Wall clock time and date at job start Tue Mar 31 2020 21:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 119.99665 * 2 1 4 4 H 1.48498 * 109.47435 * 269.99909 * 3 2 1 5 5 H 1.48501 * 109.47111 * 30.00180 * 3 2 1 6 6 H 1.48510 * 109.47101 * 149.99977 * 3 2 1 7 7 C 1.38944 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00209 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00335 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99677 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00178 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.46789 * 179.97438 * 12 10 9 14 14 C 1.34884 * 116.99711 * 180.02562 * 13 12 10 15 15 O 1.21595 * 119.99964 * 0.02562 * 14 13 12 16 16 C 1.46716 * 119.99893 * 180.02562 * 14 13 12 17 17 C 1.36396 * 125.56007 * 179.97438 * 16 14 13 18 18 C 1.40662 * 107.63110 * 180.02562 * 17 16 14 19 19 C 1.40368 * 107.33452 * 0.02562 * 18 17 16 20 20 C 1.40177 * 119.95829 * 180.02562 * 19 18 17 21 21 C 1.35445 * 121.68328 * 359.97230 * 20 19 18 22 22 C 1.40995 * 121.16369 * 0.03298 * 21 20 19 23 23 C 1.40355 * 121.17477 * 179.97438 * 22 21 20 24 24 C 1.36299 * 119.70232 * 180.02562 * 23 22 21 25 25 C 1.39113 * 120.92789 * 0.02562 * 24 23 22 26 26 C 1.36474 * 120.82344 * 359.95135 * 25 24 23 27 27 C 1.39735 * 119.69040 * 0.04251 * 26 25 24 28 28 N 1.37250 * 107.34367 * 359.97438 * 19 18 17 29 29 H 0.97000 * 125.58603 * 180.02562 * 28 19 18 30 30 H 0.96993 * 120.00477 * 0.02562 * 1 2 3 31 31 H 0.96995 * 119.99737 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.46590 * 60.00449 * 12 10 9 33 33 H 1.09001 * 109.47208 * 300.00003 * 12 10 9 34 34 H 1.07993 * 126.18960 * 0.05817 * 17 16 14 35 35 H 1.08003 * 119.15977 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.41632 * 179.74453 * 21 20 19 37 37 H 1.08009 * 120.15114 * 359.97438 * 23 22 21 38 38 H 1.08006 * 119.53596 * 180.02562 * 24 23 22 39 39 H 1.08001 * 119.58251 * 180.02562 * 25 24 23 40 40 H 1.08000 * 120.15677 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4454 2.6527 0.7001 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2440 -4.8629 0.0000 13 8 2.1876 -5.9665 -0.0007 14 6 1.6722 -7.2129 -0.0008 15 8 0.4667 -7.3723 -0.0008 16 6 2.5660 -8.3764 -0.0010 17 6 2.1693 -9.6814 -0.0006 18 6 3.3281 -10.4789 -0.0003 19 6 4.4322 -9.6122 0.0001 20 6 5.7327 -10.1354 -0.0001 21 6 5.9625 -11.4702 -0.0001 22 6 4.8974 -12.3939 -0.0007 23 6 5.1353 -13.7772 -0.0012 24 6 4.0830 -14.6434 -0.0023 25 6 2.7725 -14.1765 -0.0033 26 6 2.5072 -12.8378 -0.0023 27 6 3.5633 -11.9229 -0.0011 28 7 3.9452 -8.3290 -0.0006 29 1 4.4824 -7.5214 -0.0008 30 1 -0.4850 0.8399 -0.0004 31 1 0.3535 -2.3907 0.0002 32 1 0.6171 -4.9208 -0.8897 33 1 0.6176 -4.9205 0.8903 34 1 1.1500 -10.0380 -0.0011 35 1 6.5729 -9.4568 -0.0002 36 1 6.9797 -11.8333 -0.0045 37 1 6.1477 -14.1535 -0.0017 38 1 4.2691 -15.7073 -0.0023 39 1 1.9550 -14.8823 -0.0037 40 1 1.4857 -12.4872 -0.0036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731232366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:19 Heat of formation + Delta-G solvation = -46.708823 kcal Electronic energy + Delta-G solvation = -26545.546637 eV Core-core repulsion = 22483.513141 eV Total energy + Delta-G solvation = -4062.033496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.87056 -40.19616 -39.22720 -38.14919 -36.21375 -35.51771 -34.06600 -32.78031 -31.45090 -31.16963 -29.52724 -29.23249 -28.08988 -25.05393 -24.08665 -23.35086 -22.72412 -21.22235 -20.32408 -19.66722 -18.84771 -18.41985 -18.11779 -16.99811 -16.48703 -16.44158 -16.20870 -15.71833 -15.30765 -14.93483 -14.78099 -14.45562 -14.03873 -13.99642 -13.99288 -13.61539 -13.52411 -13.18196 -13.17373 -13.00652 -12.38366 -12.36943 -12.13986 -11.66976 -11.38752 -11.17947 -11.09779 -11.07006 -10.76926 -10.54071 -10.48225 -10.34593 -10.18708 -9.66165 -9.31894 -8.60498 -8.28279 -8.14150 -7.85830 -6.55000 -3.97428 0.15380 0.83238 1.22910 2.00921 2.43611 2.77048 2.78800 3.00248 3.09473 3.20270 3.25997 3.67030 3.90156 4.06035 4.31169 4.43969 4.54555 4.64363 4.72126 4.77429 4.86372 4.97218 5.04231 5.08352 5.09831 5.27290 5.32920 5.46712 5.54949 5.61991 5.64399 5.78229 5.92549 5.95604 5.98302 6.21320 6.23814 6.28725 6.40922 6.41922 6.63150 6.77169 7.12485 7.42785 7.68346 7.88728 8.42038 9.01414 9.33088 9.82358 10.62007 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.032624 B = 0.001860 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.052826 B =15051.965117 C =15894.873729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.437 3.563 11 O -0.579 6.579 12 C 0.063 3.937 13 O -0.328 6.328 14 C 0.528 3.472 15 O -0.495 6.495 16 C 0.022 3.978 17 C -0.089 4.089 18 C -0.122 4.122 19 C 0.105 3.895 20 C -0.104 4.104 21 C -0.081 4.081 22 C -0.070 4.070 23 C -0.097 4.097 24 C -0.130 4.130 25 C -0.110 4.110 26 C -0.110 4.110 27 C 0.008 3.992 28 N -0.536 5.536 29 H 0.432 0.568 30 H 0.275 0.725 31 H 0.395 0.605 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.159 0.841 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.757 -26.608 0.002 27.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.187 5.187 10 C 0.222 3.778 11 O -0.464 6.464 12 C -0.014 4.014 13 O -0.243 6.243 14 C 0.372 3.628 15 O -0.383 6.383 16 C -0.088 4.088 17 C -0.115 4.115 18 C -0.127 4.127 19 C -0.010 4.010 20 C -0.124 4.124 21 C -0.101 4.101 22 C -0.070 4.070 23 C -0.115 4.115 24 C -0.148 4.148 25 C -0.128 4.128 26 C -0.128 4.128 27 C 0.007 3.993 28 N -0.136 5.136 29 H 0.272 0.728 30 H 0.085 0.915 31 H 0.229 0.771 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.176 0.824 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.099 -26.214 0.007 27.158 hybrid contribution -0.187 1.382 -0.011 1.394 sum 6.913 -24.832 -0.004 25.777 Atomic orbital electron populations 1.69607 1.06006 1.28591 1.49337 1.25324 0.95701 0.99914 0.96761 0.85788 0.79217 0.80356 0.78525 1.20225 1.20752 1.19288 1.19722 0.93480 0.81715 1.48396 0.87603 1.41696 1.09419 1.04062 1.63500 1.19274 0.88309 0.84033 0.86209 1.90550 1.13423 1.86797 1.55595 1.22808 0.90688 0.84070 1.03857 1.86597 1.40435 1.13947 1.83320 1.19905 0.86554 0.82649 0.73683 1.90904 1.14674 1.86541 1.46226 1.19012 0.81810 0.92701 1.15284 1.20648 0.98898 0.89030 1.02894 1.18740 0.92200 0.91765 1.10002 1.18314 0.94806 0.83502 1.04387 1.19749 0.93247 0.95797 1.03563 1.20646 0.98483 0.91736 0.99236 1.17907 0.92316 0.93700 1.03099 1.20977 0.99337 0.91756 0.99399 1.20802 0.92730 0.99781 1.01472 1.20896 0.96875 0.95544 0.99526 1.20854 0.98698 0.92859 1.00405 1.18243 0.92676 0.90214 0.98133 1.42060 1.05735 1.07527 1.58240 0.72765 0.91544 0.77088 0.89204 0.89193 0.82379 0.85540 0.84920 0.85593 0.86105 0.85960 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.72 13.05 55.50 0.72 -22.99 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.46 29.55 -169.99 -5.02 15.44 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 8 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.55 -13.67 5.29 -10.96 -0.06 -13.73 16 10 C 0.44 10.31 7.86 -10.99 -0.09 10.23 16 11 O -0.58 -15.68 16.08 -14.11 -0.23 -15.91 16 12 C 0.06 1.17 5.96 36.01 0.21 1.39 16 13 O -0.33 -5.97 9.77 -47.68 -0.47 -6.44 16 14 C 0.53 8.60 7.94 34.15 0.27 8.87 16 15 O -0.50 -8.69 16.64 -19.34 -0.32 -9.02 16 16 C 0.02 0.31 7.01 -82.33 -0.58 -0.27 16 17 C -0.09 -1.12 10.43 -39.33 -0.41 -1.53 16 18 C -0.12 -1.47 6.20 -104.94 -0.65 -2.12 16 19 C 0.10 1.21 7.25 -83.91 -0.61 0.61 16 20 C -0.10 -0.96 9.91 -39.85 -0.40 -1.36 16 21 C -0.08 -0.68 9.67 -39.53 -0.38 -1.06 16 22 C -0.07 -0.67 5.74 -106.82 -0.61 -1.28 16 23 C -0.10 -0.74 9.77 -39.48 -0.39 -1.12 16 24 C -0.13 -0.93 9.95 -39.96 -0.40 -1.33 16 25 C -0.11 -0.85 9.96 -39.89 -0.40 -1.25 16 26 C -0.11 -1.02 9.74 -39.66 -0.39 -1.41 16 27 C 0.01 0.09 5.89 -104.86 -0.62 -0.53 16 28 N -0.54 -6.59 6.17 -7.31 -0.05 -6.64 16 29 H 0.43 4.85 8.96 -40.82 -0.37 4.49 16 30 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.40 9.31 7.90 -40.82 -0.32 8.99 16 32 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 34 H 0.16 1.73 8.06 -52.49 -0.42 1.30 16 35 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 37 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 38 H 0.12 0.59 8.06 -52.48 -0.42 0.16 16 39 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.13 1.01 8.04 -52.49 -0.42 0.59 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -32.79 361.30 -9.64 -42.43 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -4.00 Total: 11.41 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -5.66 Total: 0.00 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.62 Total: -43.36 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -1.01 Total: -31.36 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.79 -9.64 -42.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731232366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.278 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds