Wall clock time and date at job start Tue Mar 31 2020 20:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00071 * 2 1 4 4 H 1.48506 * 109.46852 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47379 * 299.99989 * 3 2 1 6 6 H 1.48497 * 109.47197 * 60.00377 * 3 2 1 7 7 C 1.37877 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99960 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00321 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47302 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46811 * 179.97438 * 10 9 7 12 12 O 1.45204 * 109.46912 * 179.97438 * 11 10 9 13 13 C 1.34231 * 117.00320 * 179.97438 * 12 11 10 14 14 O 1.20823 * 119.99479 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00203 * 180.02562 * 13 12 11 16 16 S 1.81399 * 115.54956 * 340.58261 * 15 13 12 17 17 O 1.42100 * 110.54409 * 145.95703 * 16 15 13 18 18 O 1.42103 * 110.54456 * 282.70482 * 16 15 13 19 19 C 1.76195 * 104.45175 * 34.33327 * 16 15 13 20 20 C 1.38246 * 119.99918 * 269.72973 * 19 16 15 21 21 C 1.38235 * 120.00067 * 179.78825 * 20 19 16 22 22 C 1.38237 * 119.99901 * 0.43530 * 21 20 19 23 23 C 1.38237 * 119.99983 * 359.81195 * 22 21 20 24 24 C 1.38231 * 120.00503 * 89.99741 * 19 16 15 25 25 C 1.52999 * 117.51856 * 126.28393 * 15 13 12 26 26 C 1.53000 * 117.49927 * 194.91629 * 15 13 12 27 27 H 0.97007 * 119.99647 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47258 * 59.99964 * 9 7 2 29 29 H 1.09004 * 109.47053 * 300.00425 * 9 7 2 30 30 H 1.08997 * 109.47235 * 59.99655 * 10 9 7 31 31 H 1.08996 * 109.47057 * 299.99734 * 10 9 7 32 32 H 1.08994 * 109.47048 * 60.00345 * 11 10 9 33 33 H 1.08996 * 109.47253 * 299.99811 * 11 10 9 34 34 H 1.08002 * 119.99846 * 359.97438 * 20 19 16 35 35 H 1.07994 * 119.99914 * 180.27108 * 21 20 19 36 36 H 1.07995 * 120.00344 * 179.84059 * 22 21 20 37 37 H 1.07999 * 120.00365 * 179.97438 * 23 22 21 38 38 H 1.08008 * 119.99599 * 359.97438 * 24 19 16 39 39 H 1.08998 * 117.49904 * 214.96539 * 25 15 13 40 40 H 1.09000 * 117.49617 * 359.97438 * 25 15 13 41 41 H 1.09006 * 117.49961 * 359.97438 * 26 15 13 42 42 H 1.08999 * 117.50126 * 144.97212 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 8 2.4235 -6.0908 -0.0005 13 6 1.9105 -7.3312 0.0005 14 8 0.7127 -7.4894 0.0014 15 6 2.8284 -8.5263 0.0005 16 16 4.5287 -8.2068 -0.5448 17 8 5.4434 -9.0298 0.1660 18 8 4.5867 -8.1006 -1.9607 19 6 4.8753 -6.5769 0.0277 20 6 4.6018 -5.4881 -0.7791 21 6 4.8696 -4.2091 -0.3282 22 6 5.4192 -4.0194 0.9260 23 6 5.6974 -5.1084 1.7307 24 6 5.4257 -6.3871 1.2814 25 6 2.6229 -9.5755 1.0950 26 6 2.2185 -9.8856 -0.3477 27 1 -0.4850 0.8401 -0.0004 28 1 0.6239 -2.5568 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.8718 -3.6044 0.8894 31 1 2.8717 -3.6045 -0.8905 32 1 0.8531 -5.0450 -0.8896 33 1 0.8537 -5.0445 0.8903 34 1 4.1761 -5.6367 -1.7605 35 1 4.6519 -3.3584 -0.9567 36 1 5.6309 -3.0203 1.2773 37 1 6.1272 -4.9602 2.7104 38 1 5.6430 -7.2380 1.9102 39 1 3.5094 -10.0738 1.4873 40 1 1.8238 -9.4011 1.8156 41 1 1.1531 -9.9155 -0.5764 42 1 2.8387 -10.5877 -0.9048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733867354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:39 Heat of formation + Delta-G solvation = -112.588275 kcal Electronic energy + Delta-G solvation = -28222.942378 eV Core-core repulsion = 24261.203334 eV Total energy + Delta-G solvation = -3961.739043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.87741 -40.03845 -38.77386 -38.25484 -37.25918 -37.16771 -35.99530 -33.80643 -32.12060 -31.83433 -29.31869 -26.97961 -24.83888 -24.08904 -23.80309 -23.58306 -22.38285 -22.07361 -20.29856 -19.56374 -18.77271 -18.55617 -17.84415 -17.68776 -17.05277 -16.83293 -16.74629 -16.47842 -15.77533 -15.61873 -15.36594 -15.30289 -14.84474 -14.37513 -14.30380 -13.95661 -13.84292 -13.75856 -13.41337 -13.24450 -13.17792 -13.14805 -12.88020 -12.68892 -12.47699 -12.43911 -12.28878 -12.19631 -12.00636 -11.90824 -11.83668 -11.50496 -11.41551 -11.38001 -11.19706 -10.56499 -10.10605 -9.64335 -8.20103 -6.30272 -1.15519 0.02558 0.48841 0.77354 1.29578 1.41375 1.42980 1.54651 1.65916 2.16059 2.41058 2.45677 2.80168 2.98567 3.15189 3.20818 3.43081 3.55995 3.96099 3.99789 4.02529 4.08784 4.22632 4.24596 4.40460 4.46219 4.53765 4.58659 4.68074 4.81486 4.85557 4.88741 4.91066 5.09355 5.11221 5.22332 5.29683 5.43735 5.52208 5.59465 5.66220 5.82482 6.04124 6.20534 6.42072 6.86200 7.39328 8.92512 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017139 B = 0.003714 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.282464 B = 7536.638427 C = 8551.044110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.255 1.255 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.071 0.929 9 C 0.026 3.974 10 C -0.097 4.097 11 C 0.071 3.929 12 O -0.335 6.335 13 C 0.510 3.490 14 O -0.520 6.520 15 C -0.669 4.669 16 S 2.560 3.440 17 O -0.932 6.932 18 O -0.956 6.956 19 C -0.652 4.652 20 C -0.004 4.004 21 C -0.140 4.140 22 C -0.069 4.069 23 C -0.144 4.144 24 C -0.031 4.031 25 C -0.076 4.076 26 C -0.093 4.093 27 H 0.262 0.738 28 H -0.008 1.008 29 H -0.009 1.009 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.139 0.861 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.161 0.839 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.052 -19.818 3.635 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.179 1.179 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.089 0.911 9 C -0.012 4.012 10 C -0.134 4.134 11 C -0.002 4.002 12 O -0.251 6.251 13 C 0.353 3.647 14 O -0.409 6.409 15 C -0.758 4.758 16 S 2.740 3.260 17 O -0.929 6.929 18 O -0.953 6.953 19 C -0.742 4.742 20 C -0.023 4.023 21 C -0.159 4.159 22 C -0.087 4.087 23 C -0.163 4.163 24 C -0.050 4.050 25 C -0.113 4.113 26 C -0.130 4.130 27 H 0.071 0.929 28 H 0.011 0.989 29 H 0.009 0.991 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.157 0.843 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.179 0.821 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 11.071 -20.265 3.171 23.309 hybrid contribution -1.102 2.203 0.153 2.468 sum 9.969 -18.062 3.324 20.897 Atomic orbital electron populations 1.70114 1.07948 1.27627 1.51963 1.25950 0.95624 1.03319 0.94905 0.85434 0.79482 0.78938 0.77422 1.17869 1.20938 1.20821 1.21600 0.93849 0.91325 1.49951 0.91057 1.18965 0.94295 0.92851 0.95043 1.21946 0.98710 0.89600 1.03136 1.23305 0.91180 0.83829 1.01907 1.86865 1.40556 1.14570 1.83132 1.21540 0.87138 0.83851 0.72209 1.90642 1.17151 1.86769 1.46312 1.31509 1.21338 0.96705 1.26243 1.03371 0.74401 0.74379 0.73830 1.93547 1.57018 1.67573 1.74758 1.93542 1.85811 1.86583 1.29351 1.29996 1.17248 1.20581 1.06354 1.20755 0.91354 0.92182 0.97995 1.21436 0.99664 0.97085 0.97710 1.21709 0.93325 1.00304 0.93344 1.21510 1.01593 0.91998 1.01154 1.21097 0.92235 0.99183 0.92473 1.23503 1.06564 0.89636 0.91591 1.23465 1.04770 0.85509 0.99296 0.92926 0.98927 0.99055 0.90959 0.90119 0.91837 0.91907 0.85429 0.85018 0.84322 0.82801 0.82486 0.82125 0.85375 0.85378 0.83120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.70 13.29 21.45 0.28 -55.41 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.96 42.50 29.54 68.60 2.03 44.52 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.53 -28.10 9.11 25.60 0.23 -27.87 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.28 4.97 29.85 0.15 1.43 16 10 C -0.10 -3.68 3.61 30.59 0.11 -3.57 16 11 C 0.07 2.48 5.47 71.98 0.39 2.87 16 12 O -0.34 -10.06 5.02 -51.42 -0.26 -10.32 16 13 C 0.51 14.29 7.58 71.23 0.54 14.83 16 14 O -0.52 -17.20 16.10 21.97 0.35 -16.84 16 15 C -0.67 -13.30 2.75 -11.54 -0.03 -13.34 16 16 S 2.56 57.75 5.37 -56.49 -0.30 57.44 16 17 O -0.93 -21.03 16.42 -127.65 -2.10 -23.13 16 18 O -0.96 -27.45 17.12 -127.65 -2.19 -29.63 16 19 C -0.65 -16.18 4.04 22.27 0.09 -16.09 16 20 C 0.00 -0.10 5.98 22.27 0.13 0.03 16 21 C -0.14 -3.83 6.36 22.27 0.14 -3.69 16 22 C -0.07 -1.67 9.28 22.27 0.21 -1.46 16 23 C -0.14 -3.02 10.05 22.27 0.22 -2.79 16 24 C -0.03 -0.66 9.47 22.27 0.21 -0.45 16 25 C -0.08 -0.91 9.86 30.60 0.30 -0.60 16 26 C -0.09 -1.23 9.80 30.60 0.30 -0.93 16 27 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 28 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 30 H 0.07 2.64 6.57 -2.39 -0.02 2.63 16 31 H 0.08 2.90 5.21 -2.39 -0.01 2.89 16 32 H 0.06 2.29 8.13 -2.39 -0.02 2.27 16 33 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 34 H 0.13 3.54 7.56 -2.91 -0.02 3.52 16 35 H 0.13 3.67 7.01 -2.91 -0.02 3.65 16 36 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.16 2.51 7.57 -2.91 -0.02 2.48 16 39 H 0.16 1.08 7.66 -2.39 -0.02 1.06 16 40 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.13 1.82 7.75 -2.38 -0.02 1.80 16 42 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -73.17 358.30 2.32 -70.85 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 1.03 Total: 13.71 kcal Atomic # 6 Polarization: -54.66 SS G_CDS: 3.46 Total: -51.19 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.28 Total: -55.41 kcal Atomic # 8 Polarization: -75.74 SS G_CDS: -4.19 Total: -79.92 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 57.75 SS G_CDS: -0.30 Total: 57.44 kcal Total: -73.17 2.32 -70.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733867354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.736 kcal (2) G-P(sol) polarization free energy of solvation -73.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds