Wall clock time and date at job start Tue Mar 31 2020 21:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 119.99665 * 2 1 4 4 H 1.48498 * 109.47435 * 269.99909 * 3 2 1 5 5 H 1.48501 * 109.47111 * 30.00180 * 3 2 1 6 6 H 1.48510 * 109.47101 * 149.99977 * 3 2 1 7 7 C 1.38944 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00209 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00335 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99677 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00178 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.46789 * 179.97438 * 12 10 9 14 14 C 1.34884 * 116.99711 * 180.02562 * 13 12 10 15 15 O 1.21595 * 119.99964 * 0.02562 * 14 13 12 16 16 C 1.46716 * 119.99893 * 180.02562 * 14 13 12 17 17 C 1.36396 * 125.56007 * 179.97438 * 16 14 13 18 18 C 1.40662 * 107.63110 * 180.02562 * 17 16 14 19 19 C 1.40368 * 107.33452 * 0.02562 * 18 17 16 20 20 C 1.40177 * 119.95829 * 180.02562 * 19 18 17 21 21 C 1.35445 * 121.68328 * 359.97230 * 20 19 18 22 22 C 1.40995 * 121.16369 * 0.03298 * 21 20 19 23 23 C 1.40355 * 121.17477 * 179.97438 * 22 21 20 24 24 C 1.36299 * 119.70232 * 180.02562 * 23 22 21 25 25 C 1.39113 * 120.92789 * 0.02562 * 24 23 22 26 26 C 1.36474 * 120.82344 * 359.95135 * 25 24 23 27 27 C 1.39735 * 119.69040 * 0.04251 * 26 25 24 28 28 N 1.37250 * 107.34367 * 359.97438 * 19 18 17 29 29 H 0.97000 * 125.58603 * 180.02562 * 28 19 18 30 30 H 0.96993 * 120.00477 * 0.02562 * 1 2 3 31 31 H 0.96995 * 119.99737 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.46590 * 60.00449 * 12 10 9 33 33 H 1.09001 * 109.47208 * 300.00003 * 12 10 9 34 34 H 1.07993 * 126.18960 * 0.05817 * 17 16 14 35 35 H 1.08003 * 119.15977 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.41632 * 179.74453 * 21 20 19 37 37 H 1.08009 * 120.15114 * 359.97438 * 23 22 21 38 38 H 1.08006 * 119.53596 * 180.02562 * 24 23 22 39 39 H 1.08001 * 119.58251 * 180.02562 * 25 24 23 40 40 H 1.08000 * 120.15677 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4454 2.6527 0.7001 6 1 3.5457 1.4403 0.7001 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2440 -4.8629 0.0000 13 8 2.1876 -5.9665 -0.0007 14 6 1.6722 -7.2129 -0.0008 15 8 0.4667 -7.3723 -0.0008 16 6 2.5660 -8.3764 -0.0010 17 6 2.1693 -9.6814 -0.0006 18 6 3.3281 -10.4789 -0.0003 19 6 4.4322 -9.6122 0.0001 20 6 5.7327 -10.1354 -0.0001 21 6 5.9625 -11.4702 -0.0001 22 6 4.8974 -12.3939 -0.0007 23 6 5.1353 -13.7772 -0.0012 24 6 4.0830 -14.6434 -0.0023 25 6 2.7725 -14.1765 -0.0033 26 6 2.5072 -12.8378 -0.0023 27 6 3.5633 -11.9229 -0.0011 28 7 3.9452 -8.3290 -0.0006 29 1 4.4824 -7.5214 -0.0008 30 1 -0.4850 0.8399 -0.0004 31 1 0.3535 -2.3907 0.0002 32 1 0.6171 -4.9208 -0.8897 33 1 0.6176 -4.9205 0.8903 34 1 1.1500 -10.0380 -0.0011 35 1 6.5729 -9.4568 -0.0002 36 1 6.9797 -11.8333 -0.0045 37 1 6.1477 -14.1535 -0.0017 38 1 4.2691 -15.7073 -0.0023 39 1 1.9550 -14.8823 -0.0037 40 1 1.4857 -12.4872 -0.0036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731232366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:19 Heat of formation + Delta-G solvation = -65.222297 kcal Electronic energy + Delta-G solvation = -26546.349441 eV Core-core repulsion = 22483.513141 eV Total energy + Delta-G solvation = -4062.836301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.77766 -41.45795 -40.16992 -39.82076 -37.62670 -36.21156 -36.07343 -33.54691 -33.45143 -31.96199 -30.61528 -30.13435 -29.29259 -26.77266 -25.28683 -24.02822 -23.49255 -22.17826 -21.49700 -21.28858 -20.12283 -19.83014 -19.32132 -18.06744 -17.87131 -17.84725 -17.23206 -16.84773 -16.54364 -16.08812 -16.02075 -15.82108 -15.42804 -15.38630 -14.83745 -14.76966 -14.22608 -14.17123 -14.12204 -13.90506 -13.78750 -13.72841 -13.58347 -13.01260 -12.96554 -12.50771 -12.14766 -12.08771 -11.99205 -11.97100 -11.79623 -11.70808 -11.61075 -10.96526 -10.57249 -10.15368 -10.10100 -9.04191 -8.63213 -8.55195 -6.06197 -0.64881 0.12639 0.33956 1.13750 1.19213 1.33610 1.42066 1.54884 1.81180 1.82060 1.91008 2.10097 2.27065 2.96447 3.10247 3.21579 3.51978 3.61975 3.78886 3.89879 3.97235 4.04662 4.10020 4.15938 4.16972 4.22444 4.36483 4.48844 4.56317 4.64605 4.78647 5.01806 5.02784 5.13347 5.22981 5.33308 5.34106 5.41945 5.48758 5.67651 5.69585 5.85163 5.91679 6.13227 6.24075 6.37713 6.47962 6.99244 7.35594 7.88485 8.61647 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.032624 B = 0.001860 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.052826 B =15051.965117 C =15894.873729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.339 4.339 8 H 0.085 0.915 9 N -0.555 5.555 10 C 0.436 3.564 11 O -0.618 6.618 12 C 0.073 3.927 13 O -0.342 6.342 14 C 0.533 3.467 15 O -0.514 6.514 16 C -0.011 4.011 17 C -0.079 4.079 18 C -0.146 4.146 19 C 0.108 3.892 20 C -0.128 4.128 21 C -0.061 4.061 22 C -0.091 4.091 23 C -0.094 4.094 24 C -0.133 4.133 25 C -0.107 4.107 26 C -0.132 4.132 27 C -0.013 4.013 28 N -0.539 5.539 29 H 0.433 0.567 30 H 0.281 0.719 31 H 0.401 0.599 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.167 0.833 35 H 0.148 0.852 36 H 0.169 0.831 37 H 0.156 0.844 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.872 -28.791 -0.014 29.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.209 4.209 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.468 4.468 8 H 0.103 0.897 9 N -0.192 5.192 10 C 0.223 3.777 11 O -0.505 6.505 12 C -0.004 4.004 13 O -0.258 6.258 14 C 0.379 3.621 15 O -0.404 6.404 16 C -0.120 4.120 17 C -0.105 4.105 18 C -0.151 4.151 19 C -0.008 4.008 20 C -0.147 4.147 21 C -0.081 4.081 22 C -0.092 4.092 23 C -0.112 4.112 24 C -0.151 4.151 25 C -0.125 4.125 26 C -0.150 4.150 27 C -0.014 4.014 28 N -0.138 5.138 29 H 0.274 0.726 30 H 0.091 0.909 31 H 0.235 0.765 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.185 0.815 35 H 0.165 0.835 36 H 0.186 0.814 37 H 0.174 0.826 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.179 -28.411 -0.010 29.564 hybrid contribution -0.473 1.771 -0.006 1.833 sum 7.707 -26.639 -0.016 27.732 Atomic orbital electron populations 1.69666 1.06948 1.29807 1.48900 1.26137 0.96597 1.02618 0.95564 0.84845 0.77879 0.76311 0.78801 1.19441 1.19388 1.19559 1.19723 0.92963 0.83322 1.50827 0.89709 1.41725 1.09606 1.04138 1.63770 1.20027 0.88065 0.85296 0.84341 1.90515 1.15377 1.87685 1.56972 1.22601 0.90014 0.81986 1.05808 1.86589 1.40717 1.14603 1.83878 1.20161 0.86759 0.82244 0.72905 1.90876 1.15377 1.86560 1.47537 1.18797 0.82408 0.92056 1.18730 1.20844 0.99695 0.88676 1.01305 1.18965 0.92044 0.92817 1.11244 1.18755 0.95932 0.82971 1.03102 1.20040 0.92776 0.96802 1.05098 1.21100 0.99884 0.91079 0.96019 1.18257 0.92054 0.95117 1.03723 1.21355 1.01067 0.90795 0.97984 1.21210 0.92279 1.01328 1.00246 1.21250 0.98195 0.95206 0.97808 1.21028 0.98717 0.93636 1.01587 1.18479 0.94040 0.89722 0.99112 1.42033 1.05187 1.08018 1.58612 0.72633 0.90901 0.76494 0.87171 0.87158 0.81546 0.83476 0.81406 0.82645 0.83290 0.83759 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.22 13.05 21.66 0.28 -47.94 16 2 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 3 Si 1.00 41.77 29.55 68.60 2.03 43.80 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.34 -18.93 9.68 84.04 0.81 -18.12 16 8 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -28.30 5.29 -306.99 -1.62 -29.93 16 10 C 0.44 21.16 7.86 87.66 0.69 21.84 16 11 O -0.62 -34.71 16.08 15.73 0.25 -34.46 16 12 C 0.07 2.75 5.96 71.24 0.42 3.17 16 13 O -0.34 -12.82 9.77 -51.58 -0.50 -13.32 16 14 C 0.53 17.91 7.94 70.04 0.56 18.47 16 15 O -0.51 -18.39 16.64 19.53 0.32 -18.07 16 16 C -0.01 -0.30 7.01 39.96 0.28 -0.02 16 17 C -0.08 -2.05 10.43 22.43 0.23 -1.82 16 18 C -0.15 -3.57 6.20 -20.07 -0.12 -3.69 16 19 C 0.11 2.51 7.25 39.28 0.28 2.79 16 20 C -0.13 -2.20 9.91 22.10 0.22 -1.98 16 21 C -0.06 -0.86 9.67 22.30 0.22 -0.65 16 22 C -0.09 -1.55 5.74 -21.29 -0.12 -1.67 16 23 C -0.09 -1.12 9.77 22.33 0.22 -0.90 16 24 C -0.13 -1.46 9.95 22.03 0.22 -1.24 16 25 C -0.11 -1.40 9.96 22.07 0.22 -1.18 16 26 C -0.13 -2.33 9.74 22.22 0.22 -2.11 16 27 C -0.01 -0.27 5.89 -20.02 -0.12 -0.39 16 28 N -0.54 -13.77 6.17 -177.04 -1.09 -14.86 16 29 H 0.43 10.30 8.96 -92.71 -0.83 9.47 16 30 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 31 H 0.40 19.23 7.90 -92.71 -0.73 18.49 16 32 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 33 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 34 H 0.17 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 36 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 37 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 38 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 39 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.13 2.07 8.04 -2.91 -0.02 2.04 16 Total: -1.00 -72.10 361.30 3.93 -68.18 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -0.44 Total: 34.05 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 4.69 Total: 12.55 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -2.43 Total: -92.72 kcal Atomic # 8 Polarization: -65.93 SS G_CDS: 0.07 Total: -65.85 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -72.10 3.93 -68.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731232366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.957 kcal (2) G-P(sol) polarization free energy of solvation -72.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds