 8 6 4 12 12 N 1.46898 * 109.47006 * 239.99936 * 2 1 3 13 13 C 1.46907 * 110.99846 * 306.04564 * 12 2 1 14 14 C 1.46894 * 111.00206 * 70.00284 * 12 2 1 15 15 N 1.46497 * 109.47229 * 170.00001 * 14 12 2 16 16 C 1.36539 * 127.14315 * 269.68001 * 15 14 12 17 17 S 1.76201 * 126.48217 * 0.02562 * 16 15 14 18 18 N 1.31281 * 107.03161 * 179.89607 * 16 15 14 19 19 N 1.28519 * 109.86035 * 0.38293 * 18 16 15 20 20 C 1.30297 * 110.07605 * 359.75784 * 19 18 16 21 21 C 1.50701 * 126.34256 * 179.97438 * 20 19 18 22 22 C 1.50701 * 109.46822 * 270.01955 * 21 20 19 23 23 C 1.33401 * 125.19996 * 89.71871 * 22 21 20 24 24 C 1.38426 * 114.91796 * 179.85957 * 23 22 21 25 25 C 1.33387 * 114.91904 * 0.42901 * 24 23 22 26 26 S 1.75876 * 125.20837 * 270.02312 * 22 21 20 27 27 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 30 30 H 0.97005 * 119.99945 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46867 * 60.00675 * 13 12 2 32 32 H 1.08998 * 109.46750 * 180.02562 * 13 12 2 33 33 H 1.08994 * 109.46944 * 299.99912 * 13 12 2 34 34 H 1.08998 * 109.46955 * 290.00099 * 14 12 2 35 35 H 1.08998 * 109.47049 * 49.99909 * 14 12 2 36 36 H 1.41002 * 100.00313 * 89.99741 * 17 16 15 37 37 H 1.08998 * 109.47253 * 30.02070 * 21 20 19 38 38 H 1.08995 * 109.47295 * 150.02213 * 21 20 19 39 39 H 1.08000 * 122.53590 * 0.02562 * 23 22 21 40 40 H 1.07995 * 122.53777 * 180.19927 * 24 23 22 41 41 H 1.08000 * 125.19929 * 179.79167 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6258 1.2799 2.6541 9 1 -0.8020 0.8746 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8492 2.1774 1.4923 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3077 14 6 1.7530 0.0972 -2.4090 15 7 2.4573 -0.4993 -3.5467 16 6 3.7204 -0.2109 -3.9776 17 16 4.8281 0.9603 -3.2662 18 7 3.9544 -0.9732 -5.0205 19 7 2.9258 -1.7031 -5.2673 20 6 1.9839 -1.4562 -4.4015 21 6 0.6245 -2.1046 -4.3514 22 6 -0.3440 -1.3059 -5.1852 23 6 -0.5794 -1.4967 -6.4843 24 6 -1.5155 -0.6412 -7.0392 25 6 -2.0338 0.2500 -6.1928 26 16 -1.3312 0.0251 -4.5962 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.9033 -0.5279 4.4376 31 1 0.3490 -1.9549 -1.3694 32 1 1.8140 -2.5261 -2.2040 33 1 1.7059 -2.6221 -0.4301 34 1 0.6815 0.1053 -2.6087 35 1 2.1026 1.1188 -2.2603 36 1 5.4916 0.1354 -2.3348 37 1 0.6912 -3.1193 -4.7440 38 1 0.2750 -2.1367 -3.3195 39 1 -0.0794 -2.2624 -7.0589 40 1 -1.8018 -0.6892 -8.0794 41 1 -2.7721 0.9955 -6.4487 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728902512.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:45 Heat of formation + Delta-G solvation = 125.820852 kcal Electronic energy + Delta-G solvation = -25302.261086 eV Core-core repulsion = 21858.198612 eV Total energy + Delta-G solvation = -3444.062474 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 338.093 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.16133 -39.55812 -38.86980 -35.93632 -34.51926 -34.27298 -31.47737 -30.88858 -28.85398 -27.59865 -27.25982 -25.79748 -24.34724 -23.74962 -22.24411 -21.26917 -20.21265 -19.32502 -18.84902 -18.25604 -17.88752 -17.67580 -16.75418 -16.40414 -16.25743 -16.16395 -15.74270 -15.48444 -14.99147 -14.63996 -14.39680 -14.13656 -14.05168 -13.64857 -13.55964 -13.47801 -13.24042 -13.11478 -12.90273 -12.79451 -12.61314 -12.40775 -12.33681 -11.94948 -11.76495 -11.71490 -11.64473 -11.41932 -11.16153 -10.76848 -10.38483 -9.69736 -9.47351 -9.39755 -9.29025 -8.28593 -6.33303 -0.09791 -0.04559 0.32869 0.62496 1.01551 1.19898 1.32301 1.38484 1.42218 1.47771 1.74854 1.82704 2.31781 2.91713 3.07079 3.18344 3.39701 3.63387 3.71729 3.98743 4.14305 4.18577 4.23496 4.34554 4.41788 4.47952 4.50344 4.50582 4.62180 4.67460 4.73265 4.74764 4.88213 5.07545 5.17783 5.29303 5.33197 5.45736 5.53873 5.54676 5.84070 6.05396 6.48407 6.72942 7.31324 7.36727 8.87931 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.011045 B = 0.004510 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.364725 B = 6207.472148 C = 7741.688749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.194 3.806 3 H 0.050 0.950 4 C -0.502 4.502 5 H 0.036 0.964 6 C 0.017 3.983 7 N -0.948 5.948 8 Si 0.944 3.056 9 H -0.267 1.267 10 H -0.304 1.304 11 H -0.238 1.238 12 N -0.547 5.547 13 C 0.028 3.972 14 C 0.266 3.734 15 N -0.443 5.443 16 C 0.155 3.845 17 S 0.000 6.000 18 N -0.274 5.274 19 N -0.310 5.310 20 C 0.212 3.788 21 C 0.030 3.970 22 C -0.198 4.198 23 C -0.117 4.117 24 C -0.143 4.143 25 C -0.202 4.202 26 S 0.076 5.924 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.265 0.735 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.137 0.863 38 H 0.106 0.894 39 H 0.153 0.847 40 H 0.165 0.835 41 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.406 3.693 -19.043 21.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.087 3.913 3 H 0.067 0.933 4 C -0.541 4.541 5 H 0.054 0.946 6 C -0.181 4.181 7 N -0.588 5.588 8 Si 0.771 3.229 9 H -0.193 1.193 10 H -0.232 1.232 11 H -0.162 1.162 12 N -0.272 5.272 13 C -0.120 4.120 14 C 0.054 3.946 15 N -0.135 5.135 16 C -0.221 4.221 17 S 0.150 5.850 18 N -0.118 5.118 19 N -0.152 5.152 20 C -0.058 4.058 21 C -0.011 4.011 22 C -0.316 4.316 23 C -0.148 4.148 24 C -0.173 4.173 25 C -0.338 4.338 26 S 0.339 5.661 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.080 0.920 37 H 0.155 0.845 38 H 0.124 0.876 39 H 0.170 0.830 40 H 0.182 0.818 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -7.893 4.531 -18.340 20.474 hybrid contribution -1.514 -1.007 0.708 1.951 sum -9.406 3.525 -17.632 20.292 Atomic orbital electron populations 1.22773 0.98968 1.02112 1.00753 1.19558 0.90524 0.94770 0.86497 0.93268 1.20996 1.30808 1.12597 0.89681 0.94589 1.25719 0.97321 0.99809 0.95248 1.70032 1.47586 1.42536 0.98663 0.85940 0.79060 0.80175 0.77727 1.19283 1.23223 1.16174 1.61914 1.60403 1.03491 1.01386 1.22471 0.97662 0.90309 1.01538 1.22566 0.95301 0.96549 0.80174 1.47230 1.12669 1.30004 1.23596 1.26171 0.89770 1.06239 0.99943 1.86622 1.41751 1.09154 1.47471 1.74686 1.19324 1.05106 1.12706 1.73988 0.97880 1.20711 1.22664 1.25258 0.99062 0.91790 0.89738 1.18859 0.82029 0.98588 1.01648 1.24100 1.05131 1.03652 0.98692 1.20474 0.99123 1.01747 0.93467 1.20463 0.98313 0.96139 1.02361 1.25993 1.06932 1.05802 0.95026 1.84450 1.37746 1.30648 1.13218 0.91547 0.91959 0.93902 0.92561 0.93243 0.92298 0.92283 0.89740 0.85784 0.91978 0.84504 0.87626 0.82970 0.81802 0.79508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.43 7.92 71.98 0.57 -5.86 16 2 C 0.19 7.69 1.90 44.17 0.08 7.77 16 3 H 0.05 1.96 6.99 -2.39 -0.02 1.94 16 4 C -0.50 -25.91 8.55 25.60 0.22 -25.69 16 5 H 0.04 2.14 7.35 -2.91 -0.02 2.12 16 6 C 0.02 0.90 5.45 84.65 0.46 1.36 16 7 N -0.95 -56.28 13.96 21.45 0.30 -55.98 16 8 Si 0.94 40.64 24.37 68.60 1.67 42.31 16 9 H -0.27 -10.91 6.87 99.48 0.68 -10.22 16 10 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.24 -9.08 6.53 99.48 0.65 -8.43 16 12 N -0.55 -18.98 4.84 -913.85 -4.42 -23.41 16 13 C 0.03 0.91 7.31 127.69 0.93 1.84 16 14 C 0.27 7.49 5.09 170.81 0.87 8.36 16 15 N -0.44 -13.01 2.75 -523.48 -1.44 -14.44 16 16 C 0.16 4.92 8.37 179.55 1.50 6.43 16 17 S 0.00 0.01 25.77 -56.49 -1.46 -1.44 16 18 N -0.27 -9.59 12.23 -56.85 -0.70 -10.28 16 19 N -0.31 -10.23 12.17 -49.52 -0.60 -10.84 16 20 C 0.21 5.95 6.07 137.63 0.83 6.78 16 21 C 0.03 0.64 5.35 29.10 0.16 0.79 16 22 C -0.20 -3.97 5.75 24.59 0.14 -3.83 16 23 C -0.12 -2.12 10.05 21.22 0.21 -1.91 16 24 C -0.14 -2.19 10.18 21.22 0.22 -1.97 16 25 C -0.20 -3.08 11.23 66.72 0.75 -2.34 16 26 S 0.08 1.43 22.57 -56.49 -1.27 0.16 16 27 H 0.07 1.79 6.91 -2.39 -0.02 1.77 16 28 H 0.06 2.12 6.33 -2.39 -0.02 2.10 16 29 H 0.04 1.57 3.27 -2.39 -0.01 1.56 16 30 H 0.27 14.87 8.31 -92.70 -0.77 14.10 16 31 H 0.05 1.39 5.42 -2.39 -0.01 1.38 16 32 H 0.06 1.76 5.39 -2.39 -0.01 1.74 16 33 H 0.06 2.30 6.86 -2.39 -0.02 2.28 16 34 H 0.09 2.09 6.02 -2.39 -0.01 2.07 16 35 H 0.12 3.33 7.64 -2.39 -0.02 3.31 16 36 H 0.12 3.17 9.55 73.80 0.70 3.87 16 37 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.11 2.17 4.94 -2.39 -0.01 2.16 16 39 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 40 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.19 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -65.67 349.65 0.75 -64.92 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 1.72 Total: 17.27 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 6.95 Total: -8.26 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -6.86 Total: -114.95 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 1.67 Total: 42.31 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.73 Total: -1.29 kcal Total: -65.67 0.75 -64.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728902512.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.738 kcal (2) G-P(sol) polarization free energy of solvation -65.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds