Wall clock time and date at job start Tue Mar 31 2020 20:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35905 * 116.99842 * 2 1 4 4 C 1.38749 * 120.05241 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.93818 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.05779 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94559 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.46827 * 89.99972 * 7 6 5 9 9 O 1.20823 * 120.00265 * 0.02562 * 8 7 6 10 10 O 1.34228 * 120.00168 * 179.97438 * 8 7 6 11 11 C 1.45199 * 117.00173 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.46921 * 180.02562 * 11 10 8 13 13 O 1.21285 * 120.00033 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99737 * 180.02562 * 12 11 10 15 15 C 1.37093 * 119.99936 * 180.02562 * 14 12 11 16 16 H 1.07999 * 120.00056 * 359.97438 * 15 14 12 17 17 C 1.38947 * 120.00459 * 179.97438 * 15 14 12 18 18 N 1.31414 * 119.99583 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00557 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47142 * 59.99598 * 19 17 15 21 21 H 1.48498 * 109.47089 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46758 * 300.00108 * 19 17 15 23 23 C 1.38240 * 120.11227 * 0.02562 * 6 5 4 24 24 C 1.38167 * 120.05454 * 359.74301 * 23 6 5 25 25 N 1.48003 * 120.02767 * 180.25652 * 24 23 6 26 26 O 1.21804 * 120.00412 * 0.23231 * 25 24 23 27 27 O 1.21806 * 120.00081 * 180.22822 * 25 24 23 28 28 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47054 * 299.99727 * 1 2 3 30 30 H 1.09000 * 109.47187 * 59.99782 * 1 2 3 31 31 H 1.07997 * 120.03263 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.97062 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47253 * 210.00179 * 7 6 5 34 34 H 1.08999 * 109.47057 * 330.00822 * 7 6 5 35 35 H 1.08998 * 109.46994 * 299.99774 * 11 10 8 36 36 H 1.08996 * 109.46917 * 60.00349 * 11 10 8 37 37 H 0.96994 * 119.99879 * 359.97438 * 14 12 11 38 38 H 0.97004 * 120.00090 * 180.02562 * 18 17 15 39 39 H 1.07999 * 119.97669 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0016 7 6 3.9861 5.0186 0.0028 8 6 4.2136 5.4651 1.4240 9 8 3.8572 4.7647 2.3418 10 8 4.8131 6.6405 1.6704 11 6 4.9999 7.0061 3.0632 12 6 5.6831 8.3470 3.1432 13 8 5.9833 8.9363 2.1266 14 7 5.9613 8.8909 4.3446 15 6 6.5822 10.1109 4.4175 16 1 6.8489 10.6361 3.5122 17 6 6.8686 10.6719 5.6560 18 7 6.5437 10.0332 6.7576 19 14 7.7154 12.3341 5.7553 20 1 6.8760 13.3582 5.0830 21 1 7.9070 12.7076 7.1797 22 1 9.0367 12.2573 5.0821 23 6 4.0559 2.5172 0.0011 24 6 3.4311 1.2849 0.0054 25 7 4.2390 0.0448 0.0105 26 8 5.4553 0.1103 0.0153 27 8 3.6876 -1.0413 0.0101 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2128 2.3203 0.0014 32 1 1.3340 4.5114 0.0019 33 1 4.9441 4.9386 -0.5108 34 1 3.3581 5.7467 -0.5106 35 1 4.0300 7.0628 3.5572 36 1 5.6157 6.2542 3.5567 37 1 5.7215 8.4194 5.1576 38 1 6.7433 10.4250 7.6222 39 1 5.1344 2.5752 0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731243443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:24 Heat of formation + Delta-G solvation = -131.211308 kcal Electronic energy + Delta-G solvation = -27766.700233 eV Core-core repulsion = 23257.860420 eV Total energy + Delta-G solvation = -4508.839813 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.34891 -40.92689 -40.34434 -38.62136 -38.06728 -36.53750 -36.20996 -34.05376 -33.28449 -32.31841 -31.43178 -29.34054 -28.33647 -27.35451 -26.59298 -24.65615 -23.05517 -22.59517 -20.96767 -19.65803 -19.45969 -18.80449 -18.26641 -18.11728 -17.78897 -17.62706 -17.08296 -16.46455 -16.39464 -16.35962 -15.55680 -15.22416 -15.10939 -14.67512 -14.57456 -14.13971 -13.99642 -13.46923 -13.03519 -12.94492 -12.83730 -12.49646 -12.18149 -12.09194 -12.03579 -11.74659 -11.65707 -11.61209 -11.16728 -11.16457 -11.14850 -10.60760 -10.52324 -10.52122 -10.33016 -10.09627 -9.64061 -9.07037 -8.58215 -8.13100 -6.54077 -3.96475 -0.36243 0.44341 1.10624 1.23603 2.13963 2.37102 2.47778 2.94817 3.12237 3.20281 3.24882 3.68232 3.78613 3.92374 4.06811 4.07629 4.35495 4.39985 4.50868 4.55164 4.57893 4.76390 4.92622 4.94600 5.01865 5.06002 5.10498 5.16046 5.30944 5.45712 5.61485 5.63725 5.74970 5.99256 6.15670 6.47726 6.50898 7.43533 7.57802 7.69919 7.89816 8.43351 9.02448 9.34230 9.83791 10.62916 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024512 B = 0.001880 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.002201 B =14891.612088 C =15192.039755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.283 6.283 3 C 0.197 3.803 4 C -0.211 4.211 5 C -0.008 4.008 6 C -0.109 4.109 7 C -0.070 4.070 8 C 0.457 3.543 9 O -0.508 6.508 10 O -0.323 6.323 11 C 0.061 3.939 12 C 0.437 3.563 13 O -0.577 6.577 14 N -0.551 5.551 15 C -0.304 4.304 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.897 5.897 19 Si 0.936 3.064 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.002 4.002 24 C -0.080 4.080 25 N 0.037 4.963 26 O -0.177 6.177 27 O -0.141 6.141 28 H 0.112 0.888 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.395 0.605 38 H 0.275 0.725 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.387 -16.837 -13.673 26.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.193 6.193 3 C 0.148 3.852 4 C -0.230 4.230 5 C -0.026 4.026 6 C -0.110 4.110 7 C -0.107 4.107 8 C 0.299 3.701 9 O -0.397 6.397 10 O -0.238 6.238 11 C -0.016 4.016 12 C 0.221 3.779 13 O -0.461 6.461 14 N -0.188 5.188 15 C -0.433 4.433 16 H 0.124 0.876 17 C -0.177 4.177 18 N -0.537 5.537 19 Si 0.762 3.238 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.021 4.021 24 C -0.164 4.164 25 N 0.555 4.445 26 O -0.387 6.387 27 O -0.361 6.361 28 H 0.130 0.870 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.171 0.829 32 H 0.165 0.835 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.229 0.771 38 H 0.085 0.915 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.523 -16.166 -13.841 25.765 hybrid contribution 0.154 0.272 0.944 0.994 sum -14.369 -15.894 -12.897 25.009 Atomic orbital electron populations 1.23330 0.77035 1.05320 1.01931 1.86420 1.22420 1.24391 1.86056 1.18687 0.89427 0.86514 0.90615 1.21276 1.01074 0.90780 1.09916 1.21302 0.93775 0.98168 0.89353 1.19161 0.93381 0.93472 1.05024 1.20213 1.04500 0.93829 0.92151 1.23474 0.74796 0.79595 0.92225 1.90693 1.47840 1.54465 1.46695 1.86538 1.70636 1.36153 1.30435 1.22775 1.02025 0.97799 0.79022 1.19296 0.86403 0.86993 0.85170 1.90560 1.57510 1.63545 1.34479 1.41703 1.52113 1.19215 1.05808 1.19676 1.34531 0.94760 0.94328 0.87627 1.25328 0.97654 1.00139 0.94629 1.69607 1.46786 1.39289 0.98004 0.85843 0.79724 0.81082 0.77157 1.19738 1.20851 1.19710 1.20800 1.02216 0.88460 0.90594 1.20409 0.88151 0.85826 1.22039 1.43285 1.01164 1.02316 0.97695 1.94552 0.95512 1.93911 1.54709 1.94574 1.74342 1.14740 1.52427 0.87013 0.91799 0.91870 0.82886 0.83450 0.85781 0.85700 0.89535 0.89461 0.77150 0.91520 0.82168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.28 -2.58 8.51 -41.57 -0.35 -2.94 16 3 C 0.20 1.86 6.67 -39.22 -0.26 1.60 16 4 C -0.21 -1.41 9.04 -39.43 -0.36 -1.76 16 5 C -0.01 -0.05 9.69 -39.61 -0.38 -0.44 16 6 C -0.11 -0.93 4.38 -104.60 -0.46 -1.38 16 7 C -0.07 -0.57 5.94 -29.03 -0.17 -0.75 16 8 C 0.46 6.13 7.95 36.01 0.29 6.42 16 9 O -0.51 -8.00 15.78 -18.75 -0.30 -8.30 16 10 O -0.32 -5.45 9.75 -45.90 -0.45 -5.90 16 11 C 0.06 1.11 5.94 36.01 0.21 1.32 16 12 C 0.44 10.21 7.86 -10.98 -0.09 10.13 16 13 O -0.58 -15.58 16.08 -14.11 -0.23 -15.80 16 14 N -0.55 -13.65 5.29 -10.97 -0.06 -13.71 16 15 C -0.30 -8.24 9.68 -14.94 -0.14 -8.39 16 16 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 17 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 18 N -0.90 -23.74 13.05 55.50 0.72 -23.02 16 19 Si 0.94 20.41 29.55 -169.99 -5.02 15.38 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 23 C 0.00 -0.02 9.20 -39.61 -0.36 -0.38 16 24 C -0.08 -0.91 6.87 -79.81 -0.55 -1.46 16 25 N 0.04 0.52 4.45 34.03 0.15 0.67 16 26 O -0.18 -2.57 18.45 -29.46 -0.54 -3.12 16 27 O -0.14 -2.04 17.24 -36.49 -0.63 -2.67 16 28 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.19 7.66 -51.93 -0.40 -0.20 16 30 H 0.06 0.15 7.66 -51.93 -0.40 -0.25 16 31 H 0.15 0.54 6.30 -52.49 -0.33 0.21 16 32 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 33 H 0.12 0.81 8.08 -51.93 -0.42 0.39 16 34 H 0.12 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 36 H 0.09 1.46 8.13 -51.93 -0.42 1.03 16 37 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.16 1.46 7.61 -52.49 -0.40 1.06 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -35.82 359.25 -6.56 -42.38 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -3.89 Total: 5.08 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -1.38 Total: 6.54 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.82 Total: -36.06 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -2.50 Total: -38.73 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.82 -6.56 -42.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.836 kcal (2) G-P(sol) polarization free energy of solvation -35.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds