Wall clock time and date at job start Tue Mar 31 2020 20:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00071 * 2 1 4 4 H 1.48506 * 109.46852 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47379 * 299.99989 * 3 2 1 6 6 H 1.48497 * 109.47197 * 60.00377 * 3 2 1 7 7 C 1.37877 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99960 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00321 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47302 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46811 * 179.97438 * 10 9 7 12 12 O 1.45204 * 109.46912 * 179.97438 * 11 10 9 13 13 C 1.34231 * 117.00320 * 179.97438 * 12 11 10 14 14 O 1.20823 * 119.99479 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00203 * 180.02562 * 13 12 11 16 16 S 1.81399 * 115.54956 * 340.58261 * 15 13 12 17 17 O 1.42100 * 110.54409 * 145.95703 * 16 15 13 18 18 O 1.42103 * 110.54456 * 282.70482 * 16 15 13 19 19 C 1.76195 * 104.45175 * 34.33327 * 16 15 13 20 20 C 1.38246 * 119.99918 * 269.72973 * 19 16 15 21 21 C 1.38235 * 120.00067 * 179.78825 * 20 19 16 22 22 C 1.38237 * 119.99901 * 0.43530 * 21 20 19 23 23 C 1.38237 * 119.99983 * 359.81195 * 22 21 20 24 24 C 1.38231 * 120.00503 * 89.99741 * 19 16 15 25 25 C 1.52999 * 117.51856 * 126.28393 * 15 13 12 26 26 C 1.53000 * 117.49927 * 194.91629 * 15 13 12 27 27 H 0.97007 * 119.99647 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47258 * 59.99964 * 9 7 2 29 29 H 1.09004 * 109.47053 * 300.00425 * 9 7 2 30 30 H 1.08997 * 109.47235 * 59.99655 * 10 9 7 31 31 H 1.08996 * 109.47057 * 299.99734 * 10 9 7 32 32 H 1.08994 * 109.47048 * 60.00345 * 11 10 9 33 33 H 1.08996 * 109.47253 * 299.99811 * 11 10 9 34 34 H 1.08002 * 119.99846 * 359.97438 * 20 19 16 35 35 H 1.07994 * 119.99914 * 180.27108 * 21 20 19 36 36 H 1.07995 * 120.00344 * 179.84059 * 22 21 20 37 37 H 1.07999 * 120.00365 * 179.97438 * 23 22 21 38 38 H 1.08008 * 119.99599 * 359.97438 * 24 19 16 39 39 H 1.08998 * 117.49904 * 214.96539 * 25 15 13 40 40 H 1.09000 * 117.49617 * 359.97438 * 25 15 13 41 41 H 1.09006 * 117.49961 * 359.97438 * 26 15 13 42 42 H 1.08999 * 117.50126 * 144.97212 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 8 2.4235 -6.0908 -0.0005 13 6 1.9105 -7.3312 0.0005 14 8 0.7127 -7.4894 0.0014 15 6 2.8284 -8.5263 0.0005 16 16 4.5287 -8.2068 -0.5448 17 8 5.4434 -9.0298 0.1660 18 8 4.5867 -8.1006 -1.9607 19 6 4.8753 -6.5769 0.0277 20 6 4.6018 -5.4881 -0.7791 21 6 4.8696 -4.2091 -0.3282 22 6 5.4192 -4.0194 0.9260 23 6 5.6974 -5.1084 1.7307 24 6 5.4257 -6.3871 1.2814 25 6 2.6229 -9.5755 1.0950 26 6 2.2185 -9.8856 -0.3477 27 1 -0.4850 0.8401 -0.0004 28 1 0.6239 -2.5568 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.8718 -3.6044 0.8894 31 1 2.8717 -3.6045 -0.8905 32 1 0.8531 -5.0450 -0.8896 33 1 0.8537 -5.0445 0.8903 34 1 4.1761 -5.6367 -1.7605 35 1 4.6519 -3.3584 -0.9567 36 1 5.6309 -3.0203 1.2773 37 1 6.1272 -4.9602 2.7104 38 1 5.6430 -7.2380 1.9102 39 1 3.5094 -10.0738 1.4873 40 1 1.8238 -9.4011 1.8156 41 1 1.1531 -9.9155 -0.5764 42 1 2.8387 -10.5877 -0.9048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733867354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:40 Heat of formation + Delta-G solvation = -92.368500 kcal Electronic energy + Delta-G solvation = -28222.065582 eV Core-core repulsion = 24261.203334 eV Total energy + Delta-G solvation = -3960.862248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.71975 -39.06341 -37.81672 -37.22840 -36.19750 -36.12032 -34.18617 -32.00284 -31.12221 -30.79664 -27.67457 -25.69277 -23.29676 -23.21368 -22.91958 -22.63828 -21.26618 -20.48251 -19.26487 -18.52217 -17.73047 -16.94005 -16.58637 -16.22705 -16.09580 -15.85994 -15.75410 -14.71050 -14.54777 -14.48078 -14.45607 -14.16675 -13.70533 -13.37332 -12.92987 -12.49067 -12.39657 -12.35316 -12.23439 -12.18741 -12.14455 -12.04693 -11.95798 -11.54600 -11.19711 -11.15605 -11.03727 -10.76889 -10.63094 -10.60765 -10.54547 -10.46891 -9.81696 -9.63553 -9.27457 -9.08512 -8.60148 -8.45969 -6.10911 -4.14243 -0.22027 1.00835 1.47238 1.79347 2.40794 2.58330 3.00805 3.23973 3.32195 3.34297 3.36865 3.68560 3.90449 4.00278 4.30836 4.35843 4.48344 4.89359 4.93129 5.00851 5.01807 5.18985 5.24127 5.25669 5.43262 5.46649 5.48632 5.48887 5.55384 5.84405 5.89149 6.05857 6.18752 6.28168 6.39719 6.43301 6.58177 6.68055 6.87898 6.99825 7.51618 7.61116 7.62391 7.86728 8.26939 8.91894 9.50543 11.00543 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017139 B = 0.003714 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.282464 B = 7536.638427 C = 8551.044110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.116 4.116 11 C 0.064 3.936 12 O -0.341 6.341 13 C 0.512 3.488 14 O -0.493 6.493 15 C -0.657 4.657 16 S 2.540 3.460 17 O -0.929 6.929 18 O -0.925 6.925 19 C -0.640 4.640 20 C 0.014 3.986 21 C -0.124 4.124 22 C -0.058 4.058 23 C -0.145 4.145 24 C -0.028 4.028 25 C -0.094 4.094 26 C -0.097 4.097 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.017 0.983 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.150 -18.431 2.419 20.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.153 4.153 11 C -0.009 4.009 12 O -0.258 6.258 13 C 0.353 3.647 14 O -0.380 6.380 15 C -0.744 4.744 16 S 2.719 3.281 17 O -0.927 6.927 18 O -0.922 6.922 19 C -0.730 4.730 20 C -0.005 4.005 21 C -0.143 4.143 22 C -0.077 4.077 23 C -0.164 4.164 24 C -0.047 4.047 25 C -0.131 4.131 26 C -0.135 4.135 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.141 0.859 41 H 0.148 0.852 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.122 -18.871 1.962 21.052 hybrid contribution -0.486 1.881 0.503 2.007 sum 8.636 -16.990 2.464 19.217 Atomic orbital electron populations 1.69972 1.06113 1.26685 1.50434 1.25018 0.94835 0.99332 0.95182 0.86531 0.80056 0.83722 0.77655 1.19666 1.20972 1.21014 1.21134 0.93007 0.90497 1.51072 0.92397 1.19079 0.93871 0.90842 0.97601 1.22254 1.00135 0.90666 1.02255 1.23658 0.91335 0.83412 1.02461 1.86846 1.41544 1.14397 1.82971 1.20940 0.86826 0.83604 0.73367 1.90648 1.15898 1.86513 1.44915 1.31628 1.23245 0.97063 1.22443 1.04033 0.74267 0.75053 0.74756 1.93559 1.56458 1.67696 1.74941 1.93579 1.85016 1.86307 1.27312 1.29808 1.17010 1.20395 1.05828 1.20719 0.90390 0.91641 0.97785 1.21408 0.98571 0.97268 0.97012 1.21489 0.93380 0.99223 0.93573 1.21153 1.02472 0.92494 1.00237 1.20714 0.93166 0.98099 0.92738 1.23146 1.05437 0.92636 0.91911 1.23094 1.04326 0.87615 0.98470 0.92919 0.96313 0.96443 0.91678 0.91212 0.91159 0.91342 0.84831 0.84287 0.85276 0.85601 0.84964 0.84865 0.85936 0.85187 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -13.64 9.11 -34.44 -0.31 -13.96 16 8 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.12 -2.17 3.61 -26.73 -0.10 -2.26 16 11 C 0.06 1.09 5.47 37.16 0.20 1.29 16 12 O -0.34 -5.15 5.02 -39.26 -0.20 -5.35 16 13 C 0.51 7.35 7.58 36.00 0.27 7.62 16 14 O -0.49 -8.21 16.10 -18.75 -0.30 -8.51 16 15 C -0.66 -7.19 2.75 -91.78 -0.25 -7.44 16 16 S 2.54 30.81 5.37 -107.50 -0.58 30.24 16 17 O -0.93 -11.78 16.42 -57.54 -0.94 -12.72 16 18 O -0.92 -13.58 17.12 -57.54 -0.98 -14.57 16 19 C -0.64 -8.34 4.04 -39.58 -0.16 -8.50 16 20 C 0.01 0.19 5.98 -39.58 -0.24 -0.04 16 21 C -0.12 -1.71 6.36 -39.58 -0.25 -1.96 16 22 C -0.06 -0.75 9.28 -39.58 -0.37 -1.12 16 23 C -0.14 -1.69 10.05 -39.58 -0.40 -2.09 16 24 C -0.03 -0.33 9.47 -39.58 -0.37 -0.71 16 25 C -0.09 -0.72 9.86 -26.73 -0.26 -0.98 16 26 C -0.10 -0.78 9.80 -26.73 -0.26 -1.04 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 1.19 6.57 -51.93 -0.34 0.85 16 31 H 0.07 1.23 5.21 -51.93 -0.27 0.96 16 32 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 33 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 34 H 0.13 1.79 7.56 -52.49 -0.40 1.39 16 35 H 0.14 1.91 7.01 -52.49 -0.37 1.54 16 36 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.13 1.29 7.57 -52.48 -0.40 0.89 16 39 H 0.13 0.75 7.66 -51.93 -0.40 0.36 16 40 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.13 1.06 7.75 -51.93 -0.40 0.66 16 42 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 358.30 15.07 5.40 5.40 Total: -1.00 -33.55 358.30 -10.12 -43.67 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.50 Total: 0.62 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: -2.74 Total: -29.28 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.74 Total: -25.19 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -2.43 Total: -41.14 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 30.81 SS G_CDS: -0.58 Total: 30.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.55 -10.12 -43.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733867354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.697 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds