Wall clock time and date at job start Tue Mar 31 2020 20:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35905 * 116.99842 * 2 1 4 4 C 1.38749 * 120.05241 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.93818 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.05779 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94559 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.46827 * 89.99972 * 7 6 5 9 9 O 1.20823 * 120.00265 * 0.02562 * 8 7 6 10 10 O 1.34228 * 120.00168 * 179.97438 * 8 7 6 11 11 C 1.45199 * 117.00173 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.46921 * 180.02562 * 11 10 8 13 13 O 1.21285 * 120.00033 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99737 * 180.02562 * 12 11 10 15 15 C 1.37093 * 119.99936 * 180.02562 * 14 12 11 16 16 H 1.07999 * 120.00056 * 359.97438 * 15 14 12 17 17 C 1.38947 * 120.00459 * 179.97438 * 15 14 12 18 18 N 1.31414 * 119.99583 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00557 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47142 * 59.99598 * 19 17 15 21 21 H 1.48498 * 109.47089 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46758 * 300.00108 * 19 17 15 23 23 C 1.38240 * 120.11227 * 0.02562 * 6 5 4 24 24 C 1.38167 * 120.05454 * 359.74301 * 23 6 5 25 25 N 1.48003 * 120.02767 * 180.25652 * 24 23 6 26 26 O 1.21804 * 120.00412 * 0.23231 * 25 24 23 27 27 O 1.21806 * 120.00081 * 180.22822 * 25 24 23 28 28 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47054 * 299.99727 * 1 2 3 30 30 H 1.09000 * 109.47187 * 59.99782 * 1 2 3 31 31 H 1.07997 * 120.03263 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.97062 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47253 * 210.00179 * 7 6 5 34 34 H 1.08999 * 109.47057 * 330.00822 * 7 6 5 35 35 H 1.08998 * 109.46994 * 299.99774 * 11 10 8 36 36 H 1.08996 * 109.46917 * 60.00349 * 11 10 8 37 37 H 0.96994 * 119.99879 * 359.97438 * 14 12 11 38 38 H 0.97004 * 120.00090 * 180.02562 * 18 17 15 39 39 H 1.07999 * 119.97669 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6758 0.0016 7 6 3.9861 5.0186 0.0028 8 6 4.2136 5.4651 1.4240 9 8 3.8572 4.7647 2.3418 10 8 4.8131 6.6405 1.6704 11 6 4.9999 7.0061 3.0632 12 6 5.6831 8.3470 3.1432 13 8 5.9833 8.9363 2.1266 14 7 5.9613 8.8909 4.3446 15 6 6.5822 10.1109 4.4175 16 1 6.8489 10.6361 3.5122 17 6 6.8686 10.6719 5.6560 18 7 6.5437 10.0332 6.7576 19 14 7.7154 12.3341 5.7553 20 1 6.8760 13.3582 5.0830 21 1 7.9070 12.7076 7.1797 22 1 9.0367 12.2573 5.0821 23 6 4.0559 2.5172 0.0011 24 6 3.4311 1.2849 0.0054 25 7 4.2390 0.0448 0.0105 26 8 5.4553 0.1103 0.0153 27 8 3.6876 -1.0413 0.0101 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2128 2.3203 0.0014 32 1 1.3340 4.5114 0.0019 33 1 4.9441 4.9386 -0.5108 34 1 3.3581 5.7467 -0.5106 35 1 4.0300 7.0628 3.5572 36 1 5.6157 6.2542 3.5567 37 1 5.7215 8.4194 5.1576 38 1 6.7433 10.4250 7.6222 39 1 5.1344 2.5752 0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731243443.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:24 Heat of formation + Delta-G solvation = -153.715734 kcal Electronic energy + Delta-G solvation = -27767.676098 eV Core-core repulsion = 23257.860420 eV Total energy + Delta-G solvation = -4509.815678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.27145 -41.85135 -41.25262 -40.07628 -39.10109 -37.57078 -37.45398 -36.03257 -34.01601 -33.41659 -32.95419 -30.45767 -29.20681 -28.16680 -27.38079 -26.48730 -23.73506 -23.47138 -21.96277 -21.42406 -20.24642 -20.07273 -19.77315 -18.91201 -18.88800 -18.62346 -17.96239 -17.88778 -17.37442 -17.18167 -16.88620 -16.40211 -15.90352 -15.87179 -15.70129 -15.57777 -15.05950 -14.67620 -14.10039 -13.96606 -13.63152 -13.54162 -13.45541 -13.21372 -12.94156 -12.86820 -12.67982 -12.65169 -12.48937 -12.29033 -12.22340 -12.13393 -12.04299 -11.86159 -11.68693 -11.56911 -10.73170 -10.51500 -10.12353 -9.69648 -8.52630 -6.03358 -1.20946 -0.18889 0.25088 0.38906 1.10793 1.37233 1.37761 1.45818 1.56189 1.87280 1.87746 2.18441 2.32296 3.07926 3.13056 3.14435 3.38068 3.50891 3.70098 3.75390 3.81860 4.08490 4.14032 4.17454 4.22182 4.27071 4.34109 4.39628 4.51161 4.61276 4.68399 4.80161 5.02007 5.13657 5.27091 5.35716 5.38738 5.88653 5.93326 6.45140 6.51538 6.63860 7.02532 7.39771 7.92868 8.64012 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.024512 B = 0.001880 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.002201 B =14891.612088 C =15192.039755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.308 6.308 3 C 0.193 3.807 4 C -0.201 4.201 5 C 0.004 3.996 6 C -0.115 4.115 7 C -0.061 4.061 8 C 0.458 3.542 9 O -0.533 6.533 10 O -0.341 6.341 11 C 0.073 3.927 12 C 0.436 3.564 13 O -0.617 6.617 14 N -0.559 5.559 15 C -0.338 4.338 16 H 0.086 0.914 17 C -0.010 4.010 18 N -0.916 5.916 19 Si 0.998 3.002 20 H -0.268 1.268 21 H -0.271 1.271 22 H -0.270 1.270 23 C -0.013 4.013 24 C -0.109 4.109 25 N 0.040 4.960 26 O -0.209 6.209 27 O -0.163 6.163 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.191 0.809 32 H 0.184 0.816 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.399 0.601 38 H 0.281 0.719 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.554 -15.889 -14.130 26.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.219 6.219 3 C 0.143 3.857 4 C -0.220 4.220 5 C -0.014 4.014 6 C -0.116 4.116 7 C -0.097 4.097 8 C 0.302 3.698 9 O -0.423 6.423 10 O -0.256 6.256 11 C -0.005 4.005 12 C 0.223 3.777 13 O -0.504 6.504 14 N -0.197 5.197 15 C -0.467 4.467 16 H 0.104 0.896 17 C -0.211 4.211 18 N -0.556 5.556 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.195 1.195 22 H -0.195 1.195 23 C -0.032 4.032 24 C -0.194 4.194 25 N 0.551 4.449 26 O -0.414 6.414 27 O -0.381 6.381 28 H 0.141 0.859 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.208 0.792 32 H 0.201 0.799 33 H 0.160 0.840 34 H 0.179 0.821 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.234 0.766 38 H 0.090 0.910 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.683 -15.275 -14.290 26.756 hybrid contribution 0.670 -0.066 1.050 1.247 sum -16.014 -15.341 -13.240 25.828 Atomic orbital electron populations 1.23699 0.74522 1.06814 1.03669 1.86401 1.25107 1.24718 1.85676 1.18972 0.88881 0.87736 0.90116 1.21705 1.02662 0.89473 1.08144 1.21796 0.93225 0.99609 0.86777 1.19267 0.94240 0.92730 1.05344 1.20398 1.06331 0.94242 0.88773 1.24449 0.73306 0.77969 0.94034 1.90688 1.48870 1.54710 1.48012 1.86549 1.71682 1.38168 1.29239 1.22471 1.02585 0.94716 0.80682 1.20142 0.85198 0.88368 0.84018 1.90524 1.58939 1.65219 1.35675 1.41760 1.52349 1.18956 1.06596 1.19686 1.36571 0.96205 0.94229 0.89638 1.26139 0.97674 1.03363 0.93904 1.69669 1.46953 1.40554 0.98415 0.84911 0.78535 0.76808 0.77646 1.19333 1.19547 1.19541 1.20913 1.02448 0.88667 0.91166 1.20681 0.88981 0.84747 1.25005 1.43675 1.01178 1.03138 0.96931 1.94520 0.96564 1.94241 1.56054 1.94536 1.74223 1.16079 1.53229 0.85915 0.90362 0.89636 0.79202 0.79903 0.84010 0.82115 0.87462 0.88059 0.76631 0.90996 0.82508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.15 16 2 O -0.31 -5.30 8.51 -71.33 -0.61 -5.91 16 3 C 0.19 3.36 6.67 22.50 0.15 3.51 16 4 C -0.20 -1.94 9.04 22.37 0.20 -1.74 16 5 C 0.00 0.04 9.69 22.25 0.22 0.25 16 6 C -0.11 -1.64 4.38 -19.85 -0.09 -1.72 16 7 C -0.06 -0.81 5.94 29.10 0.17 -0.64 16 8 C 0.46 11.27 7.95 71.24 0.57 11.83 16 9 O -0.53 -15.78 15.78 21.97 0.35 -15.43 16 10 O -0.34 -10.97 9.75 -45.05 -0.44 -11.41 16 11 C 0.07 2.55 5.94 71.24 0.42 2.98 16 12 C 0.44 20.48 7.86 87.66 0.69 21.17 16 13 O -0.62 -33.76 16.08 15.75 0.25 -33.51 16 14 N -0.56 -28.01 5.29 -306.99 -1.62 -29.63 16 15 C -0.34 -18.60 9.68 84.04 0.81 -17.79 16 16 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 17 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 18 N -0.92 -48.11 13.05 21.66 0.28 -47.83 16 19 Si 1.00 41.37 29.55 68.60 2.03 43.40 16 20 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 23 C -0.01 -0.25 9.20 22.25 0.20 -0.05 16 24 C -0.11 -2.49 6.87 36.47 0.25 -2.24 16 25 N 0.04 1.16 4.45 -46.25 -0.21 0.95 16 26 O -0.21 -6.52 18.45 18.88 0.35 -6.18 16 27 O -0.16 -5.00 17.24 25.60 0.44 -4.56 16 28 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.08 0.22 7.66 -2.38 -0.02 0.21 16 30 H 0.09 0.10 7.66 -2.39 -0.02 0.09 16 31 H 0.19 0.34 6.30 -2.91 -0.02 0.32 16 32 H 0.18 0.45 8.06 -2.91 -0.02 0.43 16 33 H 0.14 1.45 8.08 -2.39 -0.02 1.43 16 34 H 0.16 1.04 8.08 -2.39 -0.02 1.02 16 35 H 0.11 3.32 8.13 -2.39 -0.02 3.30 16 36 H 0.10 3.27 8.13 -2.39 -0.02 3.26 16 37 H 0.40 18.91 7.90 -92.71 -0.73 18.17 16 38 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 39 H 0.16 2.95 7.61 -2.91 -0.02 2.93 16 Total: -1.00 -80.81 359.25 6.41 -74.40 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.40 Total: 19.04 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 5.18 Total: 16.67 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -1.55 Total: -76.51 kcal Atomic # 8 Polarization: -77.34 SS G_CDS: 0.34 Total: -77.00 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -80.81 6.41 -74.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243443.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.316 kcal (2) G-P(sol) polarization free energy of solvation -80.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds