Wall clock time and date at job start Tue Mar 31 2020 21:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 S 1.65600 * 119.99915 * 240.00242 * 12 2 1 15 15 O 1.42101 * 106.39901 * 203.53726 * 14 12 2 16 16 O 1.42096 * 106.40513 * 336.45952 * 14 12 2 17 17 C 1.76201 * 107.21772 * 90.00280 * 14 12 2 18 18 C 1.38782 * 120.31670 * 269.71692 * 17 14 12 19 19 C 1.38413 * 118.50493 * 179.78189 * 18 17 14 20 20 C 1.39289 * 119.07175 * 0.49176 * 19 18 17 21 21 C 1.48433 * 119.72570 * 179.72118 * 20 19 18 22 22 N 1.34058 * 126.67132 * 0.05569 * 21 20 19 23 23 N 1.28993 * 107.26522 * 179.97438 * 22 21 20 24 24 N 1.28736 * 108.94495 * 359.97438 * 23 22 21 25 25 H 0.96999 * 125.33626 * 179.97438 * 24 23 22 26 26 N 1.28875 * 109.31902 * 359.76371 * 24 23 22 27 27 N 1.32628 * 120.55512 * 359.75153 * 20 19 18 28 28 C 1.31763 * 121.61624 * 359.97438 * 27 20 19 29 29 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 30 30 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 31 31 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 34 34 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 35 35 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 36 36 H 1.08000 * 120.74471 * 0.02562 * 18 17 14 37 37 H 1.07997 * 120.46440 * 180.23987 * 19 18 17 38 38 H 1.08003 * 119.55449 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7117 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 6 1.8960 0.8536 3.4711 18 6 1.4099 2.1380 3.2708 19 6 0.5649 2.6805 4.2233 20 6 0.2414 1.9268 5.3491 21 6 -0.6586 2.4967 6.3828 22 7 -1.2296 3.7095 6.3666 23 7 -1.9336 3.8156 7.4422 24 7 -1.8256 2.7274 8.1214 25 1 -2.2577 2.5517 8.9719 26 7 -1.0570 1.9064 7.4920 27 7 0.7313 0.7042 5.5056 28 6 1.5333 0.1619 4.6118 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.9028 -0.5285 -4.4375 33 1 2.4157 -2.7377 0.9718 34 1 1.6237 -2.2852 2.5003 35 1 0.6904 -2.3002 0.9847 36 1 1.6818 2.7000 2.3895 37 1 0.1652 3.6759 4.0975 38 1 1.9133 -0.8361 4.7731 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735963720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:03 Heat of formation + Delta-G solvation = 111.317732 kcal Electronic energy + Delta-G solvation = -26927.850335 eV Core-core repulsion = 22936.865744 eV Total energy + Delta-G solvation = -3990.984591 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.90856 -40.43333 -36.99641 -36.54194 -35.51410 -34.92191 -34.10799 -32.84393 -32.57327 -31.36173 -30.13104 -25.93040 -25.87018 -25.24817 -25.05426 -23.68669 -22.61123 -20.97756 -19.76271 -18.85833 -17.82345 -17.59551 -17.38742 -17.07260 -16.85045 -16.31115 -15.51320 -14.85314 -14.75626 -14.47588 -14.34000 -13.76894 -13.66463 -13.42103 -13.31827 -12.85744 -12.68817 -12.38258 -12.26178 -12.03557 -11.85610 -11.75281 -11.60544 -11.59670 -11.53210 -11.31585 -11.21004 -11.12697 -10.55830 -10.34056 -10.21513 -9.93035 -9.66745 -9.51393 -9.47148 -8.68843 -8.23613 -6.17235 -4.18627 -0.13473 0.65477 0.72491 0.89434 1.72707 1.78038 2.92210 3.18366 3.19759 3.29044 3.33291 3.49527 3.59072 4.05155 4.27046 4.29916 4.38139 4.61267 4.65689 4.75870 5.02200 5.06674 5.11218 5.35571 5.37416 5.54242 5.62212 5.92010 5.93531 6.10853 6.13892 6.15879 6.23475 6.36923 6.49749 6.71842 7.16582 7.24662 7.32532 7.54364 7.69711 8.40860 8.87164 9.41779 10.95563 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016699 B = 0.003445 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.346268 B = 8125.193248 C = 9034.261206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.238 3.762 3 H 0.060 0.940 4 C -0.523 4.523 5 H 0.084 0.916 6 C 0.076 3.924 7 N -0.892 5.892 8 Si 0.879 3.121 9 H -0.277 1.277 10 H -0.263 1.263 11 H -0.293 1.293 12 N -0.971 5.971 13 C 0.104 3.896 14 S 2.688 3.312 15 O -0.959 6.959 16 O -0.943 6.943 17 C -0.717 4.717 18 C 0.030 3.970 19 C -0.147 4.147 20 C 0.241 3.759 21 C 0.213 3.787 22 N -0.254 5.254 23 N -0.047 5.047 24 N -0.226 5.226 25 H 0.478 0.522 26 N -0.253 5.253 27 N -0.467 5.467 28 C 0.202 3.798 29 H 0.031 0.969 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.266 0.734 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.914 5.453 20.730 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.133 3.867 3 H 0.077 0.923 4 C -0.563 4.563 5 H 0.102 0.898 6 C -0.128 4.128 7 N -0.529 5.529 8 Si 0.709 3.291 9 H -0.204 1.204 10 H -0.188 1.188 11 H -0.220 1.220 12 N -0.811 5.811 13 C -0.041 4.041 14 S 2.773 3.227 15 O -0.949 6.949 16 O -0.933 6.933 17 C -0.802 4.802 18 C 0.003 3.997 19 C -0.170 4.170 20 C 0.102 3.898 21 C -0.068 4.068 22 N -0.128 5.128 23 N -0.042 5.042 24 N -0.073 5.073 25 H 0.333 0.667 26 N -0.105 5.105 27 N -0.178 5.178 28 C 0.043 3.957 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.181 0.819 37 H 0.176 0.824 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -7.654 5.507 21.585 23.554 hybrid contribution -1.220 0.947 -0.268 1.567 sum -8.874 6.454 21.316 23.975 Atomic orbital electron populations 1.22534 0.99082 1.01715 0.99154 1.19184 0.90414 0.93807 0.83262 0.92255 1.21109 1.32756 1.14434 0.87955 0.89761 1.24895 0.95675 0.96520 0.95679 1.69865 1.44976 1.40076 0.98006 0.86989 0.80534 0.83867 0.77690 1.20365 1.18815 1.21976 1.57172 1.70433 1.19865 1.33601 1.21307 1.02442 0.81087 0.99305 1.02359 0.73928 0.73642 0.72732 1.93551 1.67685 1.58821 1.74828 1.93591 1.72808 1.56016 1.70923 1.32793 1.22148 1.07478 1.17774 1.21441 0.88719 0.91948 0.97592 1.22102 0.99129 1.02124 0.93620 1.17971 0.91975 0.90424 0.89440 1.23151 1.00575 0.89566 0.93493 1.76112 1.08192 1.16224 1.12260 1.78959 1.16457 1.08760 0.99979 1.47884 1.31046 1.07833 1.20499 0.66717 1.75166 1.08435 1.19516 1.07416 1.67590 1.09762 1.10157 1.30258 1.22543 0.88145 0.98848 0.86210 0.94985 0.92993 0.91928 0.92345 0.92088 0.92700 0.90583 0.81890 0.82439 0.80169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 8.65 37.16 0.32 -2.86 16 2 C 0.24 5.12 2.21 -69.08 -0.15 4.97 16 3 H 0.06 1.32 5.97 -51.93 -0.31 1.01 16 4 C -0.52 -13.71 8.95 -34.44 -0.31 -14.02 16 5 H 0.08 2.39 7.89 -52.49 -0.41 1.98 16 6 C 0.08 2.06 5.45 -17.82 -0.10 1.97 16 7 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 8 Si 0.88 20.48 24.37 -169.99 -4.14 16.34 16 9 H -0.28 -6.18 6.87 56.52 0.39 -5.79 16 10 H -0.26 -5.75 6.53 56.52 0.37 -5.38 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 N -0.97 -17.83 3.06 -115.84 -0.35 -18.18 16 13 C 0.10 1.64 9.53 59.85 0.57 2.21 16 14 S 2.69 46.21 5.65 -107.50 -0.61 45.60 16 15 O -0.96 -17.22 16.37 -57.17 -0.94 -18.16 16 16 O -0.94 -18.95 15.91 -57.17 -0.91 -19.86 16 17 C -0.72 -10.08 5.99 -39.38 -0.24 -10.32 16 18 C 0.03 0.38 9.64 -39.32 -0.38 0.00 16 19 C -0.15 -1.73 9.74 -39.13 -0.38 -2.11 16 20 C 0.24 3.10 6.75 -82.93 -0.56 2.54 16 21 C 0.21 2.56 8.03 -156.30 -1.26 1.30 16 22 N -0.25 -2.92 12.21 32.15 0.39 -2.53 16 23 N -0.05 -0.44 13.47 60.35 0.81 0.38 16 24 N -0.23 -1.58 7.90 60.35 0.48 -1.10 16 25 H 0.48 0.88 8.96 -340.36 -3.05 -2.17 16 26 N -0.25 -2.66 12.38 32.17 0.40 -2.26 16 27 N -0.47 -6.35 10.29 -9.77 -0.10 -6.45 16 28 C 0.20 2.65 10.68 -17.58 -0.19 2.47 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 31 H 0.06 1.14 6.66 -51.93 -0.35 0.79 16 32 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.67 7.79 -51.93 -0.40 0.27 16 35 H 0.08 1.14 6.43 -51.93 -0.33 0.81 16 36 H 0.16 1.91 7.70 -52.49 -0.40 1.50 16 37 H 0.16 1.49 7.88 -52.49 -0.41 1.08 16 38 H 0.18 1.98 7.62 -52.48 -0.40 1.58 16 LS Contribution 336.48 15.07 5.07 5.07 Total: -1.00 -34.53 336.48 -8.07 -42.60 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -6.27 Total: -2.31 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -2.67 Total: -13.85 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 2.40 Total: -55.43 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -1.85 Total: -38.02 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.14 Total: 16.34 kcal Atomic # 16 Polarization: 46.21 SS G_CDS: -0.61 Total: 45.60 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.53 -8.07 -42.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735963720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.916 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds